Non-Coding RNA Search

Ss1.1-Pig4-TMW8046D06.3

Sequence:


               
               CGCCCGCTTCGGACTCTCGGGGGAGTCTCCTAGGGAGCCGACCGGCGATGCTTAAATAGC
CCTCTGCCCGTTTGGCTCTTTGCAGACGACATTTCTTTCTGCAGAGCCTCGCGTTCTGAC
TTTAGACCCACGAAGAGGAAGTACTTTTGAAGTCAGGGTCTCGATGGGTCCTGAAGTACA
GACACCTCCTCCATGAGCTTCCTGTGCTCTCCAAGGGGACTTCATGAGAATGCTCAGATG
TCTTCCCATTTCACTTGGGCCTGAACTTCAGGGGTAGATGGGTCTTTGAATTTGATGACC
TCTTTGCAGACGACTTTTCTTTCTGCAGAGCCTCGCGTTCTGCCTCTACAGCTCAGCCTC
CCACCACTTTCTGTTCAGCCGTGCACATGGCGGCCTCCAAGGTGGTTATGCTCTCGGTGC
TCAGCCGGGAGCAGGCGGAAGGGGTCGGAGCCCGGGTCCGCAGAAGCATCGGCCGACCTG
AGTTAAAAAACCTGGATCCGTTTTTACTGTTTGATGAATTTAAAGGTGGTAGACCAGGCG
GATTTCCTGATCACCCACACCGAGGCTTTGAAACAGTGTCTTACCTCCTGGAAGGGGGTA
GCATGGCCCACGAAGACTTCTGTGGACATGCTGGTCAGTTGAACCCAGGAGACCTGCAGT
GGATGACCGCCGGCCGGGGCATCGTGCACGCCGAGATGCCCTGCTCGGAGGAGCCAGTCC
ATGGCCTACAACTGTGGGTGAATTTGAGGAGCTCTCAGAAGATGGTGGAGCCACGCTACC
AGGAACTGAAAAGTAAAGAAATCCCTAAACCCAGTCAGGATGGTGTGACCGTGGCCGTCA
TTTCGGGAGAAGCCCTGGGAGTCAAGTCCAAGATTTACACTCACACACCAACCTTATATT
TGGACTTCAAATTGGACCAAGGAGCAAAGCATTCCCAGCCTATTCCTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGCCCGCTTCGGACTCTCGGGGGAGTCTCCTAGGGAGCCGACCGGCGATGCTTAAATAGC
CCTCTGCCCGTTTGGCTCTTTGCAGACGACATTTCTTTCTGCAGAGCCTCGCGTTCTGAC
TTTAGACCCACGAAGAGGAAGTACTTTTGAAGTCAGGGTCTCGATGGGTCCTGAAGTACA
GACACCTCCTCCATGAGCTTCCTGTGCTCTCCAAGGGGACTTCATGAGAATGCTCAGATG
TCTTCCCATTTCACTTGGGCCTGAACTTCAGGGGTAGATGGGTCTTTGAATTTGATGACC
TCTTTGCAGACGACTTTTCTTTCTGCAGAGCCTCGCGTTCTGCCTCTACAGCTCAGCCTC
CCACCACTTTCTGTTCAGCCGTGCACATGGCGGCCTCCAAGGTGGTTATGCTCTCGGTGC
TCAGCCGGGAGCAGGCGGAAGGGGTCGGAGCCCGGGTCCGCAGAAGCATCGGCCGACCTG
AGTTAAAAAACCTGGATCCGTTTTTACTGTTTGATGAATTTAAAGGTGGTAGACCAGGCG
GATTTCCTGATCACCCACACCGAGGCTTTGAAACAGTGTCTTACCTCCTGGAAGGGGGTA
GCATGGCCCACGAAGACTTCTGTGGACATGCTGGTCAGTTGAACCCAGGAGACCTGCAGT
GGATGACCGCCGGCCGGGGCATCGTGCACGCCGAGATGCCCTGCTCGGAGGAGCCAGTCC
ATGGCCTACAACTGTGGGTGAATTTGAGGAGCTCTCAGAAGATGGTGGAGCCACGCTACC
AGGAACTGAAAAGTAAAGAAATCCCTAAACCCAGTCAGGATGGTGTGACCGTGGCCGTCA
TTTCGGGAGAAGCCCTGGGAGTCAAGTCCAAGATTTACACTCACACACCAACCTTATATT
TGGACTTCAAATTGGACCAAGGAGCAAAGCATTCCCAGCCTATTCCTA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26350101|dbj|BAC38690.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26350101|dbj|BAC38690.1|

Aligned organism(s): 1 entry(ies)

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Aligned organism(s): 1 entry(ies)

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               531-948, gnl|bosTau2|chr1 (40109276-40108856)

Aligned organism(s): 1 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               531-948, gnl|bosTau2|chr1 (40109276-40108856)

Expressed library(ies): 6 entry(ies)

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Expressed library(ies): 6 entry(ies)

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               cag (0.151194)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

Expressed library(ies): 6 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cag (0.151194)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               eru (0.120048)
               

               
               cty (0.10408)

	cag (0.151194)
	spl (0.143184)
	hyp (0.142837)
	pla (0.133672)
	eru (0.120048)
	cty (0.10408)