Non-Coding RNA Search

Ss1.1-Pig4-TMW8046D17.5

Sequence:


               
               GCTTTAAGTGTGCTTTGAGATGGTTGTATTCCTAGTTTAATGTTGAGCACAGGTGGTACC
AGCCTGTCTCTGACCCAGGGCGGTAACTCCACATCCAGGTACCACTACCCTTCTGGGCTG
TCCAGATCCTTTTCATGCCCTTTGTTTCCTTGAGCAGAAGCAGATTCAAACCTGAACCAA
TGCACTATCCCTGCTACTTCTTACTTTCCAACCCTAAACCCTCTTAGCCTGGTGTCACAA
CCTAATAAAGGAGGTACTTGCTCCTTTTTACTTTTTATTTTTTGGGCGTGCCAAGGCATG
CAGAAGTTCCCAGGCCAGGAATTGAACCCATGCCACAGCAGCAGCTGGAGCCACAGCATG
TCACAGCAATGTGACATGCCACAACAATGACAGCTGGAGCCACAGCAATCCTCATGCAGG
ATCCTTAACCTGCTGAGTCACCAGGAAATTCCTCTTGCTTCTTTTTAATACTATCATTTT
GTTTTCCAAACCATTAACTTAATTATACTTGATTATTTTATGTCATAGAATTCTCAAAAT
AGGAAGCTGCTTCTCAGGCCAGTAGAGTAAAATACAGAAAAAAGTTGTTAGAATTTAAAT
TTCCTACCATGATAATATGTGAAATACTATTTTTGAGGTCATTGTAGATTGGTCATTCTC
AATGTCTAATCGATTCCCTAAGAATAGTTGAAATCTTTTTTAATTAATTACTATCACCTC
ATGCCTTATCATTCTGCTATACATCAGAAAACAGCTGTTTATTACTCCTTCCCTCTTGGT
TCTCAGTATCACTCATGCCTTGTGAGTTTCCCACTAGGGTTTGATCCCTGGGGCCTCTTA
AGGATGTTTTCCAGGGCTAGGGGTGCAGCTTTCCAAAGAATCAGCTGTTCAGTGTTCACT
TTTTCTAGTGTGTTTCCAGATTCTGGAAGGACATGGATAAGCCATTCTTAATTAATTTTG
AGGAAATGTTATCAGATTTATGTTTTTTAAGCTGCAAACCTTATTTTTTAAAATATGAAA
TATTTAACTTAACCTTTGTCTAACCTGGGCTAATTTGAATTTGCTTAAGATTTGACTATG
AATTAGTAATTACGATTGTCAGGAATTTTATTTTTAAATTTTAAGAAGAAAAGTGACTTT
GGTCAAATTTTACGTTTCTGAAAATTATATCCGAATTTTTTTGTGTAGTATCTACACATG
TTATAAGACAAATAACATCAAATCTGTCTCGAATCCTTGTATATATTTTTGTGTAGCTGT
AACTATTGTGCCATTTTAATCGTCATTATTAATGTGCAAAATGTAAATGAGCATTTGTAC
ATTGTCTCTATAAGAAACTCTGGACAAGTTTTTATCAGTTTTCAAGACTGGATATCAATG
TACATAAAATGGTTAATAAAATATTAGAGTTTTGAAATTATTGAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCTTTAAGTGTGCTTTGAGATGGTTGTATTCCTAGTTTAATGTTGAGCACAGGTGGTACC
AGCCTGTCTCTGACCCAGGGCGGTAACTCCACATCCAGGTACCACTACCCTTCTGGGCTG
TCCAGATCCTTTTCATGCCCTTTGTTTCCTTGAGCAGAAGCAGATTCAAACCTGAACCAA
TGCACTATCCCTGCTACTTCTTACTTTCCAACCCTAAACCCTCTTAGCCTGGTGTCACAA
CCTAATAAAGGAGGTACTTGCTCCTTTTTACTTTTTATTTTTTGGGCGTGCCAAGGCATG
CAGAAGTTCCCAGGCCAGGAATTGAACCCATGCCACAGCAGCAGCTGGAGCCACAGCATG
TCACAGCAATGTGACATGCCACAACAATGACAGCTGGAGCCACAGCAATCCTCATGCAGG
ATCCTTAACCTGCTGAGTCACCAGGAAATTCCTCTTGCTTCTTTTTAATACTATCATTTT
GTTTTCCAAACCATTAACTTAATTATACTTGATTATTTTATGTCATAGAATTCTCAAAAT
AGGAAGCTGCTTCTCAGGCCAGTAGAGTAAAATACAGAAAAAAGTTGTTAGAATTTAAAT
TTCCTACCATGATAATATGTGAAATACTATTTTTGAGGTCATTGTAGATTGGTCATTCTC
AATGTCTAATCGATTCCCTAAGAATAGTTGAAATCTTTTTTAATTAATTACTATCACCTC
ATGCCTTATCATTCTGCTATACATCAGAAAACAGCTGTTTATTACTCCTTCCCTCTTGGT
TCTCAGTATCACTCATGCCTTGTGAGTTTCCCACTAGGGTTTGATCCCTGGGGCCTCTTA
AGGATGTTTTCCAGGGCTAGGGGTGCAGCTTTCCAAAGAATCAGCTGTTCAGTGTTCACT
TTTTCTAGTGTGTTTCCAGATTCTGGAAGGACATGGATAAGCCATTCTTAATTAATTTTG
AGGAAATGTTATCAGATTTATGTTTTTTAAGCTGCAAACCTTATTTTTTAAAATATGAAA
TATTTAACTTAACCTTTGTCTAACCTGGGCTAATTTGAATTTGCTTAAGATTTGACTATG
AATTAGTAATTACGATTGTCAGGAATTTTATTTTTAAATTTTAAGAAGAAAAGTGACTTT
GGTCAAATTTTACGTTTCTGAAAATTATATCCGAATTTTTTTGTGTAGTATCTACACATG
TTATAAGACAAATAACATCAAATCTGTCTCGAATCCTTGTATATATTTTTGTGTAGCTGT
AACTATTGTGCCATTTTAATCGTCATTATTAATGTGCAAAATGTAAATGAGCATTTGTAC
ATTGTCTCTATAAGAAACTCTGGACAAGTTTTTATCAGTTTTCAAGACTGGATATCAATG
TACATAAAATGGTTAATAAAATATTAGAGTTTTGAAATTATTGAAAAA

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

Help | Less info


               
               58-270, gnl|bosTau2|chr18 (46993963-46994172)
               

               
               58-270, gnl|Hg17|chr20 (35059815-35059604)
               


               
               454-690, gnl|bosTau2|chr18 (46994159-46994414)
               

               
               454-690, gnl|Hg17|chr20 (35059617-35059370)
               


               
               805-1246, gnl|bosTau2|chr18 (46995624-46996060)
               

               
               805-1246, gnl|Hg17|chr20 (35059041-35058644)
               

               
               805-1246, gnl|Mm7|chr2 (156887400-156886954)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               58-270, gnl|bosTau2|chr18 (46993963-46994172)
               

               
               58-270, gnl|Hg17|chr20 (35059815-35059604)
               


               
               454-690, gnl|bosTau2|chr18 (46994159-46994414)
               

               
               454-690, gnl|Hg17|chr20 (35059617-35059370)
               


               
               805-1246, gnl|bosTau2|chr18 (46995624-46996060)
               

               
               805-1246, gnl|Hg17|chr20 (35059041-35058644)
               

               
               805-1246, gnl|Mm7|chr2 (156887400-156886954)

Expressed library(ies): 15 entry(ies)

More info

Expressed library(ies): 15 entry(ies)

Help | Less info


               
               spl (0.429553)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               ste (0.270416)
               

               
               cmu (0.186393)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

Expressed library(ies): 15 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spl (0.429553)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               sme (0.305437)
               

               
               lin (0.291206)
               

               
               ste (0.270416)
               

               
               cmu (0.186393)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               liv (0.146284)
               

               
               ova (0.129132)
               

               
               sug (0.127291)
               

               
               tra (0.123092)
               

               
               eje (0.0988338)
               

               
               ldo (0.0970026)

	58-270, gnl\|bosTau2\|chr18 (46993963-46994172)
	58-270, gnl\|Hg17\|chr20 (35059815-35059604)

	454-690, gnl\|bosTau2\|chr18 (46994159-46994414)
	454-690, gnl\|Hg17\|chr20 (35059617-35059370)

	805-1246, gnl\|bosTau2\|chr18 (46995624-46996060)
	805-1246, gnl\|Hg17\|chr20 (35059041-35058644)
	805-1246, gnl\|Mm7\|chr2 (156887400-156886954)

	spl (0.429553)
	vin (0.332557)
	fco (0.314416)
	sme (0.305437)
	lin (0.291206)
	ste (0.270416)
	cmu (0.186393)
	isp (0.150376)
	bfe (0.149858)
	liv (0.146284)
	ova (0.129132)
	sug (0.127291)
	tra (0.123092)
	eje (0.0988338)
	ldo (0.0970026)