Ss1.1-Pig4-TMW8046A05.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGCCCCCGCCGGCTGGGGCGGCTGGCACCGCGCAGTAGGTTCCACTAACGCTAAGTCGG TTGGCAGTAGAGGTTGTGGGGCTGTGGGCAGCAGGACATGGAGCAGCCGTGGCCGCCGCC AGGACCTTGGAGCCTCCCTCGGGCAGGAGGTGAGGCTGAGGAAGAGAGTGACTTGGATGT GTCCCCTGGTTCTCCCCGCTGCCTGCAGCTGCCCGGCGGCGGCTCCCAGATGTATAGCCA TGGAATTGAAATGGCTTGCCAGAAGCAGAAAGAGTTTGTGAAGAGTTCTGTGGCTTGCAA ATGGAATCTCGCTGAAGCTCAGCAGAAACTTGGTAGCTTAGCACTGCATAACTCTGAGTC CTTGGATCAGGAACATGCCAAAGCACAAACAGCAGTATCAGAACTGCGGCAACGGGAAGA AGAATGGCGGCAGAAAGAAGAGGCTCTAGTACAAAGAGAGAGAATGTGTCTCTGGAACAT GGATGCCATTAGCAAGGATGTTTTTAATAAGAGTTTTATTAATCAAGATAAAAGAAAAGA AACAGAAGATGAAGATAAATCAAAATCATTTATGCAGAAATATGAGCAAAAAATCAGACA TTTTGGTATGTTAAGTCGATGGGATGATAGTCAGAGATTTTTGTCTGACAATCCATACCT TGTATGTGAAGAAACTGCTAAGTATCTTATTTTATGGTGTTTTCATCTAGAAGCAGAACA GAAAGGGGCTCTAATGGAACAAATAGCACATCAAGCTGTCGTAATGCAGTTTATTATGGA AATGGCCAAAAACTGTAATGTGGATCCAAGAGGATGTTTTCGTTTATTTTTCCAGAAAGC CAAAGCAGAGGAAGAAGGTTATTTTGAAGCTTTCAAAAATGAACTTGAAGCGTTCAAGTC AAGAGTCAGACTTTATTCTCAGTCACCAAGTTTTCAACCTGTTACAGTTCAGAATCATGT TCCCCATTCTGGTGTTGGATCTATAGGTTTATTAGAATCCTTACCACAGAATCCAGATTA TCTTCAGTATTCTATCAATACAGCTCCCTGCAGTTTAAACTCAGTGGTACATAAGGAAGA TGATGAACCCAAAATGATGGACACTGTATAATTTAGTTAAGACTGCTGAAGCCAAGTGAT ATTTTGTTACAAGAAAGGAAGAACTTGGCTATTTTCTTGACACTTTTATGGGTGCTGCAC TTTATTTTTGTTCGGTTTTTGATGGGAGGGGAAAAAAAGAGTACTGAAAGGTTTTGTAAA AATTTTTTTTTATGTGCTGCTAGGGTTTTTTTGCTTTGTTCTTTTCTGAAGAGAGGAATG GTACTGTATGTTGCAGGAAGTCAAACTGGACTTTTTGGGGGGGGTTTGGCTACTAAATTT GCCTTTAATCTTAGTATTCTCAATTTTGGAATCAAAGTATGAAAATCTGCACAAATGCAA TGTTTACAAGAACTGGTTGATTCTAGGAGGCATATGCTACAGTCTCTTTTTATATGGATA TGTACATGTCCTACTCTACAAAAAAATGATTAAAGATAAAAATGTACTTGTATCCTGCTA ATTTAGCTGTCAAATCTGCTATTTCATCATATTAAAAGCAATAAATCAGTAGCTGATAAT CTACTTTTCTAAATAAGCTGGGTGGTACAAATTAAAACAAAGTCTTTCCCCTTAAAATAA TATTACATTTGTTTTTTCGGCACCATCAGTTAAATC |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGCCCCCGCCGGCTGGGGCGGCTGGCACCGCGCAGTAGGTTCCACTAACGCTAAGTCGG TTGGCAGTAGAGGTTGTGGGGCTGTGGGCAGCAGGACATGGAGCAGCCGTGGCCGCCGCC AGGACCTTGGAGCCTCCCTCGGGCAGGAGGTGAGGCTGAGGAAGAGAGTGACTTGGATGT GTCCCCTGGTTCTCCCCGCTGCCTGCAGCTGCCCGGCGGCGGCTCCCAGATGTATAGCCA TGGAATTGAAATGGCTTGCCAGAAGCAGAAAGAGTTTGTGAAGAGTTCTGTGGCTTGCAA ATGGAATCTCGCTGAAGCTCAGCAGAAACTTGGTAGCTTAGCACTGCATAACTCTGAGTC CTTGGATCAGGAACATGCCAAAGCACAAACAGCAGTATCAGAACTGCGGCAACGGGAAGA AGAATGGCGGCAGAAAGAAGAGGCTCTAGTACAAAGAGAGAGAATGTGTCTCTGGAACAT GGATGCCATTAGCAAGGATGTTTTTAATAAGAGTTTTATTAATCAAGATAAAAGAAAAGA AACAGAAGATGAAGATAAATCAAAATCATTTATGCAGAAATATGAGCAAAAAATCAGACA TTTTGGTATGTTAAGTCGATGGGATGATAGTCAGAGATTTTTGTCTGACAATCCATACCT TGTATGTGAAGAAACTGCTAAGTATCTTATTTTATGGTGTTTTCATCTAGAAGCAGAACA GAAAGGGGCTCTAATGGAACAAATAGCACATCAAGCTGTCGTAATGCAGTTTATTATGGA AATGGCCAAAAACTGTAATGTGGATCCAAGAGGATGTTTTCGTTTATTTTTCCAGAAAGC CAAAGCAGAGGAAGAAGGTTATTTTGAAGCTTTCAAAAATGAACTTGAAGCGTTCAAGTC AAGAGTCAGACTTTATTCTCAGTCACCAAGTTTTCAACCTGTTACAGTTCAGAATCATGT TCCCCATTCTGGTGTTGGATCTATAGGTTTATTAGAATCCTTACCACAGAATCCAGATTA TCTTCAGTATTCTATCAATACAGCTCCCTGCAGTTTAAACTCAGTGGTACATAAGGAAGA TGATGAACCCAAAATGATGGACACTGTATAATTTAGTTAAGACTGCTGAAGCCAAGTGAT ATTTTGTTACAAGAAAGGAAGAACTTGGCTATTTTCTTGACACTTTTATGGGTGCTGCAC TTTATTTTTGTTCGGTTTTTGATGGGAGGGGAAAAAAAGAGTACTGAAAGGTTTTGTAAA AATTTTTTTTTATGTGCTGCTAGGGTTTTTTTGCTTTGTTCTTTTCTGAAGAGAGGAATG GTACTGTATGTTGCAGGAAGTCAAACTGGACTTTTTGGGGGGGGTTTGGCTACTAAATTT GCCTTTAATCTTAGTATTCTCAATTTTGGAATCAAAGTATGAAAATCTGCACAAATGCAA TGTTTACAAGAACTGGTTGATTCTAGGAGGCATATGCTACAGTCTCTTTTTATATGGATA TGTACATGTCCTACTCTACAAAAAAATGATTAAAGATAAAAATGTACTTGTATCCTGCTA ATTTAGCTGTCAAATCTGCTATTTCATCATATTAAAAGCAATAAATCAGTAGCTGATAAT CTACTTTTCTAAATAAGCTGGGTGGTACAAATTAAAACAAAGTCTTTCCCCTTAAAATAA TATTACATTTGTTTTTTCGGCACCATCAGTTAAATC |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 226-519, gnl|bosTau2|chr8 (18599854-18599562) | |
| 226-519, gnl|Hg17|chr9 (4674873-4675165) | |
| 226-519, gnl|Mm7|chr19 (28694875-28695167) | |
| 719-845, gnl|bosTau2|chr8 (18593355-18593229) | |
| 719-845, gnl|canFam2|chr1 (96140774-96140926) | |
| 719-845, gnl|canFam2|chr20 (53737442-53737330) | |
| 719-845, gnl|danRer3|chr10 (2580352-2580489) | |
| 719-845, gnl|dasNov1|scaffold_9300 (12157-12005) | |
| 719-845, gnl|echTel1|scaffold_178424 (8709-8861) | |
| 719-845, gnl|echTel1|scaffold_242063 (863-739) | |
| 719-845, gnl|fr1|chrUn (248937278-248937130) | |
| 719-845, gnl|fr1|chrUn (67758333-67758455) | |
| 719-845, gnl|galGal2|chrUn (157862211-157862070) | |
| 719-845, gnl|hg17|chr5 (157346523-157346653) | |
| 719-845, gnl|hg17|chr9 (4687737-4687886) | |
| 719-845, gnl|Hg17|chr9 (4687754-4687880) | |
| 719-845, gnl|loxAfr1|scaffold_844 (93031-93183) | |
| 719-845, gnl|mm7|chr19 (28707384-28707540) | |
| 719-845, gnl|Mm7|chr19 (28707408-28707534) | |
| 719-845, gnl|mm7|chr9 (21018570-21018698) | |
| 719-845, gnl|monDom2|scaffold_106 (2062483-2062605) | |
| 719-845, gnl|monDom2|scaffold_5 (111966188-111966024) | |
| 719-845, gnl|oryCun1|scaffold_187007 (36189-36341) | |
| 719-845, gnl|oryCun1|scaffold_187007 (36323-36211) | |
| 719-845, gnl|panTro1|chr11 (4687295-4687444) | |
| 719-845, gnl|panTro1|chr4_random (17645486-17645616) | |
| 719-845, gnl|rheMac2|chr15 (72513740-72513591) | |
| 719-845, gnl|rheMac2|chr6 (154388749-154388879) | |
| 719-845, gnl|rn3|chr1 (232804224-232804377) | |
| 719-845, gnl|rn3|chr8 (20167860-20167987) | |
| 719-845, gnl|tetNig1|chr18 (8998934-8999056) | |
| 719-845, gnl|tetNig1|chr4 (840786-840922) | |
| 719-845, gnl|xenTro1|scaffold_52 (2264936-2264781) | |
| 719-845, gnl|xenTro1|scaffold_571 (198988-199111) | |
| 1007-1716, gnl|bosTau2|chr8 (18585307-18584608) | |
| 1007-1716, gnl|Hg17|chr9 (4696008-4696687) | |
| 1007-1716, gnl|Mm7|chr19 (28715841-28716523) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 226-519, gnl|bosTau2|chr8 (18599854-18599562) | |
| 226-519, gnl|Hg17|chr9 (4674873-4675165) | |
| 226-519, gnl|Mm7|chr19 (28694875-28695167) | |
| 719-845, gnl|bosTau2|chr8 (18593355-18593229) | |
| 719-845, gnl|canFam2|chr1 (96140774-96140926) | |
| 719-845, gnl|canFam2|chr20 (53737442-53737330) | |
| 719-845, gnl|danRer3|chr10 (2580352-2580489) | |
| 719-845, gnl|dasNov1|scaffold_9300 (12157-12005) | |
| 719-845, gnl|echTel1|scaffold_178424 (8709-8861) | |
| 719-845, gnl|echTel1|scaffold_242063 (863-739) | |
| 719-845, gnl|fr1|chrUn (248937278-248937130) | |
| 719-845, gnl|fr1|chrUn (67758333-67758455) | |
| 719-845, gnl|galGal2|chrUn (157862211-157862070) | |
| 719-845, gnl|hg17|chr5 (157346523-157346653) | |
| 719-845, gnl|hg17|chr9 (4687737-4687886) | |
| 719-845, gnl|Hg17|chr9 (4687754-4687880) | |
| 719-845, gnl|loxAfr1|scaffold_844 (93031-93183) | |
| 719-845, gnl|mm7|chr19 (28707384-28707540) | |
| 719-845, gnl|Mm7|chr19 (28707408-28707534) | |
| 719-845, gnl|mm7|chr9 (21018570-21018698) | |
| 719-845, gnl|monDom2|scaffold_106 (2062483-2062605) | |
| 719-845, gnl|monDom2|scaffold_5 (111966188-111966024) | |
| 719-845, gnl|oryCun1|scaffold_187007 (36189-36341) | |
| 719-845, gnl|oryCun1|scaffold_187007 (36323-36211) | |
| 719-845, gnl|panTro1|chr11 (4687295-4687444) | |
| 719-845, gnl|panTro1|chr4_random (17645486-17645616) | |
| 719-845, gnl|rheMac2|chr15 (72513740-72513591) | |
| 719-845, gnl|rheMac2|chr6 (154388749-154388879) | |
| 719-845, gnl|rn3|chr1 (232804224-232804377) | |
| 719-845, gnl|rn3|chr8 (20167860-20167987) | |
| 719-845, gnl|tetNig1|chr18 (8998934-8999056) | |
| 719-845, gnl|tetNig1|chr4 (840786-840922) | |
| 719-845, gnl|xenTro1|scaffold_52 (2264936-2264781) | |
| 719-845, gnl|xenTro1|scaffold_571 (198988-199111) | |
| 1007-1716, gnl|bosTau2|chr8 (18585307-18584608) | |
| 1007-1716, gnl|Hg17|chr9 (4696008-4696687) | |
| 1007-1716, gnl|Mm7|chr19 (28715841-28716523) |
| Expressed library(ies): 13 entry(ies) | More info |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
| nms (0.427716) | |
| tra (0.369276) | |
| ldo (0.194005) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| bla (0.124347) | |
| eje (0.0988338) |
| Expressed library(ies): 13 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| nms (0.427716) | |
| tra (0.369276) | |
| ldo (0.194005) | |
| mga (0.160205) | |
| tbr (0.154178) | |
| lun (0.150489) | |
| spl (0.143184) | |
| hyp (0.142837) | |
| pty (0.142714) | |
| nmm (0.132802) | |
| kid (0.129735) | |
| bla (0.124347) | |
| eje (0.0988338) |