Non-Coding RNA Search

Ss1.1-Pig4-TMW8046E10.3

Sequence:


               
               TGTATGTTACAAACTCTACGGTGAAGGAATATTACATACATGAAAGTTACAAATCCTAAA
CTCTGTGGTATCTTTCTAGGGAATGGAGAAAGGCAGTGAAAAGGCAGCTGGACTAAAGGA
GGCTTGAAGGATTCAAGTATAAATAATATTTTATATAAGACATATAGCTGTTTAGGTTTC
CTTAATCTTTGAGAATAGTCACAAATATCATAAAGCAAAGTTCATTGTTTTAGGATTTTT
TAAAAATGTGTTGTACCTAAGGCCATACTTAACTCTTCTATGCTATCACTGCAAAGGAGT
GATATGTATGTATTATATGAAAAAAAAAAATCCTTAATGCACTGTTATCTCCTAAATATT
TAGTAAATTAATACTATTTAATTTTTTTAAAGATTTGTCTGTGTAGACACTAAAAGTATT
ACACAAAATCTGGACTGAAGATGTCCTTTTTAACAACAATTTAAAGTACTTTTTATATAT
GTTATGTAGTATATCCTTTCTACACTGCCTAGTTTGTATTTCCCATAATTCCCGTGTGTG
AAGTGTGCCTGTCCTTGTCTCTTTTTTCAGTCATTTTCTGCACGCATCCCTCTTTATACG
ATTATAGACATGACTGTATGCTTTTCACACACTGCCGCGAGGTGTGTGCTCAGAGCTGGC
TGCCCCCCAGCGAGGCCCGCTCCCAGGGGTGTGGAATGAGCCGCCGCTTTGAAGCCAAGC
GTTTCCTGCTTTTGAGTTGTCCTGACATCTTTCTTGAAATGACTGTTAAAACAAAAATAA
ATTACATTGCATTTATTTTATATTCTTGGTTGTAATAAAATTTAATTGACTTTGAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTATGTTACAAACTCTACGGTGAAGGAATATTACATACATGAAAGTTACAAATCCTAAA
CTCTGTGGTATCTTTCTAGGGAATGGAGAAAGGCAGTGAAAAGGCAGCTGGACTAAAGGA
GGCTTGAAGGATTCAAGTATAAATAATATTTTATATAAGACATATAGCTGTTTAGGTTTC
CTTAATCTTTGAGAATAGTCACAAATATCATAAAGCAAAGTTCATTGTTTTAGGATTTTT
TAAAAATGTGTTGTACCTAAGGCCATACTTAACTCTTCTATGCTATCACTGCAAAGGAGT
GATATGTATGTATTATATGAAAAAAAAAAATCCTTAATGCACTGTTATCTCCTAAATATT
TAGTAAATTAATACTATTTAATTTTTTTAAAGATTTGTCTGTGTAGACACTAAAAGTATT
ACACAAAATCTGGACTGAAGATGTCCTTTTTAACAACAATTTAAAGTACTTTTTATATAT
GTTATGTAGTATATCCTTTCTACACTGCCTAGTTTGTATTTCCCATAATTCCCGTGTGTG
AAGTGTGCCTGTCCTTGTCTCTTTTTTCAGTCATTTTCTGCACGCATCCCTCTTTATACG
ATTATAGACATGACTGTATGCTTTTCACACACTGCCGCGAGGTGTGTGCTCAGAGCTGGC
TGCCCCCCAGCGAGGCCCGCTCCCAGGGGTGTGGAATGAGCCGCCGCTTTGAAGCCAAGC
GTTTCCTGCTTTTGAGTTGTCCTGACATCTTTCTTGAAATGACTGTTAAAACAAAAATAA
ATTACATTGCATTTATTTTATATTCTTGGTTGTAATAAAATTTAATTGACTTTGAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-834, gnl|bosTau2|chr9 (20894863-20895677)
               

               
               1-834, gnl|Hg17|chr6 (111038696-111037874)
               

               
               1-834, gnl|Mm7|chr10 (40270240-40270994)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-834, gnl|bosTau2|chr9 (20894863-20895677)
               

               
               1-834, gnl|Hg17|chr6 (111038696-111037874)
               

               
               1-834, gnl|Mm7|chr10 (40270240-40270994)

Expressed library(ies): 14 entry(ies)

More info

Expressed library(ies): 14 entry(ies)

Help | Less info


               
               gul (0.355177)
               

               
               cje (0.330469)
               

               
               cte (0.29274)
               

               
               thg (0.253582)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               gul (0.355177)
               

               
               cje (0.330469)
               

               
               cte (0.29274)
               

               
               thg (0.253582)
               

               
               hea (0.204499)
               

               
               fcc (0.197785)
               

               
               sto (0.179824)
               

               
               fco (0.157208)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               che (0.136314)
               

               
               lyg (0.133103)
               

               
               ova (0.129132)

	1-834, gnl\|bosTau2\|chr9 (20894863-20895677)
	1-834, gnl\|Hg17\|chr6 (111038696-111037874)
	1-834, gnl\|Mm7\|chr10 (40270240-40270994)

	gul (0.355177)
	cje (0.330469)
	cte (0.29274)
	thg (0.253582)
	hea (0.204499)
	fcc (0.197785)
	sto (0.179824)
	fco (0.157208)
	bfe (0.149858)
	ski (0.146735)
	spl (0.143184)
	che (0.136314)
	lyg (0.133103)
	ova (0.129132)