Ss1.1-Pig4-TMW8046C18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGAGAGGAGCCACTGAATGTGGGCAGTGTGGCTGCTGGTGGGCGCTATGATGGGCTGGT GGGCATGTTTGACCCCAAAGGCCACACGGTGCCATGTGTGGGGCTCAGCATTGGGGTAGA GCGGATCTTCTCCATCGTGGAGCAGAGGATGAAGACTTTTGGTGAGAAGATACGGACCAC AGAGACCCAAGTATTTGTGGCCACACCACAGAAAAACTTTCTCCGGGAACGATTGAAGCT AATTGCAGAGCTTTGGGATGCTGGGATCAAGGCAGAGCTGATGTATAAGAACAACCCAAA ACTACTAACCCAACTGCACTACTCTGAGGACATGGGTATTCCACTGGTGGTCATTATTGG TGAGCAAGAACTGAAGGAAGGGTTCATCAAGCTGCGTTCAGTGGCCAGCAGGGAGGAGGT GGCCATTAAGCGAGAAAATCTTGTGGCTGAAATTCAGAAGCGACTATCTGAGTCTTGATC CTTGCCTGAATGCCACCTGCTGCTCTTTGTAGAAAAGGTTTCATCTAGGACTGAGTTCCT GTTCCACAACTTTACAACTGCTGGCCAGGATGGCTGACTCGTGCCTACGCATCCTCCATC TTTTCTGGGTACAGAATTGTAGGAGGTCCTGAGGACTCTGGGGCTAGTGAGAGCAGCTAT ACTGCATGGGCGCAGATGGCTGGTATGTGACAGAGACATGCTCTAACTGCAGAGGCAGAT GGCAGACTTGCAGTGCCGTTGAACGCTGCCAACATGTGCTAATAAGATGGTTGCTGTGAA CAAGTCTCTGGGAAAGTCACCTCAGGTTGAGACGATTCTGAACCACTGAGATCAGAAGTC ATGTCTTAGCCTTCCACTCTTCGCTTCTGAACCAAATTCTGGGCAGTTTGACCACTGTGT GGTCTTGGCCTGTCCAGGGAGTTTTTGGTAAACAGCAAGAAGGGGCAATGACTGCTCTCT GTTTTGTTTGAGGACAGAGATGCTAGCCCAAGGGCCCAGCAGTGCCCATATTAATATGAC GTCTCTCTAGCCTACCCAGTGTTAATCAGGGTGAGGCCGTCTGTTTAATAATCTTGAATG TTGAATTTAATAGGCGACCTGACAAGATGGAGATCTGATCTTTTGAGACTTTGGAGACCA TTACCTATGCCTGCTCTAACTAGTCCATGTCCTGCCGTGGAGGTGGCTGTTCTAGAAGTG GTTGTATAATATATTAAATAAAATATTAAATCTAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGAGAGGAGCCACTGAATGTGGGCAGTGTGGCTGCTGGTGGGCGCTATGATGGGCTGGT GGGCATGTTTGACCCCAAAGGCCACACGGTGCCATGTGTGGGGCTCAGCATTGGGGTAGA GCGGATCTTCTCCATCGTGGAGCAGAGGATGAAGACTTTTGGTGAGAAGATACGGACCAC AGAGACCCAAGTATTTGTGGCCACACCACAGAAAAACTTTCTCCGGGAACGATTGAAGCT AATTGCAGAGCTTTGGGATGCTGGGATCAAGGCAGAGCTGATGTATAAGAACAACCCAAA ACTACTAACCCAACTGCACTACTCTGAGGACATGGGTATTCCACTGGTGGTCATTATTGG TGAGCAAGAACTGAAGGAAGGGTTCATCAAGCTGCGTTCAGTGGCCAGCAGGGAGGAGGT GGCCATTAAGCGAGAAAATCTTGTGGCTGAAATTCAGAAGCGACTATCTGAGTCTTGATC CTTGCCTGAATGCCACCTGCTGCTCTTTGTAGAAAAGGTTTCATCTAGGACTGAGTTCCT GTTCCACAACTTTACAACTGCTGGCCAGGATGGCTGACTCGTGCCTACGCATCCTCCATC TTTTCTGGGTACAGAATTGTAGGAGGTCCTGAGGACTCTGGGGCTAGTGAGAGCAGCTAT ACTGCATGGGCGCAGATGGCTGGTATGTGACAGAGACATGCTCTAACTGCAGAGGCAGAT GGCAGACTTGCAGTGCCGTTGAACGCTGCCAACATGTGCTAATAAGATGGTTGCTGTGAA CAAGTCTCTGGGAAAGTCACCTCAGGTTGAGACGATTCTGAACCACTGAGATCAGAAGTC ATGTCTTAGCCTTCCACTCTTCGCTTCTGAACCAAATTCTGGGCAGTTTGACCACTGTGT GGTCTTGGCCTGTCCAGGGAGTTTTTGGTAAACAGCAAGAAGGGGCAATGACTGCTCTCT GTTTTGTTTGAGGACAGAGATGCTAGCCCAAGGGCCCAGCAGTGCCCATATTAATATGAC GTCTCTCTAGCCTACCCAGTGTTAATCAGGGTGAGGCCGTCTGTTTAATAATCTTGAATG TTGAATTTAATAGGCGACCTGACAAGATGGAGATCTGATCTTTTGAGACTTTGGAGACCA TTACCTATGCCTGCTCTAACTAGTCCATGTCCTGCCGTGGAGGTGGCTGTTCTAGAAGTG GTTGTATAATATATTAAATAAAATATTAAATCTAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 5-1070, + strand, RNAz p=0.980784 | |
| 642-800, - strand, RNAz p=0.987294 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 5-1070, + strand, RNAz p=0.980784 | |
| 642-800, - strand, RNAz p=0.987294 |
| Aligned organism(s): 22 entry(ies) | More info |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
| 5-154, gnl|bosTau2|chr7 (30462542-30462393) | |
| 5-154, gnl|canFam2|chr2 (38698285-38698613) | |
| 5-154, gnl|danRer3|chr14 (3632833-3632518) | |
| 5-154, gnl|dasNov1|scaffold_23651 (6039-6358) | |
| 5-154, gnl|echTel1|scaffold_292061 (86059-85729) | |
| 5-154, gnl|fr1|chrUn (193329402-193329729) | |
| 5-154, gnl|galGal2|chr13 (243946-244233) | |
| 5-154, gnl|hg17|chr5 (140056886-140057216) | |
| 5-154, gnl|Hg17|chr5 (140057026-140057175) | |
| 5-154, gnl|loxAfr1|scaffold_47616 (5676-6006) | |
| 5-154, gnl|mm7|chr18 (37165532-37165851) | |
| 5-154, gnl|Mm7|chr18 (37165661-37165810) | |
| 5-154, gnl|monDom2|scaffold_6 (68105408-68105098) | |
| 5-154, gnl|oryCun1|scaffold_212741 (41474-41792) | |
| 5-154, gnl|panTro1|chr4 (146675408-146675738) | |
| 5-154, gnl|rheMac2|chr6 (137098458-137098787) | |
| 5-154, gnl|rn3|chr18 (29515175-29515496) | |
| 5-154, gnl|tetNig1|chrUn_random (103419857-103419554) | |
| 5-154, gnl|xenTro1|scaffold_835 (7067-7371) | |
| 417-1231, gnl|bosTau2|chr7 (30461332-30460538) | |
| 417-1231, gnl|Hg17|chr5 (140058260-140059071) | |
| 417-1231, gnl|Mm7|chr18 (37167269-37168251) |
| Aligned organism(s): 22 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-154, gnl|bosTau2|chr7 (30462542-30462393) | |
| 5-154, gnl|canFam2|chr2 (38698285-38698613) | |
| 5-154, gnl|danRer3|chr14 (3632833-3632518) | |
| 5-154, gnl|dasNov1|scaffold_23651 (6039-6358) | |
| 5-154, gnl|echTel1|scaffold_292061 (86059-85729) | |
| 5-154, gnl|fr1|chrUn (193329402-193329729) | |
| 5-154, gnl|galGal2|chr13 (243946-244233) | |
| 5-154, gnl|hg17|chr5 (140056886-140057216) | |
| 5-154, gnl|Hg17|chr5 (140057026-140057175) | |
| 5-154, gnl|loxAfr1|scaffold_47616 (5676-6006) | |
| 5-154, gnl|mm7|chr18 (37165532-37165851) | |
| 5-154, gnl|Mm7|chr18 (37165661-37165810) | |
| 5-154, gnl|monDom2|scaffold_6 (68105408-68105098) | |
| 5-154, gnl|oryCun1|scaffold_212741 (41474-41792) | |
| 5-154, gnl|panTro1|chr4 (146675408-146675738) | |
| 5-154, gnl|rheMac2|chr6 (137098458-137098787) | |
| 5-154, gnl|rn3|chr18 (29515175-29515496) | |
| 5-154, gnl|tetNig1|chrUn_random (103419857-103419554) | |
| 5-154, gnl|xenTro1|scaffold_835 (7067-7371) | |
| 417-1231, gnl|bosTau2|chr7 (30461332-30460538) | |
| 417-1231, gnl|Hg17|chr5 (140058260-140059071) | |
| 417-1231, gnl|Mm7|chr18 (37167269-37168251) |
| Expressed library(ies): 10 entry(ies) | More info |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
| hea (0.204499) | |
| ill (0.175593) | |
| fat (0.147427) | |
| csk (0.140746) | |
| kid (0.129735) | |
| sug (0.127291) | |
| bla (0.124347) | |
| tra (0.123092) | |
| med (0.116252) | |
| nbm (0.0993246) |
| Expressed library(ies): 10 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| hea (0.204499) | |
| ill (0.175593) | |
| fat (0.147427) | |
| csk (0.140746) | |
| kid (0.129735) | |
| sug (0.127291) | |
| bla (0.124347) | |
| tra (0.123092) | |
| med (0.116252) | |
| nbm (0.0993246) |