Ss1.1-Pig4-TMW8046E05.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ATTTTGGTGGCCGGGCGCGGAGGTGATTCCACACTGAGGAGAGCGCGGCGGCCGGAGTGG CAGTGGCAGCGTTCGTGTGCTCTGGTGTGAATCGCCGAGGGAGGAGGCGGTGGAGGAAGA GGTGGCGGCGGTGGCGGTGGTCGTAGCGGTGGCGGAGGAGGCGGGTACGAATCAGCTGCG GGCGGAGACATGGCCAACATCGCGGTGCAGCGAATCAAGCGGGAGTTCAAGGAGGTGCTG AAGAGCGAGGAGACGAGCAAAAATCAAATTAAAGTAGATCTTGTAGATGAGAATTTTACA GAATTAAGAGGAGAAATAGCAGGACCTCCAGACACACCATATGAAGGAGGAAGATATCAA CTAGAGATTAAAATACCAGAAACATATCCATTTAATCCCCCTAAGGTCCGGTTTATCACA AAAATATGGCATCCTAATATTAGTTCCGTCACAGGGGCTATTTGTTTGGATATCCTGAAA GATCAATGGGCAGCAGCAATGACTCTGCGCACAGTATTATTGTCATTGCAAGCACTACTG GCAGCTGCAGAACCAGATGATCCACAAGATGCAGTAGTAGCGAATCAGTACAAACAAAAT CCTGAAATGTTCAAACAAACAGCTCGACTTTGGGCACATGTGTATGCTGGAGCACCAGTT TCTAGTCCAGAATACACCAAAAAAATAGAAAACTTATGTGCTATGGGCTTTGATAGGAAT GCGGTAATAGTGGCCTTGTCTTCAAAATCATGGGATGTAGAGACTGCAACAGAATTGCTT CTGAGTAACTGAGACATAGAGCTGCTGATATAGTCAAGCTTGCCCCTTCTTGAGGAGCAT CAACATCTGTTATTTTTAGGATTCTGCATAGATATCTTTTAAACTGGCATTCTTGCCTAA TGATGTTATCTAGGCACCATTGGAGACTGAAAAAAAAAATTTCATGCTCTGTAAATAAAG CTAATTAAACGTCTGTGTAAATTTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ATTTTGGTGGCCGGGCGCGGAGGTGATTCCACACTGAGGAGAGCGCGGCGGCCGGAGTGG CAGTGGCAGCGTTCGTGTGCTCTGGTGTGAATCGCCGAGGGAGGAGGCGGTGGAGGAAGA GGTGGCGGCGGTGGCGGTGGTCGTAGCGGTGGCGGAGGAGGCGGGTACGAATCAGCTGCG GGCGGAGACATGGCCAACATCGCGGTGCAGCGAATCAAGCGGGAGTTCAAGGAGGTGCTG AAGAGCGAGGAGACGAGCAAAAATCAAATTAAAGTAGATCTTGTAGATGAGAATTTTACA GAATTAAGAGGAGAAATAGCAGGACCTCCAGACACACCATATGAAGGAGGAAGATATCAA CTAGAGATTAAAATACCAGAAACATATCCATTTAATCCCCCTAAGGTCCGGTTTATCACA AAAATATGGCATCCTAATATTAGTTCCGTCACAGGGGCTATTTGTTTGGATATCCTGAAA GATCAATGGGCAGCAGCAATGACTCTGCGCACAGTATTATTGTCATTGCAAGCACTACTG GCAGCTGCAGAACCAGATGATCCACAAGATGCAGTAGTAGCGAATCAGTACAAACAAAAT CCTGAAATGTTCAAACAAACAGCTCGACTTTGGGCACATGTGTATGCTGGAGCACCAGTT TCTAGTCCAGAATACACCAAAAAAATAGAAAACTTATGTGCTATGGGCTTTGATAGGAAT GCGGTAATAGTGGCCTTGTCTTCAAAATCATGGGATGTAGAGACTGCAACAGAATTGCTT CTGAGTAACTGAGACATAGAGCTGCTGATATAGTCAAGCTTGCCCCTTCTTGAGGAGCAT CAACATCTGTTATTTTTAGGATTCTGCATAGATATCTTTTAAACTGGCATTCTTGCCTAA TGATGTTATCTAGGCACCATTGGAGACTGAAAAAAAAAATTTCATGCTCTGTAAATAAAG CTAATTAAACGTCTGTGTAAATTTAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | More info |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
| 1-252, gnl|bosTau2|chr18 (36810184-36809933) | |
| 1-252, gnl|Hg17|chr4 (39522325-39522576) | |
| 1-252, gnl|Mm7|chr5 (64892102-64892357) | |
| 488-588, gnl|bosTau2|chrX (41491849-41491949) | |
| 488-588, gnl|canFam2|chr3 (75547742-75547635) | |
| 488-588, gnl|danRer3|chr1 (21365577-21365471) | |
| 488-588, gnl|dasNov1|scaffold_60831 (143-250) | |
| 488-588, gnl|echTel1|scaffold_282565 (47784-47885) | |
| 488-588, gnl|fr1|chrUn (234020736-234020843) | |
| 488-588, gnl|galGal2|chr4 (69631912-69631805) | |
| 488-588, gnl|hg17|chr4 (39599016-39599123) | |
| 488-588, gnl|Hg17|chr4 (39599019-39599119) | |
| 488-588, gnl|loxAfr1|scaffold_10708 (18670-18563) | |
| 488-588, gnl|mm7|chr5 (64946683-64946790) | |
| 488-588, gnl|Mm7|chr5 (64946686-64946786) | |
| 488-588, gnl|monDom2|scaffold_26 (4864393-4864500) | |
| 488-588, gnl|oryCun1|scaffold_181432 (101903-101796) | |
| 488-588, gnl|panTro1|chr3 (42295393-42295500) | |
| 488-588, gnl|rheMac2|chr5 (34778210-34778317) | |
| 488-588, gnl|rn3|chr14 (45358738-45358631) | |
| 488-588, gnl|tetNig1|chr1 (301957-301850) | |
| 642-894, gnl|bosTau2|chr18 (51027164-51026910) | |
| 642-894, gnl|Hg17|chr1 (174717987-174718236) | |
| 642-894, gnl|Mm7|chr1 (157442159-157441918) |
| Aligned organism(s): 24 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-252, gnl|bosTau2|chr18 (36810184-36809933) | |
| 1-252, gnl|Hg17|chr4 (39522325-39522576) | |
| 1-252, gnl|Mm7|chr5 (64892102-64892357) | |
| 488-588, gnl|bosTau2|chrX (41491849-41491949) | |
| 488-588, gnl|canFam2|chr3 (75547742-75547635) | |
| 488-588, gnl|danRer3|chr1 (21365577-21365471) | |
| 488-588, gnl|dasNov1|scaffold_60831 (143-250) | |
| 488-588, gnl|echTel1|scaffold_282565 (47784-47885) | |
| 488-588, gnl|fr1|chrUn (234020736-234020843) | |
| 488-588, gnl|galGal2|chr4 (69631912-69631805) | |
| 488-588, gnl|hg17|chr4 (39599016-39599123) | |
| 488-588, gnl|Hg17|chr4 (39599019-39599119) | |
| 488-588, gnl|loxAfr1|scaffold_10708 (18670-18563) | |
| 488-588, gnl|mm7|chr5 (64946683-64946790) | |
| 488-588, gnl|Mm7|chr5 (64946686-64946786) | |
| 488-588, gnl|monDom2|scaffold_26 (4864393-4864500) | |
| 488-588, gnl|oryCun1|scaffold_181432 (101903-101796) | |
| 488-588, gnl|panTro1|chr3 (42295393-42295500) | |
| 488-588, gnl|rheMac2|chr5 (34778210-34778317) | |
| 488-588, gnl|rn3|chr14 (45358738-45358631) | |
| 488-588, gnl|tetNig1|chr1 (301957-301850) | |
| 642-894, gnl|bosTau2|chr18 (51027164-51026910) | |
| 642-894, gnl|Hg17|chr1 (174717987-174718236) | |
| 642-894, gnl|Mm7|chr1 (157442159-157441918) |
| Expressed library(ies): 24 entry(ies) | More info |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
| tbr (0.308356) | |
| ski (0.29347) | |
| pan (0.23596) | |
| hea (0.204499) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| rec (0.17307) | |
| cki (0.165235) | |
| eli (0.151814) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| lin (0.145603) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| ova (0.129132) | |
| bla (0.124347) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| spc (0.113366) |
| Expressed library(ies): 24 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.308356) | |
| ski (0.29347) | |
| pan (0.23596) | |
| hea (0.204499) | |
| ldo (0.194005) | |
| nlu (0.191681) | |
| cmu (0.186393) | |
| mgm (0.180343) | |
| rec (0.17307) | |
| cki (0.165235) | |
| eli (0.151814) | |
| isp (0.150376) | |
| bfe (0.149858) | |
| liv (0.146284) | |
| lin (0.145603) | |
| csk (0.140746) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| ova (0.129132) | |
| bla (0.124347) | |
| eru (0.120048) | |
| pgl (0.118483) | |
| spc (0.113366) |