Non-Coding RNA Search

Ss1.1-Pig4-TMW8046E02.3

Sequence:


               
               GAAAGAGACCAGGCGAGGTGCTCGCGTGGTCGCCCTTGTGCATTTCGGGAGGTGGCACGG
TTGACAGCCCTGGCCAAGACTTCTCAGTTCTGCCACTTTCTAGCTGTGTGGCCTTGAATA
CTTACCGTCTTGGAGCGTCTGTCGTCTGAGCTGTTCTGGGGATTGAATGAGGTGCTGGCA
CGGACAACCATTCCGAGGTCAGGTGGTCACCTTTTTGCTGTCCTGTGGTGTGTTCTGACT
GCCTGGGCCTCTGCAGGAAGCACGGGCCAGGGCCTGGGTGTCGGCCTGGGTGTCCGGGCC
GCCTGAGCAGTGTGGCTGTTGGCCTCTGCCCCTCCTCCTCTGGTAACTTCAGCCTAGTGG
AACGTAGAGAAGGCTCGTGGGGAAAACGAGGGTCGGCGCCTGCGTGGTGGTCCCCTCCTG
GGACCGTCCCCTTCTGCTCACCTCCCTTCTTCCCCCAGGTGAGGAAGTTCCGAACGTTGA
CAGAGTTGATCCTCGATGCTCAGGAACATGTTAAAAATCCCTACAAAGGCAAAAAACTCA
AGAAACATCCGGACTTTCCAAAGAAGCCCCTGACCCCTTATTTCCGCTTCTTCATGGAGA
AGCGGGCCAAGTACGCAAAACTCCACCCTGAGATGAGCAACCTGGACCTGACCAAGATTC
TGTCCAAGAAATACAAGGAGCTGCCCGAGAAGAAGAAGATGAAGTATATTCAGGACTTCC
AGAGAGAGAAAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAGAGACCAGGCGAGGTGCTCGCGTGGTCGCCCTTGTGCATTTCGGGAGGTGGCACGG
TTGACAGCCCTGGCCAAGACTTCTCAGTTCTGCCACTTTCTAGCTGTGTGGCCTTGAATA
CTTACCGTCTTGGAGCGTCTGTCGTCTGAGCTGTTCTGGGGATTGAATGAGGTGCTGGCA
CGGACAACCATTCCGAGGTCAGGTGGTCACCTTTTTGCTGTCCTGTGGTGTGTTCTGACT
GCCTGGGCCTCTGCAGGAAGCACGGGCCAGGGCCTGGGTGTCGGCCTGGGTGTCCGGGCC
GCCTGAGCAGTGTGGCTGTTGGCCTCTGCCCCTCCTCCTCTGGTAACTTCAGCCTAGTGG
AACGTAGAGAAGGCTCGTGGGGAAAACGAGGGTCGGCGCCTGCGTGGTGGTCCCCTCCTG
GGACCGTCCCCTTCTGCTCACCTCCCTTCTTCCCCCAGGTGAGGAAGTTCCGAACGTTGA
CAGAGTTGATCCTCGATGCTCAGGAACATGTTAAAAATCCCTACAAAGGCAAAAAACTCA
AGAAACATCCGGACTTTCCAAAGAAGCCCCTGACCCCTTATTTCCGCTTCTTCATGGAGA
AGCGGGCCAAGTACGCAAAACTCCACCCTGAGATGAGCAACCTGGACCTGACCAAGATTC
TGTCCAAGAAATACAAGGAGCTGCCCGAGAAGAAGAAGATGAAGTATATTCAGGACTTCC
AGAGAGAGAAAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|17942547|pdb|1K99|A

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17942547|pdb|1K99|A

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-542, gnl|bosTau2|chr19 (38080012-38080537)
               

               
               1-542, gnl|Hg17|chr17 (39649339-39648800)
               

               
               1-542, gnl|Mm7|chr11 (102423667-102423178)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-542, gnl|bosTau2|chr19 (38080012-38080537)
               

               
               1-542, gnl|Hg17|chr17 (39649339-39648800)
               

               
               1-542, gnl|Mm7|chr11 (102423667-102423178)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cty (0.10408)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	1-542, gnl\|bosTau2\|chr19 (38080012-38080537)
	1-542, gnl\|Hg17\|chr17 (39649339-39648800)
	1-542, gnl\|Mm7\|chr11 (102423667-102423178)