Non-Coding RNA Search

Ss1.1-Pig4-TMW8046F05.3

Sequence:


               
               CCGCCGCCGACGCCGTCGCTACCGCCGCGTTCGGTTGTAGAATTTGGAATCCCTGCTCCT
CGTTAACAATGAAGCAGAGTTCGAACGTGCCAGCTTTCCTCAGCAAGCTGTGGACGCTTG
TGGAGGAAACCCACACCAACGAGTTCATCACCTGGAGTCAGAATGGCCAGAGTTTTCTGG
TTTTGGATGAACAAAGATTTGCAAAAGAAATTCTTCCCAAATACTTCAAGCACAATAATA
TGGCAAGCTTTGTGAGGCAGCTGAATATGTATGGTTTTCGTAAAGTAGTACATATTGACT
CTGGAATTGTGAAGCAGGAACGAGATGGTCCTGTTGAATTTCAGCATCCTTACTTCAAAC
AAGGCCAGGATGACTTGTTGGAGAACATTAAAAGGAAGGTTTCATCTTCAAAACCAGAAG
AAAATAAAATTCGTCAGGAAGATTTAACAAAAATTATAAGTAGTGCTCAGAAGGTTCAAA
TAAAACAAGAAACTATTGAGTCCAGGCTTTCTGAATTGAAAAGTGAGAATGAGTCCCTTT
GGAAGGAGGTGTCAGAATTAAGAGCAAAACATGCACAACAACAGCAAGTTATTCGAAAGA
TTGTCCAGTTTATTGTTACATTGGTTCAGAATAACCAACTTGTGAGTTTAAAACGTAAAA
GGCCTCTTCTTCTAAACACTAATGGAGCCCAAAAGAAGAATTTGTTTCAGCACATAGTAA
AAGAGCCAGCTGATAATCACCATCATAAAGTTCCACATAGTAGGAGTGAAGGTTTAAAGC
CAAGGGAGCGGATTTCAGATGATATCATTATTTATGATGTTACTGATGATAATGCAGATG
AAGAAAATATCCCAGTTATTCCAGAAACTAATGAGGATGTTATATCTGATCCTTCCAACT
GTAGCCAATACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCCGCCGACGCCGTCGCTACCGCCGCGTTCGGTTGTAGAATTTGGAATCCCTGCTCCT
CGTTAACAATGAAGCAGAGTTCGAACGTGCCAGCTTTCCTCAGCAAGCTGTGGACGCTTG
TGGAGGAAACCCACACCAACGAGTTCATCACCTGGAGTCAGAATGGCCAGAGTTTTCTGG
TTTTGGATGAACAAAGATTTGCAAAAGAAATTCTTCCCAAATACTTCAAGCACAATAATA
TGGCAAGCTTTGTGAGGCAGCTGAATATGTATGGTTTTCGTAAAGTAGTACATATTGACT
CTGGAATTGTGAAGCAGGAACGAGATGGTCCTGTTGAATTTCAGCATCCTTACTTCAAAC
AAGGCCAGGATGACTTGTTGGAGAACATTAAAAGGAAGGTTTCATCTTCAAAACCAGAAG
AAAATAAAATTCGTCAGGAAGATTTAACAAAAATTATAAGTAGTGCTCAGAAGGTTCAAA
TAAAACAAGAAACTATTGAGTCCAGGCTTTCTGAATTGAAAAGTGAGAATGAGTCCCTTT
GGAAGGAGGTGTCAGAATTAAGAGCAAAACATGCACAACAACAGCAAGTTATTCGAAAGA
TTGTCCAGTTTATTGTTACATTGGTTCAGAATAACCAACTTGTGAGTTTAAAACGTAAAA
GGCCTCTTCTTCTAAACACTAATGGAGCCCAAAAGAAGAATTTGTTTCAGCACATAGTAA
AAGAGCCAGCTGATAATCACCATCATAAAGTTCCACATAGTAGGAGTGAAGGTTTAAAGC
CAAGGGAGCGGATTTCAGATGATATCATTATTTATGATGTTACTGATGATAATGCAGATG
AAGAAAATATCCCAGTTATTCCAGAAACTAATGAGGATGTTATATCTGATCCTTCCAACT
GTAGCCAATACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|13529107|gb|AAH05329.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|13529107|gb|AAH05329.1|

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               44-161, - strand, RNAz p=0.513722
               

               
               406-523, + strand, RNAz p=0.563613
               

               
               781-898, + strand, RNAz p=0.983985
               

               
               781-878, + strand, RNAz p=0.900453

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               44-161, - strand, RNAz p=0.513722
               

               
               406-523, + strand, RNAz p=0.563613
               

               
               781-898, + strand, RNAz p=0.983985
               

               
               781-878, + strand, RNAz p=0.900453

Aligned organism(s): 21 entry(ies)

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Aligned organism(s): 21 entry(ies)

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               3-161, gnl|bosTau2|chr9 (14811706-14811547)
               

               
               3-161, gnl|Hg17|chr6 (122762513-122762674)
               

               
               3-161, gnl|Mm7|chr10 (57304269-57304457)
               


               
               396-523, gnl|bosTau2|chr9 (14791205-14791078)
               

               
               396-523, gnl|Hg17|chr6 (122776366-122776493)
               

               
               396-523, gnl|Mm7|chr10 (57315350-57315477)
               


               
               750-898, gnl|bosTau2|chr9 (14782689-14782541)
               

               
               750-898, gnl|canFam2|chr1 (64854470-64854583)
               

               
               750-898, gnl|dasNov1|scaffold_80421 (162-275)
               

               
               750-898, gnl|echTel1|scaffold_312484 (84993-85106)
               

               
               750-898, gnl|galGal2|chr3 (59792804-59792670)
               

               
               750-898, gnl|hg17|chr6 (122784987-122785100)
               

               
               750-898, gnl|Hg17|chr6 (122784994-122785142)
               

               
               750-898, gnl|mm7|chr10 (57322431-57322544)
               

               
               750-898, gnl|Mm7|chr10 (57322438-57322586)
               

               
               750-898, gnl|monDom2|scaffold_0 (92693159-92693046)
               

               
               750-898, gnl|oryCun1|scaffold_186015 (9087-8974)
               

               
               750-898, gnl|panTro1|chr5 (125302132-125302245)
               

               
               750-898, gnl|rheMac2|chr4 (141512353-141512240)
               

               
               750-898, gnl|rn3|chr20 (36542846-36542959)
               

               
               750-898, gnl|xenTro1|scaffold_259 (1168737-1168862)

Aligned organism(s): 21 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-161, gnl|bosTau2|chr9 (14811706-14811547)
               

               
               3-161, gnl|Hg17|chr6 (122762513-122762674)
               

               
               3-161, gnl|Mm7|chr10 (57304269-57304457)
               


               
               396-523, gnl|bosTau2|chr9 (14791205-14791078)
               

               
               396-523, gnl|Hg17|chr6 (122776366-122776493)
               

               
               396-523, gnl|Mm7|chr10 (57315350-57315477)
               


               
               750-898, gnl|bosTau2|chr9 (14782689-14782541)
               

               
               750-898, gnl|canFam2|chr1 (64854470-64854583)
               

               
               750-898, gnl|dasNov1|scaffold_80421 (162-275)
               

               
               750-898, gnl|echTel1|scaffold_312484 (84993-85106)
               

               
               750-898, gnl|galGal2|chr3 (59792804-59792670)
               

               
               750-898, gnl|hg17|chr6 (122784987-122785100)
               

               
               750-898, gnl|Hg17|chr6 (122784994-122785142)
               

               
               750-898, gnl|mm7|chr10 (57322431-57322544)
               

               
               750-898, gnl|Mm7|chr10 (57322438-57322586)
               

               
               750-898, gnl|monDom2|scaffold_0 (92693159-92693046)
               

               
               750-898, gnl|oryCun1|scaffold_186015 (9087-8974)
               

               
               750-898, gnl|panTro1|chr5 (125302132-125302245)
               

               
               750-898, gnl|rheMac2|chr4 (141512353-141512240)
               

               
               750-898, gnl|rn3|chr20 (36542846-36542959)
               

               
               750-898, gnl|xenTro1|scaffold_259 (1168737-1168862)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               che (0.136314)
               

               
               cty (0.10408)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               che (0.136314)
               

               
               cty (0.10408)

	44-161, - strand, RNAz p=0.513722
	406-523, + strand, RNAz p=0.563613
	781-898, + strand, RNAz p=0.983985
	781-878, + strand, RNAz p=0.900453

	3-161, gnl\|bosTau2\|chr9 (14811706-14811547)
	3-161, gnl\|Hg17\|chr6 (122762513-122762674)
	3-161, gnl\|Mm7\|chr10 (57304269-57304457)

	396-523, gnl\|bosTau2\|chr9 (14791205-14791078)
	396-523, gnl\|Hg17\|chr6 (122776366-122776493)
	396-523, gnl\|Mm7\|chr10 (57315350-57315477)

	750-898, gnl\|bosTau2\|chr9 (14782689-14782541)
	750-898, gnl\|canFam2\|chr1 (64854470-64854583)
	750-898, gnl\|dasNov1\|scaffold_80421 (162-275)
	750-898, gnl\|echTel1\|scaffold_312484 (84993-85106)
	750-898, gnl\|galGal2\|chr3 (59792804-59792670)
	750-898, gnl\|hg17\|chr6 (122784987-122785100)
	750-898, gnl\|Hg17\|chr6 (122784994-122785142)
	750-898, gnl\|mm7\|chr10 (57322431-57322544)
	750-898, gnl\|Mm7\|chr10 (57322438-57322586)
	750-898, gnl\|monDom2\|scaffold_0 (92693159-92693046)
	750-898, gnl\|oryCun1\|scaffold_186015 (9087-8974)
	750-898, gnl\|panTro1\|chr5 (125302132-125302245)
	750-898, gnl\|rheMac2\|chr4 (141512353-141512240)
	750-898, gnl\|rn3\|chr20 (36542846-36542959)
	750-898, gnl\|xenTro1\|scaffold_259 (1168737-1168862)