Non-Coding RNA Search

Ss1.1-Pig4-TMW8046B19.5

Sequence:


               
               ATGTATATTTAATAGCCTTTTTAAAGCCCTCATGCCAAAAAAAAAAAACCACTCGAGTAA
ACATTTTAATTTTTAATAGGTGCATATCTGTCGTATGCTCATTTCTCTAAAAAACATAGG
AAAGACAGTTTACCAAGTCTTGTAGAAACAATACTATAAAAGAGCAGGATAAAAACAGAG
GCCTGTTCTTTACCTGTCACCATGGATTTTGCAAGACCTCTGTTCCTACAGAGGAGGGAA
ACAATGAGGAAGGGCTCTCTTTCCTTAGTGCCTTTTAAGCACCGATCGAACTTTCTGGAA
GCTTTGTTGGGCATGATGCAGGCTGCAGATCTGGTGCGGTTGTGGCTCAGCAGGAGGCTC
CACCAGCTGGGAGGTCCTTTGTCATTCTGCACACGTGTGAGTAACAGCTATAATCTATGA
GTTGTACAGAGTAGGTGAAACCGTACAGCACCGGCTCTACCACTATGAGTGAAGATAATA
AGCATGTGTCGTTACCCAACATAGAACCACAGACAGGTTTCAGAAGAACACCAAACCCTT
AATCTTGCCAAGCGTACATGAGCTCTTCTCCCAGTGAGCTAGGCTGTGTCTCCCTGTATA
CCCTTAAACAATACAACCGTAAGCTTACAAGAAAAAGTTCCTATACCAAATAATCTTATG
AGTCCAAGGACAGAAGCAACACAAGTAGAATCATTTATTCCTCTTCTAAGCTTCTGAAAT
TTCTAAGCTAGATTGTTGACAGAACTGTGTCATGGTTGTGTGTTATGTTTGCTGGGGGCT
GGTTTTGCTTTCTGATTTTTTTTTTCCCCCTAAACCTTGATGTTACAGGTAACCTATGTT
CTGCATCAATGAGGAAAAAATAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGTATATTTAATAGCCTTTTTAAAGCCCTCATGCCAAAAAAAAAAAACCACTCGAGTAA
ACATTTTAATTTTTAATAGGTGCATATCTGTCGTATGCTCATTTCTCTAAAAAACATAGG
AAAGACAGTTTACCAAGTCTTGTAGAAACAATACTATAAAAGAGCAGGATAAAAACAGAG
GCCTGTTCTTTACCTGTCACCATGGATTTTGCAAGACCTCTGTTCCTACAGAGGAGGGAA
ACAATGAGGAAGGGCTCTCTTTCCTTAGTGCCTTTTAAGCACCGATCGAACTTTCTGGAA
GCTTTGTTGGGCATGATGCAGGCTGCAGATCTGGTGCGGTTGTGGCTCAGCAGGAGGCTC
CACCAGCTGGGAGGTCCTTTGTCATTCTGCACACGTGTGAGTAACAGCTATAATCTATGA
GTTGTACAGAGTAGGTGAAACCGTACAGCACCGGCTCTACCACTATGAGTGAAGATAATA
AGCATGTGTCGTTACCCAACATAGAACCACAGACAGGTTTCAGAAGAACACCAAACCCTT
AATCTTGCCAAGCGTACATGAGCTCTTCTCCCAGTGAGCTAGGCTGTGTCTCCCTGTATA
CCCTTAAACAATACAACCGTAAGCTTACAAGAAAAAGTTCCTATACCAAATAATCTTATG
AGTCCAAGGACAGAAGCAACACAAGTAGAATCATTTATTCCTCTTCTAAGCTTCTGAAAT
TTCTAAGCTAGATTGTTGACAGAACTGTGTCATGGTTGTGTGTTATGTTTGCTGGGGGCT
GGTTTTGCTTTCTGATTTTTTTTTTCCCCCTAAACCTTGATGTTACAGGTAACCTATGTT
CTGCATCAATGAGGAAAAAATAAA

Aligned organism(s): 1 entry(ies)

More info

Aligned organism(s): 1 entry(ies)

Help | Less info


               
               299-864, gnl|bosTau2|chr29 (32155175-32155740)

Aligned organism(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               299-864, gnl|bosTau2|chr29 (32155175-32155740)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mcp (0.170648)
               

               
               fhi (0.169578)
               

               
               cje (0.165235)
               

               
               lin (0.145603)
               

               
               csk (0.140746)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               med (0.116252)

	mcp (0.170648)
	fhi (0.169578)
	cje (0.165235)
	lin (0.145603)
	csk (0.140746)
	ova (0.129132)
	thg (0.126791)
	eru (0.120048)
	pgl (0.118483)
	med (0.116252)