Non-Coding RNA Search

Ss1.1-Pig4-TMW8046A06.3.5

Sequence:


               
               AAAACAAGCGTTTGAACCCACCTCAAGAGCAGGTCCCAGCAGCTAACAGTGGAGCTTGAC
TCCCTGCTCACATCTCCCAGGTCAGAGGCTTCAGGGCTGCATATGCTCTATGTCCCTGGT
GTGACGGGGTCTGTACCTATCAGGACCCTCCCTCCCTAGCATCCAGAGCTCCTGTTTTCC
CAGTGGTGCCCCTGGACTCCAGGCATGGAGATCTGCCAGGCTGAGATGCAGGGTTTGAGC
CTGAGAGGCTTGCACGGAAACATGAGCTGTGAATGAGGGTGTCTCACTCCCTCTGTGCTG
CTCATGCCCTCAGGACCCCAGGCTTCCCAATGGTGAGCACCCTTTCCTGTAGAGGCCTGG
GTGCCACAGCCCTGGCTCAAGTGGCCCAAACCCCTCGCCATCCAGTCCCTCAAGGCCTGC
CCTTAGCTACTTAGGACACAGGACCCCAGGGCATGACGAACAACCCATTTATGGTGGGCT
TCATACACAACTGCTCAGGGGTCCGGCATTTTAGCAAGAGAAACAAGCTCGAGGGACCTG
TTGTAGCGTTTCAGCCATGGATGAAGCCACATGGATGGTGACCATGGGGGTTGAGGCAGG
AACACTCAAGACAGCGGTTTCCAAGTTTTGCTGCACATGAATGTCACCTGGCAGCTTACT
CAGGGTGCTCTCTGTACCCCCAAATTCCAGTGCCTGGGGTGTGACCATCAGCAGCTTTGA
AAGACCCCATGATGGTTCCAAAGGGCATCACTGATTAGGAGTCGCTGTCAGAGGGTGTGA
AAGGCAGGCTCTGAAATAAACCAGAGCTGGGTGTGGGGCGCAGCTTAGCCTGTGTAACTG
CGGGCTTCTGGGTTCCAGATGCTTCGTTTACTACTTGTCAGAGCCCCGGGGAGGAGCCCC
ACTTTGCAGATGAAGGAACTGAGTCATGGGGTTCAGCAGGCCCCAGAGCTGGTGGTCAGG
CTGCTCCCATCTCACTGGGCCCAGGGTTTCATGGATCTCTAAGATCCGGCGACACAGTAT
CACTGTTCAGGTGAGGGCAGGTTAGAGGTGCCCCAGGTACGCATAGGGCGGGCTTCCCAC
AGCCATCAAGTTTAAGAAATTCCAGTATTTAAACCAGCATTAAAAATGAAGTTAATGAGG
AGTTCCTGTGTGGCTCAGTGGGTTAAGTACCCAGCATCGTCACTGCAGTAGCTCTGGTCG
CCGCTGTGACACAGATTAGATCTCTGTCCTGGGAACTTCCCCATGCCATGGGCGTGGCCA
AGATTTTTTTTTAAAATGAAGTCTTTGAAGAATTTTAATGACATGAGGAAATGTTCATGA
TGGAGTGATAGAGAATTAAAATGAGGATATAAAACCACTCATCACGATCTCATTTAGTGT
GTGTGTGTGTGTCTTAGAAAAGAGACTTGGAAGTAAACACACCAACATTTTCACAGGTTA
TATCCAAGTTATGAGATTATGGGTTAATTTTCCATTTTCTTTTAACTTTTCCTCATTTTC
CAAATTTTCCTCAGTAAGCAACTATTTCTATAATCAGGAGAGCTAATAAACTTTAGTTTT
AAAAAAATATGTCAGTGATAATGGTATTGTGGTTCATGTGTGCTCTTTAAGCCCTTGTCT
TTTAGAAACACATACTCTGGGGAGGCTAGAGGGGGCAGCCCTGGGGTGGGATCTGAAGGT
GTGGGTTAACCTGACTCCACGGTTCCCGGTGACGTGTCCGCTCTGGAACCTGGGCATGGC
AGGAAGACAGTCATGGACACACCCGTCCCAGACAGAACTCCAGGCAACATGAGGCTGGGG
CCTGCCCAGGTGAAGAAGACTCTGCAGAACCATCAATGCTGTTGAAGACGGGCTGCTTCC
TTGAGGAAAAGCCACTGGGAGAAATTTCTCTCAGGCCCCAAAATCTATAATATGAGGCCT
CTCCTGGAAAACCAGCTTGTTTTCATCCACAGATAGCAGAAACCTTGGAACAGACTGTGT
TTCTGTCTTTGCTTTGGCTTCTGGGAAGCTCCAAACCAAACTTATGACACACCTCTCCCA
CCTTCAAAGGACTTCATGGAATTTGTTTCTGTGTATGAATTCACTTTGGGCTTATTCTCT
TTCCTCACTGATTCCCTCATCTATTTATTTTCTGTCTTTTGTATGTTTTTCCTGAAAGCT
ACATCAATTATTTTTGGAAGGAGATAATTACGAATAAACAAATAGCATTGTAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAAACAAGCGTTTGAACCCACCTCAAGAGCAGGTCCCAGCAGCTAACAGTGGAGCTTGAC
TCCCTGCTCACATCTCCCAGGTCAGAGGCTTCAGGGCTGCATATGCTCTATGTCCCTGGT
GTGACGGGGTCTGTACCTATCAGGACCCTCCCTCCCTAGCATCCAGAGCTCCTGTTTTCC
CAGTGGTGCCCCTGGACTCCAGGCATGGAGATCTGCCAGGCTGAGATGCAGGGTTTGAGC
CTGAGAGGCTTGCACGGAAACATGAGCTGTGAATGAGGGTGTCTCACTCCCTCTGTGCTG
CTCATGCCCTCAGGACCCCAGGCTTCCCAATGGTGAGCACCCTTTCCTGTAGAGGCCTGG
GTGCCACAGCCCTGGCTCAAGTGGCCCAAACCCCTCGCCATCCAGTCCCTCAAGGCCTGC
CCTTAGCTACTTAGGACACAGGACCCCAGGGCATGACGAACAACCCATTTATGGTGGGCT
TCATACACAACTGCTCAGGGGTCCGGCATTTTAGCAAGAGAAACAAGCTCGAGGGACCTG
TTGTAGCGTTTCAGCCATGGATGAAGCCACATGGATGGTGACCATGGGGGTTGAGGCAGG
AACACTCAAGACAGCGGTTTCCAAGTTTTGCTGCACATGAATGTCACCTGGCAGCTTACT
CAGGGTGCTCTCTGTACCCCCAAATTCCAGTGCCTGGGGTGTGACCATCAGCAGCTTTGA
AAGACCCCATGATGGTTCCAAAGGGCATCACTGATTAGGAGTCGCTGTCAGAGGGTGTGA
AAGGCAGGCTCTGAAATAAACCAGAGCTGGGTGTGGGGCGCAGCTTAGCCTGTGTAACTG
CGGGCTTCTGGGTTCCAGATGCTTCGTTTACTACTTGTCAGAGCCCCGGGGAGGAGCCCC
ACTTTGCAGATGAAGGAACTGAGTCATGGGGTTCAGCAGGCCCCAGAGCTGGTGGTCAGG
CTGCTCCCATCTCACTGGGCCCAGGGTTTCATGGATCTCTAAGATCCGGCGACACAGTAT
CACTGTTCAGGTGAGGGCAGGTTAGAGGTGCCCCAGGTACGCATAGGGCGGGCTTCCCAC
AGCCATCAAGTTTAAGAAATTCCAGTATTTAAACCAGCATTAAAAATGAAGTTAATGAGG
AGTTCCTGTGTGGCTCAGTGGGTTAAGTACCCAGCATCGTCACTGCAGTAGCTCTGGTCG
CCGCTGTGACACAGATTAGATCTCTGTCCTGGGAACTTCCCCATGCCATGGGCGTGGCCA
AGATTTTTTTTTAAAATGAAGTCTTTGAAGAATTTTAATGACATGAGGAAATGTTCATGA
TGGAGTGATAGAGAATTAAAATGAGGATATAAAACCACTCATCACGATCTCATTTAGTGT
GTGTGTGTGTGTCTTAGAAAAGAGACTTGGAAGTAAACACACCAACATTTTCACAGGTTA
TATCCAAGTTATGAGATTATGGGTTAATTTTCCATTTTCTTTTAACTTTTCCTCATTTTC
CAAATTTTCCTCAGTAAGCAACTATTTCTATAATCAGGAGAGCTAATAAACTTTAGTTTT
AAAAAAATATGTCAGTGATAATGGTATTGTGGTTCATGTGTGCTCTTTAAGCCCTTGTCT
TTTAGAAACACATACTCTGGGGAGGCTAGAGGGGGCAGCCCTGGGGTGGGATCTGAAGGT
GTGGGTTAACCTGACTCCACGGTTCCCGGTGACGTGTCCGCTCTGGAACCTGGGCATGGC
AGGAAGACAGTCATGGACACACCCGTCCCAGACAGAACTCCAGGCAACATGAGGCTGGGG
CCTGCCCAGGTGAAGAAGACTCTGCAGAACCATCAATGCTGTTGAAGACGGGCTGCTTCC
TTGAGGAAAAGCCACTGGGAGAAATTTCTCTCAGGCCCCAAAATCTATAATATGAGGCCT
CTCCTGGAAAACCAGCTTGTTTTCATCCACAGATAGCAGAAACCTTGGAACAGACTGTGT
TTCTGTCTTTGCTTTGGCTTCTGGGAAGCTCCAAACCAAACTTATGACACACCTCTCCCA
CCTTCAAAGGACTTCATGGAATTTGTTTCTGTGTATGAATTCACTTTGGGCTTATTCTCT
TTCCTCACTGATTCCCTCATCTATTTATTTTCTGTCTTTTGTATGTTTTTCCTGAAAGCT
ACATCAATTATTTTTGGAAGGAGATAATTACGAATAAACAAATAGCATTGTAAAAAAAAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               316-431, - strand, RNAz p=0.954883
               

               
               1823-1936, - strand, RNAz p=0.846164

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               316-431, - strand, RNAz p=0.954883
               

               
               1823-1936, - strand, RNAz p=0.846164

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               316-1041, gnl|bosTau2|chr2 (44329752-44329004)
               

               
               316-1041, gnl|Hg17|chr2 (119916230-119916968)
               


               
               1785-2214, gnl|bosTau2|chr2 (44326599-44326177)
               

               
               1785-2214, gnl|Hg17|chr2 (119919388-119919823)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               316-1041, gnl|bosTau2|chr2 (44329752-44329004)
               

               
               316-1041, gnl|Hg17|chr2 (119916230-119916968)
               


               
               1785-2214, gnl|bosTau2|chr2 (44326599-44326177)
               

               
               1785-2214, gnl|Hg17|chr2 (119919388-119919823)

Expressed library(ies): 12 entry(ies)

More info

Expressed library(ies): 12 entry(ies)

Help | Less info


               
               jej (0.395687)
               

               
               ill (0.351185)
               

               
               nje (0.33184)
               

               
               kid (0.259471)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               jej (0.395687)
               

               
               ill (0.351185)
               

               
               nje (0.33184)
               

               
               kid (0.259471)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               cje (0.165235)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               ute (0.132784)
               

               
               eep (0.122564)
               

               
               eje (0.0988338)

	316-431, - strand, RNAz p=0.954883
	1823-1936, - strand, RNAz p=0.846164

	316-1041, gnl\|bosTau2\|chr2 (44329752-44329004)
	316-1041, gnl\|Hg17\|chr2 (119916230-119916968)

	1785-2214, gnl\|bosTau2\|chr2 (44326599-44326177)
	1785-2214, gnl\|Hg17\|chr2 (119919388-119919823)

	jej (0.395687)
	ill (0.351185)
	nje (0.33184)
	kid (0.259471)
	sin (0.174948)
	rec (0.17307)
	cje (0.165235)
	spl (0.143184)
	che (0.136314)
	ute (0.132784)
	eep (0.122564)
	eje (0.0988338)