Ss1.1-Pig4-TMW8046G17.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCACAGAGCAGATGCTAAGAAAAGACCAGAAGACCATCTCCAGACAAGGCATTAAGGTGG CTATTAGCGCAATATACATGGATTTGGAGGCCTTTCTGCAGAGGTCTGGCCTCATTGCAG ATCTCCATGCCTTCTGCCAGGCTCACAGCTATGATGCCCTGGTCGCCATGACTATCTTTT TCAACACTCACAATGAGCCAGTGCGACAGTTGGCTGTCTTCTGTCCCCACACAGCACTCC GAGTGATGATCTGTGGAGTCCTGGAAAGCTCCCATTCTCCATCCCTGAAGCTGGTCCCTG TTCCAAGCACCCACCCTAACCTCCAAGCCTATCTTCAAGGCAACACCCAGGTCTCTCGAA AGAAACTTCTACCTCTGCTCCAGGAAGCCCTGTCAGCATATTTTGACTCCATGAAGAGCC CTTCAGGACAGCCTGAAACAGCGGGTGTGTCTAGGGAGCAGGTGGACAAGGAGTTGGACA GGGCAGGTAACTCCCTGATTTCTGGACTGAGTCAAGATGAGGAGGAGCCTCCACTGCCCC CAACGCCCATGAACAGCCTGGTGGACGAGTGCCCTCTGGATCAGGGGCTGCCCAAGTTCT CAGCCGAGGTCATCTTTGAGAAATGTAGTCAGATCTCGCTGTCAGAATCTACCACTGCCT CCCTTTCCAAGAAATGACTGTTGGGAGGGGAGGGGAAAGTGAGAGACGTTGCTTGAATCA CCCCGAATGCATGTTCTGAGATGTTTCAGCAGTTCTGTCTTCATTGTTCTAGGATCTGGT ATACTGTTCTTTTAAACCTAGGAGGAGAAAGAAGTGAAGGAAAGCTGAGCTGGCTTTCTA CCTTTTCCCCACAATCTCTACCAATCAAACAGATTTTATTACTAAATTAACTCTTTAAAT CTGCACTGACTCTCTTCTATTTCATTTGCTAGGGTCATAATGAAATAACATACATATTTC CAGCAGAGTTGCACAAAAGAATGTATACTCCAAAAGTGCCCTCAGTCAGGCTCTTTAATG GAACCAGTATTTCTCATAGAACCAAACATTCATTGTCTCCGTATATCCATTTTTTCTCTT GTTAGTTCAAATATTTATTGAATACAATACCTACTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCACAGAGCAGATGCTAAGAAAAGACCAGAAGACCATCTCCAGACAAGGCATTAAGGTGG CTATTAGCGCAATATACATGGATTTGGAGGCCTTTCTGCAGAGGTCTGGCCTCATTGCAG ATCTCCATGCCTTCTGCCAGGCTCACAGCTATGATGCCCTGGTCGCCATGACTATCTTTT TCAACACTCACAATGAGCCAGTGCGACAGTTGGCTGTCTTCTGTCCCCACACAGCACTCC GAGTGATGATCTGTGGAGTCCTGGAAAGCTCCCATTCTCCATCCCTGAAGCTGGTCCCTG TTCCAAGCACCCACCCTAACCTCCAAGCCTATCTTCAAGGCAACACCCAGGTCTCTCGAA AGAAACTTCTACCTCTGCTCCAGGAAGCCCTGTCAGCATATTTTGACTCCATGAAGAGCC CTTCAGGACAGCCTGAAACAGCGGGTGTGTCTAGGGAGCAGGTGGACAAGGAGTTGGACA GGGCAGGTAACTCCCTGATTTCTGGACTGAGTCAAGATGAGGAGGAGCCTCCACTGCCCC CAACGCCCATGAACAGCCTGGTGGACGAGTGCCCTCTGGATCAGGGGCTGCCCAAGTTCT CAGCCGAGGTCATCTTTGAGAAATGTAGTCAGATCTCGCTGTCAGAATCTACCACTGCCT CCCTTTCCAAGAAATGACTGTTGGGAGGGGAGGGGAAAGTGAGAGACGTTGCTTGAATCA CCCCGAATGCATGTTCTGAGATGTTTCAGCAGTTCTGTCTTCATTGTTCTAGGATCTGGT ATACTGTTCTTTTAAACCTAGGAGGAGAAAGAAGTGAAGGAAAGCTGAGCTGGCTTTCTA CCTTTTCCCCACAATCTCTACCAATCAAACAGATTTTATTACTAAATTAACTCTTTAAAT CTGCACTGACTCTCTTCTATTTCATTTGCTAGGGTCATAATGAAATAACATACATATTTC CAGCAGAGTTGCACAAAAGAATGTATACTCCAAAAGTGCCCTCAGTCAGGCTCTTTAATG GAACCAGTATTTCTCATAGAACCAAACATTCATTGTCTCCGTATATCCATTTTTTCTCTT GTTAGTTCAAATATTTATTGAATACAATACCTACTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 287-406, - strand, RNAz p=0.50924 | |
| 791-897, - strand, RNAz p=0.591884 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 287-406, - strand, RNAz p=0.50924 | |
| 791-897, - strand, RNAz p=0.591884 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 88-246, gnl|bosTau2|chr3 (16535172-16535014) | |
| 88-246, gnl|canFam2|chr17 (63199230-63199402) | |
| 88-246, gnl|canFam2|chr17 (63199413-63199258) | |
| 88-246, gnl|danRer3|chr16 (34760819-34760970) | |
| 88-246, gnl|danRer3|chr16 (34760954-34760828) | |
| 88-246, gnl|dasNov1|scaffold_201012 (39361-39539) | |
| 88-246, gnl|dasNov1|scaffold_201012 (39550-39395) | |
| 88-246, gnl|echTel1|scaffold_164650 (8519-8352) | |
| 88-246, gnl|echTel1|scaffold_164650 (8341-8496) | |
| 88-246, gnl|fr1|chrUn (152600472-152600620) | |
| 88-246, gnl|hg17|chr1 (147814305-147814481) | |
| 88-246, gnl|Hg17|chr1 (147814333-147814491) | |
| 88-246, gnl|hg17|chr13 (25590108-25590261) | |
| 88-246, gnl|mm7|chr15 (71394685-71394530) | |
| 88-246, gnl|mm7|chr3 (95132166-95131990) | |
| 88-246, gnl|Mm7|chr3 (95132136-95131978) | |
| 88-246, gnl|monDom2|scaffold_44 (4244951-4245121) | |
| 88-246, gnl|monDom2|scaffold_44 (4245130-4244977) | |
| 88-246, gnl|oryCun1|scaffold_206144 (27280-27455) | |
| 88-246, gnl|oryCun1|scaffold_206144 (27466-27311) | |
| 88-246, gnl|panTro1|chr1 (129549854-129550030) | |
| 88-246, gnl|panTro1|chr14 (24766898-24767051) | |
| 88-246, gnl|rheMac2|chr1 (129442081-129442257) | |
| 88-246, gnl|rheMac2|chr1 (129442268-129442113) | |
| 88-246, gnl|rn3|chr2 (190131704-190131528) | |
| 88-246, gnl|rn3|chr2 (190131517-190131672) | |
| 88-246, gnl|tetNig1|chrUn_random (46900026-46899877) | |
| 88-246, gnl|tetNig1|chrUn_random (46899895-46900026) | |
| 248-955, gnl|bosTau2|chr3 (16533246-16532535) | |
| 248-955, gnl|Hg17|chr1 (147819354-147820054) | |
| 248-955, gnl|Mm7|chr3 (95129377-95128664) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 88-246, gnl|bosTau2|chr3 (16535172-16535014) | |
| 88-246, gnl|canFam2|chr17 (63199230-63199402) | |
| 88-246, gnl|canFam2|chr17 (63199413-63199258) | |
| 88-246, gnl|danRer3|chr16 (34760819-34760970) | |
| 88-246, gnl|danRer3|chr16 (34760954-34760828) | |
| 88-246, gnl|dasNov1|scaffold_201012 (39361-39539) | |
| 88-246, gnl|dasNov1|scaffold_201012 (39550-39395) | |
| 88-246, gnl|echTel1|scaffold_164650 (8519-8352) | |
| 88-246, gnl|echTel1|scaffold_164650 (8341-8496) | |
| 88-246, gnl|fr1|chrUn (152600472-152600620) | |
| 88-246, gnl|hg17|chr1 (147814305-147814481) | |
| 88-246, gnl|Hg17|chr1 (147814333-147814491) | |
| 88-246, gnl|hg17|chr13 (25590108-25590261) | |
| 88-246, gnl|mm7|chr15 (71394685-71394530) | |
| 88-246, gnl|mm7|chr3 (95132166-95131990) | |
| 88-246, gnl|Mm7|chr3 (95132136-95131978) | |
| 88-246, gnl|monDom2|scaffold_44 (4244951-4245121) | |
| 88-246, gnl|monDom2|scaffold_44 (4245130-4244977) | |
| 88-246, gnl|oryCun1|scaffold_206144 (27280-27455) | |
| 88-246, gnl|oryCun1|scaffold_206144 (27466-27311) | |
| 88-246, gnl|panTro1|chr1 (129549854-129550030) | |
| 88-246, gnl|panTro1|chr14 (24766898-24767051) | |
| 88-246, gnl|rheMac2|chr1 (129442081-129442257) | |
| 88-246, gnl|rheMac2|chr1 (129442268-129442113) | |
| 88-246, gnl|rn3|chr2 (190131704-190131528) | |
| 88-246, gnl|rn3|chr2 (190131517-190131672) | |
| 88-246, gnl|tetNig1|chrUn_random (46900026-46899877) | |
| 88-246, gnl|tetNig1|chrUn_random (46899895-46900026) | |
| 248-955, gnl|bosTau2|chr3 (16533246-16532535) | |
| 248-955, gnl|Hg17|chr1 (147819354-147820054) | |
| 248-955, gnl|Mm7|chr3 (95129377-95128664) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cty (0.10408) |