Ss1.1-Pig4-TMW8046F01.5
|
TGGGCGCGGGCTGTGTGGCTCGGCCTTCGGGCCTCGGCGGGCGCGTTCCGGGGCTTCACC
TCCAAGGCGGATCTTCAGGGAAGTGGCCGGATTACGGCCGAGCTGGTGGAACATTTGGAG
CGACTAGCGCTTGTGGACTTCGGCAACCAAGAGGCCGTGGCGCGGCTGGAGAAAGCCATT
GCCTTCGCCGACCGGCTCCGCGACGTGGACACGGACGGGGTGGAGCCCATGGACTCAGTC
CTGGAGGACAGATGTCTGTACCTGAGATCCGACAATGTGGTAGAAGGCAACTGTGCTGAA
GAACTACTACAAAACTCCCATCGAGTTGTGGAGGAGTATTTTGTGGCCCCCCCAGGTAAT
ATCTCTTGGTCAAAGCTGGATGAAAAAGAGCCCTTCTCATTCCGCTGAGTACTCTTCTGG
GAAGGAGTGTTCTATGAACATTGGAAGGACAACAACAGTATTTTGTTATTATGAACGCAA
ATATTCCCACTTCCTTCAGTCACCTGGAAAAAAAATTGATGGTTAGGCATTTTTTAGTAA
GTGACTCTTCTGAAGACCGACTTGGGAAAGATCTAGCCAAAGAGTTCCTGATGCCAGTGG
AAGTAGAAGGTATTGCCGATTTCCAAGGAAATGGATCAAGTATTTACTCACAGGCCATTA
AGTATGGATAGCTTGATCCCTTCCCTCAAAAGACTGTCTACCAAGCTGTACTTAAAGTGA
CCTTTTTTGTTTATGTAACTGTTAGACACTGCATCTGATCACTGTGTTGACAGCCTGAGC
TATCCTTTTCAGACTGTCAACTTGAGCAGCCTTTTACTTTTACTGAACATACTTAAATTT
GTTCCAGGGTACCCACCTTCTTCCAAGCAGAGGGCTGACTTTCTGCTGAGGTTAAAGGAG
TAGGGAGGCAGCTTTAGGAGGTAGGTGATAGATATGTATATGGCCTTCATGGTTGTGATT
TCATACCAGTATACTTAACCCCAAACTCATTGAATTGTATACATTAAATAAGTACAGCAT
TTTACAGATAATTATATTTCAATAAAGTGTTTTTCTTTTTTTTTTTTA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TGGGCGCGGGCTGTGTGGCTCGGCCTTCGGGCCTCGGCGGGCGCGTTCCGGGGCTTCACC
TCCAAGGCGGATCTTCAGGGAAGTGGCCGGATTACGGCCGAGCTGGTGGAACATTTGGAG
CGACTAGCGCTTGTGGACTTCGGCAACCAAGAGGCCGTGGCGCGGCTGGAGAAAGCCATT
GCCTTCGCCGACCGGCTCCGCGACGTGGACACGGACGGGGTGGAGCCCATGGACTCAGTC
CTGGAGGACAGATGTCTGTACCTGAGATCCGACAATGTGGTAGAAGGCAACTGTGCTGAA
GAACTACTACAAAACTCCCATCGAGTTGTGGAGGAGTATTTTGTGGCCCCCCCAGGTAAT
ATCTCTTGGTCAAAGCTGGATGAAAAAGAGCCCTTCTCATTCCGCTGAGTACTCTTCTGG
GAAGGAGTGTTCTATGAACATTGGAAGGACAACAACAGTATTTTGTTATTATGAACGCAA
ATATTCCCACTTCCTTCAGTCACCTGGAAAAAAAATTGATGGTTAGGCATTTTTTAGTAA
GTGACTCTTCTGAAGACCGACTTGGGAAAGATCTAGCCAAAGAGTTCCTGATGCCAGTGG
AAGTAGAAGGTATTGCCGATTTCCAAGGAAATGGATCAAGTATTTACTCACAGGCCATTA
AGTATGGATAGCTTGATCCCTTCCCTCAAAAGACTGTCTACCAAGCTGTACTTAAAGTGA
CCTTTTTTGTTTATGTAACTGTTAGACACTGCATCTGATCACTGTGTTGACAGCCTGAGC
TATCCTTTTCAGACTGTCAACTTGAGCAGCCTTTTACTTTTACTGAACATACTTAAATTT
GTTCCAGGGTACCCACCTTCTTCCAAGCAGAGGGCTGACTTTCTGCTGAGGTTAAAGGAG
TAGGGAGGCAGCTTTAGGAGGTAGGTGATAGATATGTATATGGCCTTCATGGTTGTGATT
TCATACCAGTATACTTAACCCCAAACTCATTGAATTGTATACATTAAATAAGTACAGCAT
TTTACAGATAATTATATTTCAATAAAGTGTTTTTCTTTTTTTTTTTTA
|
|
gi|61864017|ref|XP_587919.1| |
Protein identifier
|
gi|61864017|ref|XP_587919.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
12-573, gnl|bosTau2|chr1 (70391728-70392290) |
|
12-573, gnl|Hg17|chr7 (129787695-129787214) |
| |
|
76-251, gnl|bosTau2|chr17 (14801377-14801552) |
|
76-251, gnl|canFam2|chr26 (19379378-19379246) |
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76-251, gnl|danRer3|chr5 (10281490-10281358) |
|
76-251, gnl|dasNov1|scaffold_2418 (141532-141418) |
|
76-251, gnl|echTel1|scaffold_289721 (10466-10598) |
|
76-251, gnl|Hg17|chr12 (119347177-119347352) |
|
76-251, gnl|hg17|chr7 (129787503-129787634) |
|
76-251, gnl|loxAfr1|scaffold_22177 (21636-21768) |
|
76-251, gnl|mm7|chr5 (114561680-114561812) |
|
76-251, gnl|Mm7|chr5 (114561850-114561675) |
|
76-251, gnl|oryCun1|scaffold_165043 (8482-8670) |
|
76-251, gnl|panTro1|chr6 (132367505-132367636) |
|
76-251, gnl|rheMac2|chr3 (168010090-168010221) |
|
76-251, gnl|rn3|chrX (89178240-89178371) |
| |
|
893-1059, gnl|bosTau2|chr7 (67847189-67847024) |
| |
|
920-1054, gnl|bosTau2|chr15 (5723814-5723951) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
12-573, gnl|bosTau2|chr1 (70391728-70392290) |
|
12-573, gnl|Hg17|chr7 (129787695-129787214) |
| |
|
76-251, gnl|bosTau2|chr17 (14801377-14801552) |
|
76-251, gnl|canFam2|chr26 (19379378-19379246) |
|
76-251, gnl|danRer3|chr5 (10281490-10281358) |
|
76-251, gnl|dasNov1|scaffold_2418 (141532-141418) |
|
76-251, gnl|echTel1|scaffold_289721 (10466-10598) |
|
76-251, gnl|Hg17|chr12 (119347177-119347352) |
|
76-251, gnl|hg17|chr7 (129787503-129787634) |
|
76-251, gnl|loxAfr1|scaffold_22177 (21636-21768) |
|
76-251, gnl|mm7|chr5 (114561680-114561812) |
|
76-251, gnl|Mm7|chr5 (114561850-114561675) |
|
76-251, gnl|oryCun1|scaffold_165043 (8482-8670) |
|
76-251, gnl|panTro1|chr6 (132367505-132367636) |
|
76-251, gnl|rheMac2|chr3 (168010090-168010221) |
|
76-251, gnl|rn3|chrX (89178240-89178371) |
| |
|
893-1059, gnl|bosTau2|chr7 (67847189-67847024) |
| |
|
920-1054, gnl|bosTau2|chr15 (5723814-5723951) |
|
pro (0.512033) |
|
bla (0.373042) |
|
tbr (0.308356) |
|
pla (0.267344) |
|
pgl (0.236967) |
|
med (0.232504) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
eye (0.170503) |
|
cki (0.165235) |
|
cli (0.152812) |
|
fat (0.147427) |
|
ski (0.146735) |
|
spl (0.143184) |
|
csk (0.140746) |
|
hlv (0.139256) |
|
ret (0.128733) |
|
ese (0.126502) |
|
cly (0.120642) |
|
clu (0.119646) |
|
spc (0.113366) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
|
pro (0.512033) |
|
bla (0.373042) |
|
tbr (0.308356) |
|
pla (0.267344) |
|
pgl (0.236967) |
|
med (0.232504) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
eye (0.170503) |
|
cki (0.165235) |
|
cli (0.152812) |
|
fat (0.147427) |
|
ski (0.146735) |
|
spl (0.143184) |
|
csk (0.140746) |
|
hlv (0.139256) |
|
ret (0.128733) |
|
ese (0.126502) |
|
cly (0.120642) |
|
clu (0.119646) |
|
spc (0.113366) |
|
cty (0.10408) |
|
nbm (0.0993246) |
|
eje (0.0988338) |
|
ldo (0.0970026) |
