Non-Coding RNA Search

Ss1.1-Pig4-TMW8046D01.3

Sequence:


               
               GGGCCTTCCTTGGGTGGAAAAGGCGAAGCGAGAGTCCCCTTGGGATCCCCACTCCGCCCC
CAGCCGTGGTCCGGGTCGCCCTTGCACGGCCGAGCCCAATCTGCGAGTTGCTATAGGCAA
CTTGCCCCGCTTCACCTGGGACGTGCTGGTTAGAACACGGACAGCTTTGCAGGCCTCCAT
CCCACTGAAGTGACCCCCATCTGCCTCCCGCCCCGCCACCCAGAGCAGACCTGGGAGGCC
ACAGGAGGCCTCCTGACCGTTCACCCTGCCTTTTTACTATCAGGGTGAAGGCCCCCCACA
CAAGTTTCCCACCAGGCCCCGACATGCCTGTCCTTGTGAGGCAAAAACTTCAATGGGATC
CTTCCTCTCCCTAAAGCCTCGTGGCGGGGCAGCTGGTTCACCCATTCAAACGGAAGGATG
AGATCAGTTCATAGGAACATGATGTGAATGGAAGCAGCCTGTCATTATGCAAATAGTACG
ACACTCTGAACAGACACTAAAAACAGTTCTCATCTCAAAGAACCCAGCGCTGGTGGCACA
GTACGAGAAGTTAGATGCTGGGGAACGGCGTTTGATGAACGAAGCCTTCCTGCCAAACAG
TGATCTCTTTGGACCCATTACTTTGCATTCGAAGTCAGATTGGATAAACTCCCACCCTGA
GGCTCCCCAGGACTTTGAAGAGTTTTTCAATGATCCTTACAGAAAGACACCCTCTGCAGA
GAAGCACAGTATTTATATACAGTGCATTGGATCTCTTGGAAACACAAGGAGTGTCAGTGA
AGAATATGTTAAATGGCTCAAAGGCTACTGTGAAGCATTTTTCTACGGCTTGACAGTGAA
ACTCCTAGAACCAGTTCCTGTCTCTGCCACCAAGTGTTCATTTAGAATCAACGATGACAC
ACAAAACCTACAGATTCATGCAGGGCAGATCCTGAAGTTCTTAAAAAAGAGGAAACCTGA
AGATGCCTTTTGTGTTGTGGGAATAACAATGATTGATCTCTATCCAAGAGACTCCTGGAA
TTTCGTCTTCGGACAGGCCTCTTTGACAGATGGTGTGGGGATATTCAGCTTTGCCAGGTA
TGGCCGTGATTTCTATAGCTCCCACTATGAAGGCAAGGTGAAGAAGCTGCGGAAGAAATC
CTCGAGTGACTATTCAGTTTTTGACAACTATTACATTCCTGAAGTCACTAGTGTTTTGCT
GCTTCGGTCCTGTAAGACTTTAACCCACGAGATTGGGCACATCTTCGGACTTCGGCACTG
CCAGTGGCTTGCCTGCCTCATGCAAGGTTCCAACCACTTGGAAGAAGCTGACCGGCGCCC
CCTCAACCTTTGCCCTGTCTGTTTACGCAAGCTGCAGAGCGCTATTGGCTTCAGCCTTAA
AGAAAGATACCGAGCGCTGGTGAGGTGGATTGACGATGAATCCACCGACACACCTAGAGT
TACTCCGAGACACAGTCGCGAGGATAACGTGAACCTGCCCAAACCTGTGGAAGCCTTTAA
GGAGTGGAAAGAGTGGCTAACCCAGTGCCTTGCTCTTCTCCACACATAAGCACCCTCTCA
TAGGAGTAATTAAAAGAAATAGCTGCACGTTACTCTTGCATTTGGGCGGCGTAGTTCATT
GGAATAAACTGTTGAGTCTGAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCCTTCCTTGGGTGGAAAAGGCGAAGCGAGAGTCCCCTTGGGATCCCCACTCCGCCCC
CAGCCGTGGTCCGGGTCGCCCTTGCACGGCCGAGCCCAATCTGCGAGTTGCTATAGGCAA
CTTGCCCCGCTTCACCTGGGACGTGCTGGTTAGAACACGGACAGCTTTGCAGGCCTCCAT
CCCACTGAAGTGACCCCCATCTGCCTCCCGCCCCGCCACCCAGAGCAGACCTGGGAGGCC
ACAGGAGGCCTCCTGACCGTTCACCCTGCCTTTTTACTATCAGGGTGAAGGCCCCCCACA
CAAGTTTCCCACCAGGCCCCGACATGCCTGTCCTTGTGAGGCAAAAACTTCAATGGGATC
CTTCCTCTCCCTAAAGCCTCGTGGCGGGGCAGCTGGTTCACCCATTCAAACGGAAGGATG
AGATCAGTTCATAGGAACATGATGTGAATGGAAGCAGCCTGTCATTATGCAAATAGTACG
ACACTCTGAACAGACACTAAAAACAGTTCTCATCTCAAAGAACCCAGCGCTGGTGGCACA
GTACGAGAAGTTAGATGCTGGGGAACGGCGTTTGATGAACGAAGCCTTCCTGCCAAACAG
TGATCTCTTTGGACCCATTACTTTGCATTCGAAGTCAGATTGGATAAACTCCCACCCTGA
GGCTCCCCAGGACTTTGAAGAGTTTTTCAATGATCCTTACAGAAAGACACCCTCTGCAGA
GAAGCACAGTATTTATATACAGTGCATTGGATCTCTTGGAAACACAAGGAGTGTCAGTGA
AGAATATGTTAAATGGCTCAAAGGCTACTGTGAAGCATTTTTCTACGGCTTGACAGTGAA
ACTCCTAGAACCAGTTCCTGTCTCTGCCACCAAGTGTTCATTTAGAATCAACGATGACAC
ACAAAACCTACAGATTCATGCAGGGCAGATCCTGAAGTTCTTAAAAAAGAGGAAACCTGA
AGATGCCTTTTGTGTTGTGGGAATAACAATGATTGATCTCTATCCAAGAGACTCCTGGAA
TTTCGTCTTCGGACAGGCCTCTTTGACAGATGGTGTGGGGATATTCAGCTTTGCCAGGTA
TGGCCGTGATTTCTATAGCTCCCACTATGAAGGCAAGGTGAAGAAGCTGCGGAAGAAATC
CTCGAGTGACTATTCAGTTTTTGACAACTATTACATTCCTGAAGTCACTAGTGTTTTGCT
GCTTCGGTCCTGTAAGACTTTAACCCACGAGATTGGGCACATCTTCGGACTTCGGCACTG
CCAGTGGCTTGCCTGCCTCATGCAAGGTTCCAACCACTTGGAAGAAGCTGACCGGCGCCC
CCTCAACCTTTGCCCTGTCTGTTTACGCAAGCTGCAGAGCGCTATTGGCTTCAGCCTTAA
AGAAAGATACCGAGCGCTGGTGAGGTGGATTGACGATGAATCCACCGACACACCTAGAGT
TACTCCGAGACACAGTCGCGAGGATAACGTGAACCTGCCCAAACCTGTGGAAGCCTTTAA
GGAGTGGAAAGAGTGGCTAACCCAGTGCCTTGCTCTTCTCCACACATAAGCACCCTCTCA
TAGGAGTAATTAAAAGAAATAGCTGCACGTTACTCTTGCATTTGGGCGGCGTAGTTCATT
GGAATAAACTGTTGAGTCTGAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55733463|emb|CAH93410.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55733463|emb|CAH93410.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               475-1473, gnl|bosTau2|chr11 (19719900-19720833)
               

               
               475-1473, gnl|Hg17|chr6 (159118236-159117256)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               475-1473, gnl|bosTau2|chr11 (19719900-19720833)
               

               
               475-1473, gnl|Hg17|chr6 (159118236-159117256)

Expressed library(ies): 17 entry(ies)

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Expressed library(ies): 17 entry(ies)

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               cje (0.330469)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               eru (0.240096)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

Expressed library(ies): 17 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cje (0.330469)
               

               
               che (0.272628)
               

               
               fce (0.271592)
               

               
               eru (0.240096)
               

               
               mcp (0.170648)
               

               
               cut (0.169924)
               

               
               cki (0.165235)
               

               
               nca (0.136874)
               

               
               cov (0.132153)
               

               
               ova (0.129132)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               jej (0.0989218)
               

               
               eje (0.0988338)

	475-1473, gnl\|bosTau2\|chr11 (19719900-19720833)
	475-1473, gnl\|Hg17\|chr6 (159118236-159117256)

	cje (0.330469)
	che (0.272628)
	fce (0.271592)
	eru (0.240096)
	mcp (0.170648)
	cut (0.169924)
	cki (0.165235)
	nca (0.136874)
	cov (0.132153)
	ova (0.129132)
	ese (0.126502)
	bla (0.124347)
	clu (0.119646)
	med (0.116252)
	ecc (0.115035)
	jej (0.0989218)
	eje (0.0988338)