Non-Coding RNA Search

Ss1.1-Pig4-TMW8046G15.5

Sequence:


               
               AACGAGCTCATCGGCCAGACTGTGCGCATCTCCCAGGGGCCCTACAAAGGCTACATTGGC
GTGGTAAAAGACGCCACGGAGTCCACGGCCCGCGTGGAGCTGCACTCCACCTGCCAGACC
ATCTCAGTGGACCGTCAGCGGCTCACCACAGTGGGCTCACGGCGCCCGGGCGGCATGACC
TCAACCTACGGACGGACGCCCATGTATGGCTCCCAGACACCCATGTACGGCTCTGGCTCC
CGCACGCCCATGTATGGCTCTCAGACCCCTCTCCAGGATGGCAGCCGCACCCCACATTAT
GGCTCTCAGACGCCCCTGCATGACGGCAGCCGCACTCCTGCACAGAGTGGAGCCTGGGAC
CCCAACAACCCTAACACACCGTCTAGGGCTGAAGAAGAGTATGAGTATGCCTTTGATGAC
GAGCCTACCCCATCCCCACAAGCTTACGGGGGTACCCCCAACCCCCAAACACCTGGCTAC
CCAGACCCCTCATCCCCACAGGTCAACCCACAGTACAACCCACAGACACCGGGGACGCCA
GCCATGTACAACACAGACCAGTTCTCCCCCTATGCGGCCCCCTCCCCACAAGGCTCCTAC
CAGCCCAGCCCCAGCCCGCAGAGCTACCACCAGGTGGCGCCAAGCCCTGCAGGCTACCAG
AACACCCATTCACCAGCCAGCTATCACCCCACACCCTCGCCCATGGCCTATCAGGCCAGC
CCTAGCCCTAGCCCCGTTGGCTATAGTCCGATGACACCCGGAGCTCCCTCCCCTGGTGGC
TACAACCCACACACGCCTGGCTCAGGCATTGAGCAGAACTCCAGCGACTGGGTAACCACT
GACATCCAGGTGAAGGTGCGGGACACCTACCTGGATACACAAGTGGTGGGGCAGACAGGT
GTCATCCGAAGTGTCACGGGAGGCATGTGCTCTGTGTACCTGAAGGACAGTGAGAAGGTT
GTCAGCATCTCCAGTGAGCACCTGGAGCCCATCACCCCCACCAAGAACAACAAGGTGAAG
GTGATCCTGGGTGAGGATCGGGAAGCCACAGGTGTCCTGCTGAGCATTGATGGCGAGGAT
GGCATTGTCCGCATGGACCTTGATGAACAGCTCAAGATCCTCAACCTCCGCTTCCTGGGG
AAGCTCCTGGAGGCCTGAGACAGGCAGGGTGGACTCTGGCACATGTCTGGCAGATGGAGA
GTGTCCCTCCTTCCTCCCCTGGCCCTTGGCTCTGACACAGGATCTGGGGCCTGGAGCAGG
GTTAGCCTGATTGTTCAGGATTTCTTTTATTTTCATTTATGGGTTCCTATCTTCCTCCCT
ATTCATGGGAATCAGAGTAGAGTCTGGGGGAGGGTCCCCACCTTCTTGTACCCCACCTTC
CTCGGCTTGCTTTTGTGTTATGGTCTTTAATAAAAAGCTCTTTGGTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AACGAGCTCATCGGCCAGACTGTGCGCATCTCCCAGGGGCCCTACAAAGGCTACATTGGC
GTGGTAAAAGACGCCACGGAGTCCACGGCCCGCGTGGAGCTGCACTCCACCTGCCAGACC
ATCTCAGTGGACCGTCAGCGGCTCACCACAGTGGGCTCACGGCGCCCGGGCGGCATGACC
TCAACCTACGGACGGACGCCCATGTATGGCTCCCAGACACCCATGTACGGCTCTGGCTCC
CGCACGCCCATGTATGGCTCTCAGACCCCTCTCCAGGATGGCAGCCGCACCCCACATTAT
GGCTCTCAGACGCCCCTGCATGACGGCAGCCGCACTCCTGCACAGAGTGGAGCCTGGGAC
CCCAACAACCCTAACACACCGTCTAGGGCTGAAGAAGAGTATGAGTATGCCTTTGATGAC
GAGCCTACCCCATCCCCACAAGCTTACGGGGGTACCCCCAACCCCCAAACACCTGGCTAC
CCAGACCCCTCATCCCCACAGGTCAACCCACAGTACAACCCACAGACACCGGGGACGCCA
GCCATGTACAACACAGACCAGTTCTCCCCCTATGCGGCCCCCTCCCCACAAGGCTCCTAC
CAGCCCAGCCCCAGCCCGCAGAGCTACCACCAGGTGGCGCCAAGCCCTGCAGGCTACCAG
AACACCCATTCACCAGCCAGCTATCACCCCACACCCTCGCCCATGGCCTATCAGGCCAGC
CCTAGCCCTAGCCCCGTTGGCTATAGTCCGATGACACCCGGAGCTCCCTCCCCTGGTGGC
TACAACCCACACACGCCTGGCTCAGGCATTGAGCAGAACTCCAGCGACTGGGTAACCACT
GACATCCAGGTGAAGGTGCGGGACACCTACCTGGATACACAAGTGGTGGGGCAGACAGGT
GTCATCCGAAGTGTCACGGGAGGCATGTGCTCTGTGTACCTGAAGGACAGTGAGAAGGTT
GTCAGCATCTCCAGTGAGCACCTGGAGCCCATCACCCCCACCAAGAACAACAAGGTGAAG
GTGATCCTGGGTGAGGATCGGGAAGCCACAGGTGTCCTGCTGAGCATTGATGGCGAGGAT
GGCATTGTCCGCATGGACCTTGATGAACAGCTCAAGATCCTCAACCTCCGCTTCCTGGGG
AAGCTCCTGGAGGCCTGAGACAGGCAGGGTGGACTCTGGCACATGTCTGGCAGATGGAGA
GTGTCCCTCCTTCCTCCCCTGGCCCTTGGCTCTGACACAGGATCTGGGGCCTGGAGCAGG
GTTAGCCTGATTGTTCAGGATTTCTTTTATTTTCATTTATGGGTTCCTATCTTCCTCCCT
ATTCATGGGAATCAGAGTAGAGTCTGGGGGAGGGTCCCCACCTTCTTGTACCCCACCTTC
CTCGGCTTGCTTTTGTGTTATGGTCTTTAATAAAAAGCTCTTTGGTCAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q63403_RAT

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q63403_RAT

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               402-1399, - strand, RNAz p=0.985158
               

               
               787-919, - strand, RNAz p=0.962422
               

               
               1013-1168, + strand, RNAz p=0.830752

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               402-1399, - strand, RNAz p=0.985158
               

               
               787-919, - strand, RNAz p=0.962422
               

               
               1013-1168, + strand, RNAz p=0.830752

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_003169, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_003169, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               148-281, gnl|bosTau2|chr18 (43701407-43701275)
               

               
               148-281, gnl|Hg17|chr19 (44655679-44655811)
               

               
               148-281, gnl|Mm7|chr7 (25251015-25250883)
               


               
               363-547, gnl|bosTau2|chr18 (43700639-43700456)
               

               
               363-547, gnl|Hg17|chr19 (44656421-44656603)
               

               
               363-547, gnl|Mm7|chr7 (25250361-25250179)
               


               
               707-919, gnl|bosTau2|chr18 (43699845-43699634)
               

               
               707-919, gnl|Hg17|chr19 (44656988-44657199)
               

               
               707-919, gnl|Mm7|chr7 (25249831-25249620)
               


               
               1013-1430, gnl|bosTau2|chr18 (43697768-43697345)
               

               
               1013-1430, gnl|Hg17|chr19 (44658734-44659150)
               

               
               1013-1430, gnl|Mm7|chr7 (25249170-25248796)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               148-281, gnl|bosTau2|chr18 (43701407-43701275)
               

               
               148-281, gnl|Hg17|chr19 (44655679-44655811)
               

               
               148-281, gnl|Mm7|chr7 (25251015-25250883)
               


               
               363-547, gnl|bosTau2|chr18 (43700639-43700456)
               

               
               363-547, gnl|Hg17|chr19 (44656421-44656603)
               

               
               363-547, gnl|Mm7|chr7 (25250361-25250179)
               


               
               707-919, gnl|bosTau2|chr18 (43699845-43699634)
               

               
               707-919, gnl|Hg17|chr19 (44656988-44657199)
               

               
               707-919, gnl|Mm7|chr7 (25249831-25249620)
               


               
               1013-1430, gnl|bosTau2|chr18 (43697768-43697345)
               

               
               1013-1430, gnl|Hg17|chr19 (44658734-44659150)
               

               
               1013-1430, gnl|Mm7|chr7 (25249170-25248796)

Expressed library(ies): 14 entry(ies)

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Expressed library(ies): 14 entry(ies)

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               eye (0.511509)
               

               
               cag (0.302389)
               

               
               fce (0.271592)
               

               
               med (0.232504)
               

               
               nms (0.213858)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

Expressed library(ies): 14 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.511509)
               

               
               cag (0.302389)
               

               
               fce (0.271592)
               

               
               med (0.232504)
               

               
               nms (0.213858)
               

               
               fbs (0.175346)
               

               
               nco (0.161734)
               

               
               hyp (0.142837)
               

               
               cov (0.132153)
               

               
               cly (0.120642)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ecc (0.115035)
               

               
               eje (0.0988338)

	402-1399, - strand, RNAz p=0.985158
	787-919, - strand, RNAz p=0.962422
	1013-1168, + strand, RNAz p=0.830752

	148-281, gnl\|bosTau2\|chr18 (43701407-43701275)
	148-281, gnl\|Hg17\|chr19 (44655679-44655811)
	148-281, gnl\|Mm7\|chr7 (25251015-25250883)

	363-547, gnl\|bosTau2\|chr18 (43700639-43700456)
	363-547, gnl\|Hg17\|chr19 (44656421-44656603)
	363-547, gnl\|Mm7\|chr7 (25250361-25250179)

	707-919, gnl\|bosTau2\|chr18 (43699845-43699634)
	707-919, gnl\|Hg17\|chr19 (44656988-44657199)
	707-919, gnl\|Mm7\|chr7 (25249831-25249620)

	1013-1430, gnl\|bosTau2\|chr18 (43697768-43697345)
	1013-1430, gnl\|Hg17\|chr19 (44658734-44659150)
	1013-1430, gnl\|Mm7\|chr7 (25249170-25248796)

	eye (0.511509)
	cag (0.302389)
	fce (0.271592)
	med (0.232504)
	nms (0.213858)
	fbs (0.175346)
	nco (0.161734)
	hyp (0.142837)
	cov (0.132153)
	cly (0.120642)
	eru (0.120048)
	pgl (0.118483)
	ecc (0.115035)
	eje (0.0988338)