Non-Coding RNA Search

Ss1.1-Pig4-TMW8046C03.5

Sequence:


               
               CTTGGGTGGGGCAGAGAGAAGCACAAGCACCTTCTCCCGAAAGACCTGGGATAATTTGCT
CAGCTTTCCCTTTCCTGCTCTTCGTCGGCTGCTCGTTTGCAATCCTCCTGCCCGGAACTG
CAAGGCTTTTAGCCTAATCCCCTTCTGAGAGGAAGATTATCTCTTCTCAGAATCCGTACC
ACATCCCATCAGTGGTCTGTCTTCCATCAGATTTGCAACACTGACCTCTTTTAAGCTCTT
AATTCCCCCCCAGGGTTGTTTGGTCAGGTTGCAGTGAGGGTATTTCTCCTCCTCCCCTNC
ACGCCCCCTCATGCCCTGAGATTAAGGAATACCTTTCAATGTTCAAAACGGCGGTGTTTC
GTCCTTTCACATGGGAGGCCACCACTTTGAGCATGAAATCAATTTACTAGTGTTTAGTAT
TTTTTTTAAACGATTTGGAAAACTTTCTTACCTTACAAGATCTTCACAAGCTTCAAAAAG
ACTTTTATGGCCAGAATCCAACAAGAGCTCTCTTTTCGGAATTGTGCCTGAGTTGGTGAT
GGTTGCTCTAACATTGATAAATAAAACTTCTAAGCACAAAGTTCACAGATGGTAAATGTA
AAACTTTTTTCTTCATAATTTTATAAAATTAGCAATATCCTTGGGGAAGGGGATCTTTAT
CCTATTGGTCCCTGATGCGCTCGTGGTACGTGTGCACAGACGTCCCCCCGCCCCAGGTTC
CTCGTCACCAGCAGCCCAGAGTACCTGCACATCCTGCATTTTGTTCCTCTGCCCCTTCAT
TCCCACATGTCCTCAAACAAGTATTTCTGGGGTCTAAACTAGAAAAGGAGTAGTGCCGGC
CACACTGGGGGTGGTATGTTCAACGCCCTGTGTGGTTATGGAGCGGGTGCCTCACGTGGA
GCCCAGGGAGAACTGTGGAGATGGCTGGCTGGTAATGGTCAGAATGGCCACAAGGGGGCG
CGCGTAGCTCTCCTTGTATATCCATTCTTGCAACAAGGGGCTTTTTTATACAGGGTACCT
GAACAAAACTCATGACTTAAGTTTCTGATTGTGTGTATCTGATTTTCAGTCATTTTGATA
GCTTTATAAGAAAAATGCCTTCCTTTGAAACGAGAGTAGGGCTCTTCCTTTCTCCTTCCC
TGTGATCCTCATACTAGGGTGAGAAACACGTAAGAGGTGTTTGAGGTGCTGTGGTTGCTG
TGGGAAGCACGAATGTTCTCTGGTAGAACTCCCTGCAAAGCTTAGTAACTCGAGCCAGCA
GCCAAGATAGAGAAGAAATCTGGACTGTGGCATACGTGATTTCTCATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGGGTGGGGCAGAGAGAAGCACAAGCACCTTCTCCCGAAAGACCTGGGATAATTTGCT
CAGCTTTCCCTTTCCTGCTCTTCGTCGGCTGCTCGTTTGCAATCCTCCTGCCCGGAACTG
CAAGGCTTTTAGCCTAATCCCCTTCTGAGAGGAAGATTATCTCTTCTCAGAATCCGTACC
ACATCCCATCAGTGGTCTGTCTTCCATCAGATTTGCAACACTGACCTCTTTTAAGCTCTT
AATTCCCCCCCAGGGTTGTTTGGTCAGGTTGCAGTGAGGGTATTTCTCCTCCTCCCCTNC
ACGCCCCCTCATGCCCTGAGATTAAGGAATACCTTTCAATGTTCAAAACGGCGGTGTTTC
GTCCTTTCACATGGGAGGCCACCACTTTGAGCATGAAATCAATTTACTAGTGTTTAGTAT
TTTTTTTAAACGATTTGGAAAACTTTCTTACCTTACAAGATCTTCACAAGCTTCAAAAAG
ACTTTTATGGCCAGAATCCAACAAGAGCTCTCTTTTCGGAATTGTGCCTGAGTTGGTGAT
GGTTGCTCTAACATTGATAAATAAAACTTCTAAGCACAAAGTTCACAGATGGTAAATGTA
AAACTTTTTTCTTCATAATTTTATAAAATTAGCAATATCCTTGGGGAAGGGGATCTTTAT
CCTATTGGTCCCTGATGCGCTCGTGGTACGTGTGCACAGACGTCCCCCCGCCCCAGGTTC
CTCGTCACCAGCAGCCCAGAGTACCTGCACATCCTGCATTTTGTTCCTCTGCCCCTTCAT
TCCCACATGTCCTCAAACAAGTATTTCTGGGGTCTAAACTAGAAAAGGAGTAGTGCCGGC
CACACTGGGGGTGGTATGTTCAACGCCCTGTGTGGTTATGGAGCGGGTGCCTCACGTGGA
GCCCAGGGAGAACTGTGGAGATGGCTGGCTGGTAATGGTCAGAATGGCCACAAGGGGGCG
CGCGTAGCTCTCCTTGTATATCCATTCTTGCAACAAGGGGCTTTTTTATACAGGGTACCT
GAACAAAACTCATGACTTAAGTTTCTGATTGTGTGTATCTGATTTTCAGTCATTTTGATA
GCTTTATAAGAAAAATGCCTTCCTTTGAAACGAGAGTAGGGCTCTTCCTTTCTCCTTCCC
TGTGATCCTCATACTAGGGTGAGAAACACGTAAGAGGTGTTTGAGGTGCTGTGGTTGCTG
TGGGAAGCACGAATGTTCTCTGGTAGAACTCCCTGCAAAGCTTAGTAACTCGAGCCAGCA
GCCAAGATAGAGAAGAAATCTGGACTGTGGCATACGTGATTTCTCATC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               201-319, - strand, RNAz p=0.684743

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               201-319, - strand, RNAz p=0.684743

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               3-677, gnl|bosTau2|chr10 (55543234-55543890)
               

               
               3-677, gnl|Hg17|chr14 (68778256-68778914)
               

               
               3-677, gnl|Mm7|chr12 (78460404-78461005)
               


               
               729-1304, gnl|bosTau2|chr10 (55544215-55544805)
               

               
               729-1304, gnl|Hg17|chr14 (68778978-68779582)
               

               
               729-1304, gnl|Mm7|chr12 (78461077-78461657)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-677, gnl|bosTau2|chr10 (55543234-55543890)
               

               
               3-677, gnl|Hg17|chr14 (68778256-68778914)
               

               
               3-677, gnl|Mm7|chr12 (78460404-78461005)
               


               
               729-1304, gnl|bosTau2|chr10 (55544215-55544805)
               

               
               729-1304, gnl|Hg17|chr14 (68778978-68779582)
               

               
               729-1304, gnl|Mm7|chr12 (78461077-78461657)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               duo (0.172801)
               

               
               lnt (0.142308)

Expressed library(ies): 2 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)
               

               
               lnt (0.142308)

	3-677, gnl\|bosTau2\|chr10 (55543234-55543890)
	3-677, gnl\|Hg17\|chr14 (68778256-68778914)
	3-677, gnl\|Mm7\|chr12 (78460404-78461005)

	729-1304, gnl\|bosTau2\|chr10 (55544215-55544805)
	729-1304, gnl\|Hg17\|chr14 (68778978-68779582)
	729-1304, gnl\|Mm7\|chr12 (78461077-78461657)