Non-Coding RNA Search

Ss1.1-Pig4-TMW8046F13.5

Sequence:


               
               GTTTCCTTCTTACAGCACATGCACTTACAATGAACGCTCTGTACTATCCTCACACGTGTT
TACTACTGCTGGGGCCTTCCTTCATCCTTCGAGGGCTATTTTGTACTTCCTGCAGCGGGC
AGCTGACTCACAAAGGTTATGGCACATGTCCCTCTCGTGTACATGATGTGGTGGCACGCC
GTGCGTACTAGGAATGCAAGATGACACCATGGGACTTTCCTAGACTCTTTCATTCGGGAT
CTCTGATCAATTACACATCATCTTTGCTTCCCGTTTTCCTTCTCCCCGCCTCTCACACCT
CCTGCCCCCATCTCCCCCGAAAGCTGCGGGAGCTTGGAGCTGAATGTTTCTTCCCGCAGG
CAACTGAGATAGTTACTTTTAGGGGGAAAGTCCGCTTCTCTTTTTTTGGTCATGTGTCAT
TGCCAAAAAGATAACCCTCCTCAAAGATAAGCGTCCTTTTCTTCACTTTATCTTTCAATA
TCTAAAGGAAAAAGCTGCAAGGGTGCGAAGGGCCTGTGCCAGAGGAAAAAAACACACACA
GGGAAACTGCTTTTTTAAAAATCAAGTGTAGAGAATAGTCGTTTTTAAACTAAATTAGAG
AATTGCGATCAAATGGCAGTCCTCAAAGGCGTAACAAGTTCATCTTTCTTTCACCATAGG
GGTTTATAGTTCTTTGGCTTGTGCTACTCTGGACTCATTTTACTGTTTCTGTTTTTATTA
TCTTAAGTGCTAATTAACAAGAAGAAATAAAATTTAAAAAAAAAACCTGTAGTTTCATTA
CCTTTTTGAATAATGTCATACAAAAACAATGTATTTGTGTTTTTCTGTGCTGTGAGAATT
GTTGTTTGTAGACGAATAATATCATTTTGTTTAGAATTACGAAATAGTTTTTAAATATTG
TCTGAGAAAAGCCAAAGTTAATGCAACCTAGTGGAAACTGTAAGACCATTTGAGTATTGT
TTGTTTTATTGATGCATTTGGATTTTGTTGTTTGATGGAATTTGAGCCAAAAAAAAAAAA
AAATAACGCAGGCTTTCCTATTTCTACAACTGATTGTACTTATGCATTTTGTACCAGTGG
AACTTTTTATACTGGAGATTAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTCCTTCTTACAGCACATGCACTTACAATGAACGCTCTGTACTATCCTCACACGTGTT
TACTACTGCTGGGGCCTTCCTTCATCCTTCGAGGGCTATTTTGTACTTCCTGCAGCGGGC
AGCTGACTCACAAAGGTTATGGCACATGTCCCTCTCGTGTACATGATGTGGTGGCACGCC
GTGCGTACTAGGAATGCAAGATGACACCATGGGACTTTCCTAGACTCTTTCATTCGGGAT
CTCTGATCAATTACACATCATCTTTGCTTCCCGTTTTCCTTCTCCCCGCCTCTCACACCT
CCTGCCCCCATCTCCCCCGAAAGCTGCGGGAGCTTGGAGCTGAATGTTTCTTCCCGCAGG
CAACTGAGATAGTTACTTTTAGGGGGAAAGTCCGCTTCTCTTTTTTTGGTCATGTGTCAT
TGCCAAAAAGATAACCCTCCTCAAAGATAAGCGTCCTTTTCTTCACTTTATCTTTCAATA
TCTAAAGGAAAAAGCTGCAAGGGTGCGAAGGGCCTGTGCCAGAGGAAAAAAACACACACA
GGGAAACTGCTTTTTTAAAAATCAAGTGTAGAGAATAGTCGTTTTTAAACTAAATTAGAG
AATTGCGATCAAATGGCAGTCCTCAAAGGCGTAACAAGTTCATCTTTCTTTCACCATAGG
GGTTTATAGTTCTTTGGCTTGTGCTACTCTGGACTCATTTTACTGTTTCTGTTTTTATTA
TCTTAAGTGCTAATTAACAAGAAGAAATAAAATTTAAAAAAAAAACCTGTAGTTTCATTA
CCTTTTTGAATAATGTCATACAAAAACAATGTATTTGTGTTTTTCTGTGCTGTGAGAATT
GTTGTTTGTAGACGAATAATATCATTTTGTTTAGAATTACGAAATAGTTTTTAAATATTG
TCTGAGAAAAGCCAAAGTTAATGCAACCTAGTGGAAACTGTAAGACCATTTGAGTATTGT
TTGTTTTATTGATGCATTTGGATTTTGTTGTTTGATGGAATTTGAGCCAAAAAAAAAAAA
AAATAACGCAGGCTTTCCTATTTCTACAACTGATTGTACTTATGCATTTTGTACCAGTGG
AACTTTTTATACTGGAGATTAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-265, gnl|bosTau2|chr13 (5638986-5638727)
               

               
               1-265, gnl|Hg17|chr10 (11414773-11415045)
               

               
               1-265, gnl|Mm7|chr2 (6460679-6460422)
               


               
               326-1104, gnl|bosTau2|chr13 (5638614-5637856)
               

               
               326-1104, gnl|Hg17|chr10 (11415161-11415900)
               

               
               326-1104, gnl|Mm7|chr2 (6460326-6459590)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-265, gnl|bosTau2|chr13 (5638986-5638727)
               

               
               1-265, gnl|Hg17|chr10 (11414773-11415045)
               

               
               1-265, gnl|Mm7|chr2 (6460679-6460422)
               


               
               326-1104, gnl|bosTau2|chr13 (5638614-5637856)
               

               
               326-1104, gnl|Hg17|chr10 (11415161-11415900)
               

               
               326-1104, gnl|Mm7|chr2 (6460326-6459590)

Expressed library(ies): 24 entry(ies)

More info

Expressed library(ies): 24 entry(ies)

Help | Less info


               
               pro (0.512033)
               

               
               fat (0.442282)
               

               
               cbr (0.383926)
               

               
               thg (0.380373)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               cty (0.10408)

Expressed library(ies): 24 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (0.512033)
               

               
               fat (0.442282)
               

               
               cbr (0.383926)
               

               
               thg (0.380373)
               

               
               vin (0.332557)
               

               
               fco (0.314416)
               

               
               ste (0.270416)
               

               
               pla (0.267344)
               

               
               cbe (0.239234)
               

               
               ecc (0.23007)
               

               
               fcc (0.197785)
               

               
               sag (0.182715)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               fhi (0.169578)
               

               
               isp (0.150376)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               spl (0.143184)
               

               
               lnt (0.142308)
               

               
               ova (0.129132)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               cty (0.10408)

	1-265, gnl\|bosTau2\|chr13 (5638986-5638727)
	1-265, gnl\|Hg17\|chr10 (11414773-11415045)
	1-265, gnl\|Mm7\|chr2 (6460679-6460422)

	326-1104, gnl\|bosTau2\|chr13 (5638614-5637856)
	326-1104, gnl\|Hg17\|chr10 (11415161-11415900)
	326-1104, gnl\|Mm7\|chr2 (6460326-6459590)

	pro (0.512033)
	fat (0.442282)
	cbr (0.383926)
	thg (0.380373)
	vin (0.332557)
	fco (0.314416)
	ste (0.270416)
	pla (0.267344)
	cbe (0.239234)
	ecc (0.23007)
	fcc (0.197785)
	sag (0.182715)
	fbs (0.175346)
	rec (0.17307)
	fhi (0.169578)
	isp (0.150376)
	bfe (0.149858)
	ski (0.146735)
	spl (0.143184)
	lnt (0.142308)
	ova (0.129132)
	pgl (0.118483)
	med (0.116252)
	cty (0.10408)