Non-Coding RNA Search

Ss1.1-Pig4-TMW8046D21.3

Sequence:


               
               CCTTTTGTAACATGTTAGGAGTTATTGTTGCGAAGAGTAGTTTACATCTTCACTTTCTGA
AGACACTTGAATTTAGGACCGATGTATCTGTGACAAGCATGCCAGGAGTAGCAAGGGCCA
TCAGGGCTTGCCACTTCATACCCACCATCTTCCATGGGGAATCCAAGATCTGAGCAACAA
AGCAACAGCCTGCCTAAATCCTTCTGTTCATCCCGTGCCCTCCCAAGATGGGTCCATGCC
AACACCACTTTTGAGCATCAAACATCACAAGGTCTGTACACCTCAGCCGTGCAGAGGGGC
AGGTTTCTCTCACTTGCTCCTAAATCCAGGAGTAAATGCACTACCATGTAGAGAAGGGCT
GCCCCAGCCTGCACCCCCTTGGGCTCAGATCGAGGTGTGAAGCCCCCATGTCAAAGTTAA
GTTTTTGTTTAGTTTTATTGTAGCTCTTGTTTTCCCTTTCCTGATAACTGATTTAACAAA
AGAAAGCTGCTCAAAAAGTCCTGGCAGTGGGGAGGAGGGGCAAGGAGGAAACAGCTAGCT
GGTGGGGGCGGGTGTTGGGGGCTGGTTGACAGCCTGGGTAGAGTGGTCTGGATCATCTGG
TGCCCTCCCAAGTGGGACCCCGGAGTAGCTCCTGTGTGGAGGGGTCCCTGGGTTTGCCCC
AGCCCCACTCTCTCCTTGAGCCGTGTCGACAGCAGAGGCAGAGAAGATGAGGATGCACAG
CCCATTTCTGACTGGAGAGGAAAGCTTGTCATCTGGCTTTGCGGAGAAGGTTCCACTTAT
GCTCATAGTCCATTATCTTTACCGTGCTAGGATATCCCATTTAAAAGGACAAAAACAATG
TAAAATACTTGAATGAGCTTGTATTATAACATTAATATTATTGAGAGTATCTGCTTTCCA
GGCTGAAGTGATTCATTCATTATTCTAGTCCTGCTTTAGTCCTTTGTAATTTGTGGTAAT
TATGCTTTTCTTTTTAATACAAAAAAAATGTATAAAAATAAAAACTTGAAAAGGCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTTTGTAACATGTTAGGAGTTATTGTTGCGAAGAGTAGTTTACATCTTCACTTTCTGA
AGACACTTGAATTTAGGACCGATGTATCTGTGACAAGCATGCCAGGAGTAGCAAGGGCCA
TCAGGGCTTGCCACTTCATACCCACCATCTTCCATGGGGAATCCAAGATCTGAGCAACAA
AGCAACAGCCTGCCTAAATCCTTCTGTTCATCCCGTGCCCTCCCAAGATGGGTCCATGCC
AACACCACTTTTGAGCATCAAACATCACAAGGTCTGTACACCTCAGCCGTGCAGAGGGGC
AGGTTTCTCTCACTTGCTCCTAAATCCAGGAGTAAATGCACTACCATGTAGAGAAGGGCT
GCCCCAGCCTGCACCCCCTTGGGCTCAGATCGAGGTGTGAAGCCCCCATGTCAAAGTTAA
GTTTTTGTTTAGTTTTATTGTAGCTCTTGTTTTCCCTTTCCTGATAACTGATTTAACAAA
AGAAAGCTGCTCAAAAAGTCCTGGCAGTGGGGAGGAGGGGCAAGGAGGAAACAGCTAGCT
GGTGGGGGCGGGTGTTGGGGGCTGGTTGACAGCCTGGGTAGAGTGGTCTGGATCATCTGG
TGCCCTCCCAAGTGGGACCCCGGAGTAGCTCCTGTGTGGAGGGGTCCCTGGGTTTGCCCC
AGCCCCACTCTCTCCTTGAGCCGTGTCGACAGCAGAGGCAGAGAAGATGAGGATGCACAG
CCCATTTCTGACTGGAGAGGAAAGCTTGTCATCTGGCTTTGCGGAGAAGGTTCCACTTAT
GCTCATAGTCCATTATCTTTACCGTGCTAGGATATCCCATTTAAAAGGACAAAAACAATG
TAAAATACTTGAATGAGCTTGTATTATAACATTAATATTATTGAGAGTATCTGCTTTCCA
GGCTGAAGTGATTCATTCATTATTCTAGTCCTGCTTTAGTCCTTTGTAATTTGTGGTAAT
TATGCTTTTCTTTTTAATACAAAAAAAATGTATAAAAATAAAAACTTGAAAAGGCAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

More info

Predicted RNA structure(s): 3 entry(ies)

Help | Less info


               
               189-308, - strand, RNAz p=0.884881
               

               
               346-450, - strand, RNAz p=0.936661
               

               
               553-747, - strand, RNAz p=0.999407

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               189-308, - strand, RNAz p=0.884881
               

               
               346-450, - strand, RNAz p=0.936661
               

               
               553-747, - strand, RNAz p=0.999407

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-1024, gnl|bosTau2|chr7 (44730772-44731786)
               

               
               3-1024, gnl|Hg17|chr5 (154176303-154177360)
               

               
               3-1024, gnl|Mm7|chr11 (58142655-58143581)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-1024, gnl|bosTau2|chr7 (44730772-44731786)
               

               
               3-1024, gnl|Hg17|chr5 (154176303-154177360)
               

               
               3-1024, gnl|Mm7|chr11 (58142655-58143581)

Expressed library(ies): 22 entry(ies)

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Expressed library(ies): 22 entry(ies)

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               lnt (0.569233)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 22 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               lnt (0.569233)
               

               
               hlv (0.278513)
               

               
               fce (0.271592)
               

               
               jca (0.22792)
               

               
               fcc (0.197785)
               

               
               col (0.195008)
               

               
               cmu (0.186393)
               

               
               nep (0.183925)
               

               
               sag (0.182715)
               

               
               mcp (0.170648)
               

               
               liv (0.146284)
               

               
               nca (0.136874)
               

               
               che (0.136314)
               

               
               sug (0.127291)
               

               
               ese (0.126502)
               

               
               bla (0.124347)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               med (0.116252)
               

               
               ecc (0.115035)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	189-308, - strand, RNAz p=0.884881
	346-450, - strand, RNAz p=0.936661
	553-747, - strand, RNAz p=0.999407

	3-1024, gnl\|bosTau2\|chr7 (44730772-44731786)
	3-1024, gnl\|Hg17\|chr5 (154176303-154177360)
	3-1024, gnl\|Mm7\|chr11 (58142655-58143581)

	lnt (0.569233)
	hlv (0.278513)
	fce (0.271592)
	jca (0.22792)
	fcc (0.197785)
	col (0.195008)
	cmu (0.186393)
	nep (0.183925)
	sag (0.182715)
	mcp (0.170648)
	liv (0.146284)
	nca (0.136874)
	che (0.136314)
	sug (0.127291)
	ese (0.126502)
	bla (0.124347)
	cly (0.120642)
	eru (0.120048)
	med (0.116252)
	ecc (0.115035)
	spc (0.113366)
	cty (0.10408)