Non-Coding RNA Search

Ss1.1-Pig4-TMW8046B01.3

Sequence:


               
               CCAAGGCCAGCAGTCGCCGCAGCAGCTTCAGAGTGGAGGAGGAGTCCTGATCAGGCCTCA
CCCCTCCCCTGGGGCGTCCCCACCCAGGACAGGAGGACCAAGTCTCGGATGAGGCCCCGT
CTTTTCCCCCCACCTTCCCATGAGACTGCCCTGCCCAGGTGTACAGGGGATGAGGAGATG
AGATGAAGCCCCACCCCTGTAACCAGGCAAGGAGGAGGAGTCAGATGAGGCCCCGCCCCT
TCCCCATCGGAGAGGCCAGCGCAAGTATTTCAGACCTGGAGAAGGCAGGGACGGCAGGGC
CTGGCCCCGGCAGATCAGCAGCCTCACCTCTGCCCTGTGGGACCTGCCCTTGCCCCAGGT
GAGGGAAGGAGATAGGATGAGGTCGAGGGGCCCCTGGCCCCTAGGGACTGTCCTAGCCAG
GTTTCCTGGGATGAAGCGGTGGCAGGATACAAGGCTCGATTTCCTGGCGCCATCAGTATA
GTCCCTCCTGGCAAGGAAGAGTCAAAATGAGGGCGGTTCCACTCTGGGGGTTTAAGCCCT
GCCCTTTCCCTGTGAACCCTGTCCTGCCCAGGCAAGGAACAGAAGTGAGGATGAGAGCCA
GCCCCTTCACCTGGGAACTCAGTCCTGGCCTTCTAGCCGTGGAGGAGTCAGGCCCCGCCC
CTTCCCTATAGGAATAGCCCAGCGCAGGTATTTCAGGCATGGAGGAGTTCGTAAGATCAG
GCAACTTTGAGATCACAGCAACTTCCCTTCCAAGCATTCCACACTGCAGGGAGGAGTGGT
ACTTAAGCTCCCCCGCCTTAACCTGGACCAAGTGACCTAACCTAGGAGAGCTTTAAACGA
CCTTGCCCTTGAAGGTGGGGGCAGATCTTAACATCTTGTGGGTTGACATTCCAGATCCCA
ATCAGGAGTGAGTGAGAGTGAGACCTCCACCCTGGGGCAGAGGTTTGCCTCCTTCCTTGC
AAGGAGGAGACTTGGGTAGCGATGGAGCTCAGCCGGGTACTGAATGCCCAGAACCCACAA
CCCAGTACTGTTTGTCAACTTGTAGCCCAACAGGATGCAGGAAAGGGGCCTTTCCAGGGA
GTTCCCCAGCCTAGGAAAAATGTGGAAGCCTGTCCCACCAAGGCAGAGGCCTAGAGGGAG
GATTGCAAAAGCGTATGTGTCCCCTCTTTTGTTAATCTGATTTTTTTTATTGACACCCCC
TACTCAGAAGCTAGCTCACCCCCAACCTCTGGCCTCCACCCAGTTCTCCATTTGGAGAAA
TCATCCCCATTTCAGAGTTATCAAGAGACACTCCGTGCCCGTTCTCATCCACAAACACCC
AAGTCGTCAGCTTTGGATTGGGGCCAAGCCCCAAGGAGGGTGTACTGAGGGGTCTGTAGG
TTTGTGATTAAAATAATAAATGCTAGGCGTGTTTGATGCGCTTTTAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAAGGCCAGCAGTCGCCGCAGCAGCTTCAGAGTGGAGGAGGAGTCCTGATCAGGCCTCA
CCCCTCCCCTGGGGCGTCCCCACCCAGGACAGGAGGACCAAGTCTCGGATGAGGCCCCGT
CTTTTCCCCCCACCTTCCCATGAGACTGCCCTGCCCAGGTGTACAGGGGATGAGGAGATG
AGATGAAGCCCCACCCCTGTAACCAGGCAAGGAGGAGGAGTCAGATGAGGCCCCGCCCCT
TCCCCATCGGAGAGGCCAGCGCAAGTATTTCAGACCTGGAGAAGGCAGGGACGGCAGGGC
CTGGCCCCGGCAGATCAGCAGCCTCACCTCTGCCCTGTGGGACCTGCCCTTGCCCCAGGT
GAGGGAAGGAGATAGGATGAGGTCGAGGGGCCCCTGGCCCCTAGGGACTGTCCTAGCCAG
GTTTCCTGGGATGAAGCGGTGGCAGGATACAAGGCTCGATTTCCTGGCGCCATCAGTATA
GTCCCTCCTGGCAAGGAAGAGTCAAAATGAGGGCGGTTCCACTCTGGGGGTTTAAGCCCT
GCCCTTTCCCTGTGAACCCTGTCCTGCCCAGGCAAGGAACAGAAGTGAGGATGAGAGCCA
GCCCCTTCACCTGGGAACTCAGTCCTGGCCTTCTAGCCGTGGAGGAGTCAGGCCCCGCCC
CTTCCCTATAGGAATAGCCCAGCGCAGGTATTTCAGGCATGGAGGAGTTCGTAAGATCAG
GCAACTTTGAGATCACAGCAACTTCCCTTCCAAGCATTCCACACTGCAGGGAGGAGTGGT
ACTTAAGCTCCCCCGCCTTAACCTGGACCAAGTGACCTAACCTAGGAGAGCTTTAAACGA
CCTTGCCCTTGAAGGTGGGGGCAGATCTTAACATCTTGTGGGTTGACATTCCAGATCCCA
ATCAGGAGTGAGTGAGAGTGAGACCTCCACCCTGGGGCAGAGGTTTGCCTCCTTCCTTGC
AAGGAGGAGACTTGGGTAGCGATGGAGCTCAGCCGGGTACTGAATGCCCAGAACCCACAA
CCCAGTACTGTTTGTCAACTTGTAGCCCAACAGGATGCAGGAAAGGGGCCTTTCCAGGGA
GTTCCCCAGCCTAGGAAAAATGTGGAAGCCTGTCCCACCAAGGCAGAGGCCTAGAGGGAG
GATTGCAAAAGCGTATGTGTCCCCTCTTTTGTTAATCTGATTTTTTTTATTGACACCCCC
TACTCAGAAGCTAGCTCACCCCCAACCTCTGGCCTCCACCCAGTTCTCCATTTGGAGAAA
TCATCCCCATTTCAGAGTTATCAAGAGACACTCCGTGCCCGTTCTCATCCACAAACACCC
AAGTCGTCAGCTTTGGATTGGGGCCAAGCCCCAAGGAGGGTGTACTGAGGGGTCTGTAGG
TTTGTGATTAAAATAATAAATGCTAGGCGTGTTTGATGCGCTTTTAAC

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               40-197, - strand, RNAz p=0.912515

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               40-197, - strand, RNAz p=0.912515

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-212, gnl|bosTau2|chrX (26124281-26124492)
               

               
               1-212, gnl|Hg17|chrX (48643966-48643713)
               

               
               1-212, gnl|Mm7|chrX (6207032-6207208)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-212, gnl|bosTau2|chrX (26124281-26124492)
               

               
               1-212, gnl|Hg17|chrX (48643966-48643713)
               

               
               1-212, gnl|Mm7|chrX (6207032-6207208)

Expressed library(ies): 9 entry(ies)

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Expressed library(ies): 9 entry(ies)

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               cga (0.279096)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               clu (0.119646)

Expressed library(ies): 9 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cga (0.279096)
               

               
               nje (0.16592)
               

               
               cje (0.165235)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               clu (0.119646)

	1-212, gnl\|bosTau2\|chrX (26124281-26124492)
	1-212, gnl\|Hg17\|chrX (48643966-48643713)
	1-212, gnl\|Mm7\|chrX (6207032-6207208)

	cga (0.279096)
	nje (0.16592)
	cje (0.165235)
	ste (0.135208)
	pla (0.133672)
	ute (0.132784)
	cov (0.132153)
	cly (0.120642)
	clu (0.119646)