Non-Coding RNA Search

Ss1.1-Pig4-TMW8046G10.3

Sequence:


               
               CAGGCATGGGTGGGCAGACATTAAAAAGTGCCATGTTTGTTAGTGCTTGGACAGGAATGT
ATAAAACTTTTTTTTTTTGTCTTTTAAGGACTGCTCTCGTGGCATATGGAGGTTCCTATG
CTAGGGGTCCAGAGCTGTAGCTGCCAGCCTACACCACAGCCTCAGCAATGTGGGATCCGA
GCCAAATCTGTGACCTACGCCACAGCTCACAGCAATGCCGGATCCCTAACCCACTGAGCG
AGGGCAGGGATTGAACCCACGTTGTCATGGAAGCTAGTCGGGTTCGTTAACCACTGAGCC
ACAACGGGAACTCCCAAAACATTTTTAATGTACAGCTCTCTTACTGCACTGCCCATTTGT
GTTTTATAAGGCAGGAAAAAAGCAAAAGCCTTAATTAAGGCTTTCTACCTTTCAGTTGCT
TGGATGACTGGAAACTGGCCTATGCCATTTGGAACATCAGGCTTTCAAATCTAATATGGT
CCAAGGATCTTCTAACTCAAGGTAAAAAGAACTTCTCCAGAACTGTTTATAAATCTAATC
TGTGGCACCATCTCCATCTACTTTAAATAGGTGTTAATGGGTTTCTGGCCCAAACTATTA
TACTCTTATAAAATGCACTCAACTTTCTTACTTTAAAAACTGGCCTTTTTATTTCTCTTG
AAGAAGTTGCTAGCAGGTTCCTAATTGTAGTGTGAAGAGCAGAGAAAACATTTGTTTTAA
CTGATGCCACTGGGGCCAAAGATCATCCAACATGACTTGTCTAACCTGGGGCACAGGAGA
GTAAGCCTGACCCTAAAGTGCAGCTGCTGAAAGGATTAGGACTCGTGTACAAGTGGAGCA
GTTTACCCTCGCGCATTTATGCCGCACTAATGATGGTGTACTTCCCAGTAAAAATAAAGC
AGCTTGACATGTTAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CAGGCATGGGTGGGCAGACATTAAAAAGTGCCATGTTTGTTAGTGCTTGGACAGGAATGT
ATAAAACTTTTTTTTTTTGTCTTTTAAGGACTGCTCTCGTGGCATATGGAGGTTCCTATG
CTAGGGGTCCAGAGCTGTAGCTGCCAGCCTACACCACAGCCTCAGCAATGTGGGATCCGA
GCCAAATCTGTGACCTACGCCACAGCTCACAGCAATGCCGGATCCCTAACCCACTGAGCG
AGGGCAGGGATTGAACCCACGTTGTCATGGAAGCTAGTCGGGTTCGTTAACCACTGAGCC
ACAACGGGAACTCCCAAAACATTTTTAATGTACAGCTCTCTTACTGCACTGCCCATTTGT
GTTTTATAAGGCAGGAAAAAAGCAAAAGCCTTAATTAAGGCTTTCTACCTTTCAGTTGCT
TGGATGACTGGAAACTGGCCTATGCCATTTGGAACATCAGGCTTTCAAATCTAATATGGT
CCAAGGATCTTCTAACTCAAGGTAAAAAGAACTTCTCCAGAACTGTTTATAAATCTAATC
TGTGGCACCATCTCCATCTACTTTAAATAGGTGTTAATGGGTTTCTGGCCCAAACTATTA
TACTCTTATAAAATGCACTCAACTTTCTTACTTTAAAAACTGGCCTTTTTATTTCTCTTG
AAGAAGTTGCTAGCAGGTTCCTAATTGTAGTGTGAAGAGCAGAGAAAACATTTGTTTTAA
CTGATGCCACTGGGGCCAAAGATCATCCAACATGACTTGTCTAACCTGGGGCACAGGAGA
GTAAGCCTGACCCTAAAGTGCAGCTGCTGAAAGGATTAGGACTCGTGTACAAGTGGAGCA
GTTTACCCTCGCGCATTTATGCCGCACTAATGATGGTGTACTTCCCAGTAAAAATAAAGC
AGCTTGACATGTTAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               690-781, + strand, RNAz p=0.52013

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               690-781, + strand, RNAz p=0.52013

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_007370, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_007370, +

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               315-905, gnl|bosTau2|chr17 (32234695-32234103)
               

               
               315-905, gnl|Hg17|chr12 (116931997-116932626)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               315-905, gnl|bosTau2|chr17 (32234695-32234103)
               

               
               315-905, gnl|Hg17|chr12 (116931997-116932626)

Expressed library(ies): 12 entry(ies)

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Expressed library(ies): 12 entry(ies)

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               ece (0.45861)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               lun (0.150489)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

Expressed library(ies): 12 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.45861)
               

               
               cmu (0.186393)
               

               
               sag (0.182715)
               

               
               lun (0.150489)
               

               
               nmm (0.132802)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               ese (0.126502)
               

               
               pgl (0.118483)
               

               
               med (0.116252)
               

               
               spc (0.113366)
               

               
               nbm (0.0993246)

	315-905, gnl\|bosTau2\|chr17 (32234695-32234103)
	315-905, gnl\|Hg17\|chr12 (116931997-116932626)

	ece (0.45861)
	cmu (0.186393)
	sag (0.182715)
	lun (0.150489)
	nmm (0.132802)
	ova (0.129132)
	thg (0.126791)
	ese (0.126502)
	pgl (0.118483)
	med (0.116252)
	spc (0.113366)
	nbm (0.0993246)