Non-Coding RNA Search

Ss1.1-Pig4-TMW8046E16.3.5

Sequence:


               
               CGACGCGGCGGTCAATGGCCCCGTATGATGAGCGGGCTCTGCTGCTGCCGACTGAGGACT
GCAGGCGCCACCGTTGAGGGCTCAGGGGCTTCCTCTGGAGCCCGCCGAGCCACCACTGCT
GCACTCACTCTGCAAGGGATCAGGACCAGCAATCTTTATATTCGAGATTCTAAGACATTG
TACAGAGAAACTCAGAAGTGTACAAATATTGCACATTGACAAATACCAAGAATTTCTGCG
TATGTTTATATTGTATTGTTCTAAATAATGGGCCGCCTGTGAAGTCAGATCTTGCCACCC
GTGTAATGATAGCAGTACTGCTAGGGCTCAGACGGCTGTAAGAATAGTTTTATAAAAGTG
AAGACACAGATCTATTGTATTTGAAACATAACTATCTGACAATTATTAGTGTGACCAAAG
TTTTAGGCAGTTTTCATACATTTTTCACCTTGTACAAAATTCTGAATTCATTTTTCTTCC
AAGTTGGCAAAGAGTTCTAGGATCGAAATGCCCTCTAAGTGTTATTTTGGTTGTTCTAAC
TTACAAAAGTGATTTTGAATAAGAAATATTTGGTGTTCTTTTTATAACCAGTTTTTGATT
GGTAACTGTTTTCTGTATTGTTTAAAACGGATCAAAAAAAAATGTAAGTCTATTAGTAGA
GATTAAGTATTTATTGCTACACCTTAGTTGACGAATCGGTGTTCTTGTAAAGCCATATGT
TCTGTTCAAGTCTCGTTTGCTTGACATGATCATACCTGCAGGTGAAACACTAGACTATTT
GGAGTGTACATGGCTTGTGGTTTGGGGGTTTTTTGTTGTTGCTGTTTTCCGGTTTTGTTT
TTTTGTTTTGTTTTGGTTGTTCATCTGCCTTTTAACCCATTCACCGAAATTTTCCTTGTT
AACAAGCATCCCCAATGAACATTTCAGAGCAATCTGCGTATTTAACGTACCTAAACCATC
TTAGGCAAGTCAGTTGAAAAATGCTCGTGCTGCTAATGGAATTAGAGTGCGTTCATTTTC
CAGGCTAGTATTTTAAACTAGACGTCAGAACCCGGCACCTGAGCATGTTGATTGTTTGCT
GTACCTGGTGAGGTTTTCCCTCGTAAATTCTAAACCAGTGTATTTTTTTTTTTTTTTAGA
ACTGGTTTGTGTACATATATAGTGATTATGGATACTAATTCAATGTAATTTATAATTTTC
TATGTCAATATAAAAATACGTCACAGCCTTCTCAAACAGCTGAAGCAATATATTGTATAT
TGCCGTATCGTCTGGTGAAAGGGTTAAATTACTTCACCTCTTGCACTTTTAGATGCAAAT
CAGTTTTTCATTTCTGTAATAGAAAATTAATTCACGTATTTTTACATCATTTGTTTTTCC
TGACCAGTATTTAAAACCAAAAGGATATTCTGAAAAATGGCCAACAATTTTTTTAGAAAT
AGGATCCCAAGCAGCGTGCCTAAACATGACATTGCATATGGAAATAAAAGATCAAATGTC
TAATGCCTTATTTCTTACTTCCTGTCCCACGGTGAGGGGCGTAGAAACCCTCCGAGGGTC
CCCGAGGCAGAGCCAGCCCTCGAGGACCGCAGCCCGCCGCGCCCCGGGACGGACGGCCTG
GGGCGCCCGCTCAGGAATCCTTTCCGTCACGAGCTCCTCTCAGAAGACGGCCCTCGCGCC
CTCTCCCTGGACCCTGGCGCCGCCGGAGGACAGGGACCGCACCCGGCCCGGGACGGCGGC
GGCGGCCGGGGCGCTGCGGCCCCTCGCTCTGGGGTTGGTTGGCTCCTCGGCCCCGCCCAA
GGTAAACCCGCTGTCCCACTTCGTCCCCACCCCCGGCCGCTGACGGGCACGTGGGGTGCG
CCTGGGGGTAGGGGTGTGTGTCCGGGCGAGGACGCAGGGACGGGGCGGGGAGGAGGGCCG
GCCCAGGGCGCGGGGTGCTCTGTGAGGTCCTGCTTGAACTTGTGTGGGTTGGCCAGGCCG
AGTGCGAGGACGGATGTGTACCTGTGTTAAAAGTGACGACCACAACAATAAAGCCTGATT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGACGCGGCGGTCAATGGCCCCGTATGATGAGCGGGCTCTGCTGCTGCCGACTGAGGACT
GCAGGCGCCACCGTTGAGGGCTCAGGGGCTTCCTCTGGAGCCCGCCGAGCCACCACTGCT
GCACTCACTCTGCAAGGGATCAGGACCAGCAATCTTTATATTCGAGATTCTAAGACATTG
TACAGAGAAACTCAGAAGTGTACAAATATTGCACATTGACAAATACCAAGAATTTCTGCG
TATGTTTATATTGTATTGTTCTAAATAATGGGCCGCCTGTGAAGTCAGATCTTGCCACCC
GTGTAATGATAGCAGTACTGCTAGGGCTCAGACGGCTGTAAGAATAGTTTTATAAAAGTG
AAGACACAGATCTATTGTATTTGAAACATAACTATCTGACAATTATTAGTGTGACCAAAG
TTTTAGGCAGTTTTCATACATTTTTCACCTTGTACAAAATTCTGAATTCATTTTTCTTCC
AAGTTGGCAAAGAGTTCTAGGATCGAAATGCCCTCTAAGTGTTATTTTGGTTGTTCTAAC
TTACAAAAGTGATTTTGAATAAGAAATATTTGGTGTTCTTTTTATAACCAGTTTTTGATT
GGTAACTGTTTTCTGTATTGTTTAAAACGGATCAAAAAAAAATGTAAGTCTATTAGTAGA
GATTAAGTATTTATTGCTACACCTTAGTTGACGAATCGGTGTTCTTGTAAAGCCATATGT
TCTGTTCAAGTCTCGTTTGCTTGACATGATCATACCTGCAGGTGAAACACTAGACTATTT
GGAGTGTACATGGCTTGTGGTTTGGGGGTTTTTTGTTGTTGCTGTTTTCCGGTTTTGTTT
TTTTGTTTTGTTTTGGTTGTTCATCTGCCTTTTAACCCATTCACCGAAATTTTCCTTGTT
AACAAGCATCCCCAATGAACATTTCAGAGCAATCTGCGTATTTAACGTACCTAAACCATC
TTAGGCAAGTCAGTTGAAAAATGCTCGTGCTGCTAATGGAATTAGAGTGCGTTCATTTTC
CAGGCTAGTATTTTAAACTAGACGTCAGAACCCGGCACCTGAGCATGTTGATTGTTTGCT
GTACCTGGTGAGGTTTTCCCTCGTAAATTCTAAACCAGTGTATTTTTTTTTTTTTTTAGA
ACTGGTTTGTGTACATATATAGTGATTATGGATACTAATTCAATGTAATTTATAATTTTC
TATGTCAATATAAAAATACGTCACAGCCTTCTCAAACAGCTGAAGCAATATATTGTATAT
TGCCGTATCGTCTGGTGAAAGGGTTAAATTACTTCACCTCTTGCACTTTTAGATGCAAAT
CAGTTTTTCATTTCTGTAATAGAAAATTAATTCACGTATTTTTACATCATTTGTTTTTCC
TGACCAGTATTTAAAACCAAAAGGATATTCTGAAAAATGGCCAACAATTTTTTTAGAAAT
AGGATCCCAAGCAGCGTGCCTAAACATGACATTGCATATGGAAATAAAAGATCAAATGTC
TAATGCCTTATTTCTTACTTCCTGTCCCACGGTGAGGGGCGTAGAAACCCTCCGAGGGTC
CCCGAGGCAGAGCCAGCCCTCGAGGACCGCAGCCCGCCGCGCCCCGGGACGGACGGCCTG
GGGCGCCCGCTCAGGAATCCTTTCCGTCACGAGCTCCTCTCAGAAGACGGCCCTCGCGCC
CTCTCCCTGGACCCTGGCGCCGCCGGAGGACAGGGACCGCACCCGGCCCGGGACGGCGGC
GGCGGCCGGGGCGCTGCGGCCCCTCGCTCTGGGGTTGGTTGGCTCCTCGGCCCCGCCCAA
GGTAAACCCGCTGTCCCACTTCGTCCCCACCCCCGGCCGCTGACGGGCACGTGGGGTGCG
CCTGGGGGTAGGGGTGTGTGTCCGGGCGAGGACGCAGGGACGGGGCGGGGAGGAGGGCCG
GCCCAGGGCGCGGGGTGCTCTGTGAGGTCCTGCTTGAACTTGTGTGGGTTGGCCAGGCCG
AGTGCGAGGACGGATGTGTACCTGTGTTAAAAGTGACGACCACAACAATAAAGCCTGATT

Predicted RNA structure(s): 4 entry(ies)

More info

Predicted RNA structure(s): 4 entry(ies)

Help | Less info


               
               236-353, - strand, RNAz p=0.581492
               

               
               706-825, + strand, RNAz p=0.963704
               

               
               1052-1170, - strand, RNAz p=0.857483
               

               
               1291-1409, - strand, RNAz p=0.572847

Predicted RNA structure(s): 4 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               236-353, - strand, RNAz p=0.581492
               

               
               706-825, + strand, RNAz p=0.963704
               

               
               1052-1170, - strand, RNAz p=0.857483
               

               
               1291-1409, - strand, RNAz p=0.572847

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               284-360, + strand, RNAmicro p=0.978511
               

               
               1168-1251, + strand, RNAmicro p=0.952885

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               284-360, + strand, RNAmicro p=0.978511
               

               
               1168-1251, + strand, RNAmicro p=0.952885

Homologous human UTR: 1 entry(ies)

More info

Homologous human UTR: 1 entry(ies)

Help | Less info


               
               3' of BC020953, +

Homologous human UTR: 1 entry(ies)

Help | Less info

Human gene identifier and UTR site,
human gene reading direction


               
               3' of BC020953, +

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-1714, gnl|bosTau2|chr29 (41999244-41997535)
               

               
               1-1714, gnl|Hg17|chr11 (68137134-68138855)
               

               
               1-1714, gnl|Mm7|chr19 (3351833-3350174)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1714, gnl|bosTau2|chr29 (41999244-41997535)
               

               
               1-1714, gnl|Hg17|chr11 (68137134-68138855)
               

               
               1-1714, gnl|Mm7|chr19 (3351833-3350174)

Expressed library(ies): 10 entry(ies)

More info

Expressed library(ies): 10 entry(ies)

Help | Less info


               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

Expressed library(ies): 10 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               sin (0.174948)
               

               
               rec (0.17307)
               

               
               bfe (0.149858)
               

               
               spl (0.143184)
               

               
               nca (0.136874)
               

               
               kid (0.129735)
               

               
               spc (0.113366)
               

               
               cty (0.10408)

	236-353, - strand, RNAz p=0.581492
	706-825, + strand, RNAz p=0.963704
	1052-1170, - strand, RNAz p=0.857483
	1291-1409, - strand, RNAz p=0.572847

	284-360, + strand, RNAmicro p=0.978511
	1168-1251, + strand, RNAmicro p=0.952885

	1-1714, gnl\|bosTau2\|chr29 (41999244-41997535)
	1-1714, gnl\|Hg17\|chr11 (68137134-68138855)
	1-1714, gnl\|Mm7\|chr19 (3351833-3350174)

	ton (0.1755)
	fbs (0.175346)
	sin (0.174948)
	rec (0.17307)
	bfe (0.149858)
	spl (0.143184)
	nca (0.136874)
	kid (0.129735)
	spc (0.113366)
	cty (0.10408)