Non-Coding RNA Search

Ss1.1-Pig4-TMW8046G02.3

Sequence:


               
               GGAGAGCCGTCTGGTACCTTGATAGCATCCGAAACAGCATCGGTCATAATTCTCCTGTGA
AATCTATAAATATCCTGCTCAGACCTGAATCTCCATGTTCTTAATCCTTCACTGGGAACC
TGTAAATCCCAAGTCACCCTCACCCAACCCCTTTGTGACAGAAGAAGTAGGGATGTGGAA
ACCACTCTGACTTCAGAGCCTGGTAGGCTTGGATCCCTCTCCCAACCCTGCCACCTGCCA
GCTGGGCAACCAGAACATGCACCTTAAACTCCAGCTCCAGTGTCATTTGCAATACTGGAA
TAACAGTAATAAGGCCTACCTTGCAGGGTTGCTGCAATGGTTAGGAACCATTCTGTAAAG
AACCTGGCATGGTTTCTAGCATGTAGTAGCTGCGATTCAATGACTGGCAACCTTGTGATA
TAATTACCATCCCCTGCCCACCTGCCAAAACCTAAACACAGCTGTTTCCTCATTTCTGTC
TGTGGTTTTCTAATTCTACTCATTTATTCTGTGACCCTAGTGATTCCATGAGGAATTGGT
TCTTCCCACCTCTTTTCCCAGAGACCTTATAATCCTTGAAAAGATGAAATAATGATCTGA
TTTAGCCTCTCTACGGAAGTGCCAGGAAGTTGTTTGCATCTCTTAACCTCCCTTTTTGTC
TCTCTTAAGTTGGTCTTTCTTTTTATTGGATTTCCGCATTTTCCTATTTTCCCAAAGACC
TGAGATCTAAAGTGATGCTCTGTCCCCTTGTATGCATGGCCTTCCTTTCTACATCTTCAA
CACCTTACTTTCCCTTTGTAACTATGAAAAAAAGTGTCAATAAAATAATTATGGGCAAAC
CAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAGAGCCGTCTGGTACCTTGATAGCATCCGAAACAGCATCGGTCATAATTCTCCTGTGA
AATCTATAAATATCCTGCTCAGACCTGAATCTCCATGTTCTTAATCCTTCACTGGGAACC
TGTAAATCCCAAGTCACCCTCACCCAACCCCTTTGTGACAGAAGAAGTAGGGATGTGGAA
ACCACTCTGACTTCAGAGCCTGGTAGGCTTGGATCCCTCTCCCAACCCTGCCACCTGCCA
GCTGGGCAACCAGAACATGCACCTTAAACTCCAGCTCCAGTGTCATTTGCAATACTGGAA
TAACAGTAATAAGGCCTACCTTGCAGGGTTGCTGCAATGGTTAGGAACCATTCTGTAAAG
AACCTGGCATGGTTTCTAGCATGTAGTAGCTGCGATTCAATGACTGGCAACCTTGTGATA
TAATTACCATCCCCTGCCCACCTGCCAAAACCTAAACACAGCTGTTTCCTCATTTCTGTC
TGTGGTTTTCTAATTCTACTCATTTATTCTGTGACCCTAGTGATTCCATGAGGAATTGGT
TCTTCCCACCTCTTTTCCCAGAGACCTTATAATCCTTGAAAAGATGAAATAATGATCTGA
TTTAGCCTCTCTACGGAAGTGCCAGGAAGTTGTTTGCATCTCTTAACCTCCCTTTTTGTC
TCTCTTAAGTTGGTCTTTCTTTTTATTGGATTTCCGCATTTTCCTATTTTCCCAAAGACC
TGAGATCTAAAGTGATGCTCTGTCCCCTTGTATGCATGGCCTTCCTTTCTACATCTTCAA
CACCTTACTTTCCCTTTGTAACTATGAAAAAAAGTGTCAATAAAATAATTATGGGCAAAC
CAAAAAAAAAAA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               46-507, gnl|bosTau2|chr23 (23215375-23214933)
               

               
               46-507, gnl|Hg17|chr6 (31621037-31620564)
               

               
               46-507, gnl|Mm7|chr17 (33334161-33334582)
               


               
               510-843, gnl|bosTau2|chr23 (23214801-23214454)
               

               
               510-843, gnl|Hg17|chr6 (31620561-31620218)
               

               
               510-843, gnl|Mm7|chr17 (33334609-33334932)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-507, gnl|bosTau2|chr23 (23215375-23214933)
               

               
               46-507, gnl|Hg17|chr6 (31621037-31620564)
               

               
               46-507, gnl|Mm7|chr17 (33334161-33334582)
               


               
               510-843, gnl|bosTau2|chr23 (23214801-23214454)
               

               
               510-843, gnl|Hg17|chr6 (31620561-31620218)
               

               
               510-843, gnl|Mm7|chr17 (33334609-33334932)

Expressed library(ies): 5 entry(ies)

More info

Expressed library(ies): 5 entry(ies)

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               fcc (0.197785)
               

               
               fco (0.157208)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

Expressed library(ies): 5 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (0.197785)
               

               
               fco (0.157208)
               

               
               ret (0.128733)
               

               
               ebs (0.118301)
               

               
               spc (0.113366)

	46-507, gnl\|bosTau2\|chr23 (23215375-23214933)
	46-507, gnl\|Hg17\|chr6 (31621037-31620564)
	46-507, gnl\|Mm7\|chr17 (33334161-33334582)

	510-843, gnl\|bosTau2\|chr23 (23214801-23214454)
	510-843, gnl\|Hg17\|chr6 (31620561-31620218)
	510-843, gnl\|Mm7\|chr17 (33334609-33334932)

	fcc (0.197785)
	fco (0.157208)
	ret (0.128733)
	ebs (0.118301)
	spc (0.113366)