Non-Coding RNA Search

Ss1.1-Pig4-TMW8046B22.3

Sequence:


               
               ATGATCATCTTGGGAGTGATTTGCGCCATCATCCTCATCATCATCATTGGTGAGTCGGGC
GGGAGTGGCCGGGCCCCTTTGTTGGAGAGGTTTCCCCCCTGACGTCTGGGTTTTGAAGGT
CATTAACCTCGTTTTTACTATTCAGCAAAGAGCACACAGAGCTGCCAATAGCAGTTCTGA
TTCATCTAGCACCCCAAACCTCAATGTTGTTGAGCTTGTACTTTGCCTGGTTCTGGGCAA
TTTCTGGTAAGATTTTTGGAAACCGGAAAGCCGGTGGAGATCTCCACTGCTCCCTTGAGG
ACCCTTTGGGTTTGTCCAGTATGGGAACCCTGGAATTGGGGTGTGGGGGAGCAGCGAAGA
CTCAGGGGCTTGAGAAATGGCTAGGAAGCCAACCACCCTATTGGTTGAGAGCTGTGGTCT
CAGAGGCTCCGAGGATTCGGGGTCTGTGGCCCCAAAGCCATACCGTGACGTTGAGGAGAC
AGGTCCTGGAGCGGGACCAGAAGCTGTCGGAACTGGACGACCGCGCCGACGCACTCCAGG
CGGGGGCCTCCCAGTTTGAAACAAGTGCAGCCAAGCTCAAGCGCAAATATTGGTGGAAAA
ACCTCAAGATGATGATCATCTTGGGAGTGATTTGCGCCATCATCCTCATCATCATCATTG
TTTACTTCAGCTCTTAAACCCCTGAGGAGCCTGCCCTGCCCAGAGAAGGGCCTCTCCCCC
CCATCCCCAGCCGCTCCTCCACCTCTCAGCCATATCTTCCAGCCCCCTCCTCCCCCGGGA
TCCGCGTGTGTGTGTCGTGTGTGTGCCCCCTTGTAAATAGCCAGCTGTTATTTATACATA
TATAATATTATATATATTTGGTCTGTTTGTAGTTTTATTACTAGAAGATTTTTCCGGTTG
TCCTTAACACCCCTTCCTGAGGTTCCCATCGCCTCCTTTTGCCCCTCCTCTCCTCTCCTT
TCCCTCTCTTCCTCACCGGCCCCAACTCCCTTCATTTGCATCTGCTATGCAATAGTCCCT
CTTCCTCCCCTCCTTCCCTTGGATTTAGCTGATCCTTCCTCCCGCCCTGGTCTTCCCCAT
ACACCCCCTCACCCCACCCCACCCCCCGACAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGATCATCTTGGGAGTGATTTGCGCCATCATCCTCATCATCATCATTGGTGAGTCGGGC
GGGAGTGGCCGGGCCCCTTTGTTGGAGAGGTTTCCCCCCTGACGTCTGGGTTTTGAAGGT
CATTAACCTCGTTTTTACTATTCAGCAAAGAGCACACAGAGCTGCCAATAGCAGTTCTGA
TTCATCTAGCACCCCAAACCTCAATGTTGTTGAGCTTGTACTTTGCCTGGTTCTGGGCAA
TTTCTGGTAAGATTTTTGGAAACCGGAAAGCCGGTGGAGATCTCCACTGCTCCCTTGAGG
ACCCTTTGGGTTTGTCCAGTATGGGAACCCTGGAATTGGGGTGTGGGGGAGCAGCGAAGA
CTCAGGGGCTTGAGAAATGGCTAGGAAGCCAACCACCCTATTGGTTGAGAGCTGTGGTCT
CAGAGGCTCCGAGGATTCGGGGTCTGTGGCCCCAAAGCCATACCGTGACGTTGAGGAGAC
AGGTCCTGGAGCGGGACCAGAAGCTGTCGGAACTGGACGACCGCGCCGACGCACTCCAGG
CGGGGGCCTCCCAGTTTGAAACAAGTGCAGCCAAGCTCAAGCGCAAATATTGGTGGAAAA
ACCTCAAGATGATGATCATCTTGGGAGTGATTTGCGCCATCATCCTCATCATCATCATTG
TTTACTTCAGCTCTTAAACCCCTGAGGAGCCTGCCCTGCCCAGAGAAGGGCCTCTCCCCC
CCATCCCCAGCCGCTCCTCCACCTCTCAGCCATATCTTCCAGCCCCCTCCTCCCCCGGGA
TCCGCGTGTGTGTGTCGTGTGTGTGCCCCCTTGTAAATAGCCAGCTGTTATTTATACATA
TATAATATTATATATATTTGGTCTGTTTGTAGTTTTATTACTAGAAGATTTTTCCGGTTG
TCCTTAACACCCCTTCCTGAGGTTCCCATCGCCTCCTTTTGCCCCTCCTCTCCTCTCCTT
TCCCTCTCTTCCTCACCGGCCCCAACTCCCTTCATTTGCATCTGCTATGCAATAGTCCCT
CTTCCTCCCCTCCTTCCCTTGGATTTAGCTGATCCTTCCTCCCGCCCTGGTCTTCCCCAT
ACACCCCCTCACCCCACCCCACCCCCCGACAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|89782|pir||JN0011

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|89782|pir||JN0011

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               472-608, gnl|bosTau2|chr16 (29866043-29866178)
               

               
               472-608, gnl|Hg17|chr1 (7771509-7771644)
               

               
               472-608, gnl|Mm7|chr4 (150040594-150040459)
               


               
               660-1069, gnl|bosTau2|chr2 (77488393-77487983)
               

               
               660-1069, gnl|Hg17|chr17 (8004915-8004507)
               

               
               660-1069, gnl|Mm7|chr11 (69172223-69172608)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               472-608, gnl|bosTau2|chr16 (29866043-29866178)
               

               
               472-608, gnl|Hg17|chr1 (7771509-7771644)
               

               
               472-608, gnl|Mm7|chr4 (150040594-150040459)
               


               
               660-1069, gnl|bosTau2|chr2 (77488393-77487983)
               

               
               660-1069, gnl|Hg17|chr17 (8004915-8004507)
               

               
               660-1069, gnl|Mm7|chr11 (69172223-69172608)

Expressed library(ies): 13 entry(ies)

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Expressed library(ies): 13 entry(ies)

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               fhi (0.339155)
               

               
               hyp (0.285673)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               cli (0.152812)
               

               
               lin (0.145603)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

Expressed library(ies): 13 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fhi (0.339155)
               

               
               hyp (0.285673)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               cbe (0.239234)
               

               
               fcc (0.197785)
               

               
               eye (0.170503)
               

               
               cli (0.152812)
               

               
               lin (0.145603)
               

               
               eep (0.122564)
               

               
               ebs (0.118301)
               

               
               med (0.116252)
               

               
               eje (0.0988338)

	472-608, gnl\|bosTau2\|chr16 (29866043-29866178)
	472-608, gnl\|Hg17\|chr1 (7771509-7771644)
	472-608, gnl\|Mm7\|chr4 (150040594-150040459)

	660-1069, gnl\|bosTau2\|chr2 (77488393-77487983)
	660-1069, gnl\|Hg17\|chr17 (8004915-8004507)
	660-1069, gnl\|Mm7\|chr11 (69172223-69172608)

	fhi (0.339155)
	hyp (0.285673)
	hlv (0.278513)
	fce (0.271592)
	cbe (0.239234)
	fcc (0.197785)
	eye (0.170503)
	cli (0.152812)
	lin (0.145603)
	eep (0.122564)
	ebs (0.118301)
	med (0.116252)
	eje (0.0988338)