Non-Coding RNA Search

Ss1.1-Pig4-TMW8046A09.5

Sequence:


               
               GCGGTATTTCGCCTCCTACATGGAGCAGCGCCTCATGAAGGGAGGAGATCTGCCCAGCGT
GGAAGAGGTGGAGGTGCCCGTCCCCCCACTCCTGCTGCAGTGGGTCAAGACGGATCAGGC
CCTACTCATGCTGTTTAGTGACGGCACCGTCCAGGTGAACTTCTATGGAGACCACACCAA
GCTGATCCTCAGTGGCTGGGAGCCCCTCCTCGTGACTTTCGTGGCCCGAAACCGCAGTGC
TTGCACTTACCTCGCGTCCCACCTTCGCCAGCTGGGCTGCTCCCCGGACCTCCGGCAGCG
GCTCCGCTACGCTCTGTGCCTGCTCCGGGACCGCTGCCCCGTCTAGGTGCCAACTGCAGG
GCCGGCCCCCAGGCCCTCAGGCCTGGGGCCCGTGCCTGTCAGACTCTGGCCCTGGCCGTC
GTGGCGCTTCCTGTCCCTTGGTGCCTCACTGGGGGCTCCGGGCCGAATCCCCCAGGGAAT
CAGGGACCAGCTTTACTAGGGTTGGAGGCTGCCTCCTACCCCTTCTCCAAGAAAAGCCTG
AGCCTTAGCCCCCAGCCAGGGGGCATTATTTATGGACCACTTTTATTTATTGACAGACAT
TTATTTATTGGGCTGGGAGCCCCAGGGAGGGCCTCCTCCTAGGATAATAAACCATTTTTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGTATTTCGCCTCCTACATGGAGCAGCGCCTCATGAAGGGAGGAGATCTGCCCAGCGT
GGAAGAGGTGGAGGTGCCCGTCCCCCCACTCCTGCTGCAGTGGGTCAAGACGGATCAGGC
CCTACTCATGCTGTTTAGTGACGGCACCGTCCAGGTGAACTTCTATGGAGACCACACCAA
GCTGATCCTCAGTGGCTGGGAGCCCCTCCTCGTGACTTTCGTGGCCCGAAACCGCAGTGC
TTGCACTTACCTCGCGTCCCACCTTCGCCAGCTGGGCTGCTCCCCGGACCTCCGGCAGCG
GCTCCGCTACGCTCTGTGCCTGCTCCGGGACCGCTGCCCCGTCTAGGTGCCAACTGCAGG
GCCGGCCCCCAGGCCCTCAGGCCTGGGGCCCGTGCCTGTCAGACTCTGGCCCTGGCCGTC
GTGGCGCTTCCTGTCCCTTGGTGCCTCACTGGGGGCTCCGGGCCGAATCCCCCAGGGAAT
CAGGGACCAGCTTTACTAGGGTTGGAGGCTGCCTCCTACCCCTTCTCCAAGAAAAGCCTG
AGCCTTAGCCCCCAGCCAGGGGGCATTATTTATGGACCACTTTTATTTATTGACAGACAT
TTATTTATTGGGCTGGGAGCCCCAGGGAGGGCCTCCTCCTAGGATAATAAACCATTTTTG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               311-660, - strand, RNAz p=0.998377

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               311-660, - strand, RNAz p=0.998377

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               477-669, - strand, RNAmicro p=0.998619

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               477-669, - strand, RNAmicro p=0.998619

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               152-660, gnl|bosTau2|chr3 (68162194-68162704)
               

               
               152-660, gnl|Hg17|chr1 (44940249-44940750)
               

               
               152-660, gnl|Mm7|chr4 (116505620-116505099)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               152-660, gnl|bosTau2|chr3 (68162194-68162704)
               

               
               152-660, gnl|Hg17|chr1 (44940249-44940750)
               

               
               152-660, gnl|Mm7|chr4 (116505620-116505099)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               ton (0.1755)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)

	152-660, gnl\|bosTau2\|chr3 (68162194-68162704)
	152-660, gnl\|Hg17\|chr1 (44940249-44940750)
	152-660, gnl\|Mm7\|chr4 (116505620-116505099)