Non-Coding RNA Search

Ss1.1-Pig4-TMW8046G20.5

Sequence:


               
               ACGCAGATCGGGATAGTCCGCTTGGGGGCAGGAAGTGGCCCGTTCCTCCTTTCGGAGAGC
ATTTCCGGAGCGCCTACTGTGTGCTCCATTCTGGGGGTGAGGGCCGTTACGGAGAGGAGA
ATTAATGCAAATCTTGATGTTTGTTAGTCCGCTCCCTTCATCAGGACCTCCCGCCGGCGG
TTTGATTTTTCCCATTGCACGGAAAGGAAACTGAGGCCCCGTTAGTCCAGGGATTTAATC
CCAGCTGCACTATTTATTTTGATGGAAAATTTCAAAGAGCTACATGTCTCACACCTCTCT
CACTGGGAGCTGACTGCTTACAGCCTTCTGGGACCTCTGCACAGCAGGATGTTGTGACGG
GGGAGGCGGCGGTGGGGAGAAGCAGGCCACTCCAAGGTGGGTCTGAGGACAGACTCCACG
ATCTTCTGTTCTCTGACGACACATCCCTCATCATGCCTTCCCCAGCGAACCCCCGAGTCC
CTTCAAGTCCTAGAGACAAGCACGTGCCATTGTCTTCCACCCCTGGGAGGACACTACCCC
CCACCAGAGGGAAAGAGGCTTCCAGAGGCAAAGCTGCCCGCCTAACAGAAAGTATTAGAG
ATCTGACTCCTGGCTCTTTTCTTGTGCCAGGCACTCACACACACACGCCACTGTCATCTT
TCCAGTGCCACGAGGAGGCAGCACCTTCTCCATGTTAGGGAGGAGGTCACAGAGGCTTGG
AGGCTGACCCAAGCGTGTGGCTGGAAGAGCTGCTGTGGAGGAAGAAGAATCACACTCACC
AAGTTTTGTTCACAAAGGCCCCGGAACTGCTGGAATTTCTGGGACATCAGCAGCTGGGCA
CTGCCCACAGCACTGAGGACTTTTCCTAAGACTGAGAAAGAGAAGATAGAAAAAGACTGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ACGCAGATCGGGATAGTCCGCTTGGGGGCAGGAAGTGGCCCGTTCCTCCTTTCGGAGAGC
ATTTCCGGAGCGCCTACTGTGTGCTCCATTCTGGGGGTGAGGGCCGTTACGGAGAGGAGA
ATTAATGCAAATCTTGATGTTTGTTAGTCCGCTCCCTTCATCAGGACCTCCCGCCGGCGG
TTTGATTTTTCCCATTGCACGGAAAGGAAACTGAGGCCCCGTTAGTCCAGGGATTTAATC
CCAGCTGCACTATTTATTTTGATGGAAAATTTCAAAGAGCTACATGTCTCACACCTCTCT
CACTGGGAGCTGACTGCTTACAGCCTTCTGGGACCTCTGCACAGCAGGATGTTGTGACGG
GGGAGGCGGCGGTGGGGAGAAGCAGGCCACTCCAAGGTGGGTCTGAGGACAGACTCCACG
ATCTTCTGTTCTCTGACGACACATCCCTCATCATGCCTTCCCCAGCGAACCCCCGAGTCC
CTTCAAGTCCTAGAGACAAGCACGTGCCATTGTCTTCCACCCCTGGGAGGACACTACCCC
CCACCAGAGGGAAAGAGGCTTCCAGAGGCAAAGCTGCCCGCCTAACAGAAAGTATTAGAG
ATCTGACTCCTGGCTCTTTTCTTGTGCCAGGCACTCACACACACACGCCACTGTCATCTT
TCCAGTGCCACGAGGAGGCAGCACCTTCTCCATGTTAGGGAGGAGGTCACAGAGGCTTGG
AGGCTGACCCAAGCGTGTGGCTGGAAGAGCTGCTGTGGAGGAAGAAGAATCACACTCACC
AAGTTTTGTTCACAAAGGCCCCGGAACTGCTGGAATTTCTGGGACATCAGCAGCTGGGCA
CTGCCCACAGCACTGAGGACTTTTCCTAAGACTGAGAAAGAGAAGATAGAAAAAGACTGA

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

Help | Less info


               
               1-245, gnl|bosTau2|chr13 (44709985-44709742)
               

               
               1-245, gnl|Hg17|chr20 (34635172-34634940)
               

               
               1-245, gnl|Mm7|chr2 (156580746-156580532)
               


               
               638-856, gnl|bosTau2|chr13 (44666930-44666726)
               

               
               638-856, gnl|Hg17|chr20 (34586313-34586088)
               

               
               638-856, gnl|Mm7|chr2 (156501979-156501762)

Aligned organism(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-245, gnl|bosTau2|chr13 (44709985-44709742)
               

               
               1-245, gnl|Hg17|chr20 (34635172-34634940)
               

               
               1-245, gnl|Mm7|chr2 (156580746-156580532)
               


               
               638-856, gnl|bosTau2|chr13 (44666930-44666726)
               

               
               638-856, gnl|Hg17|chr20 (34586313-34586088)
               

               
               638-856, gnl|Mm7|chr2 (156501979-156501762)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               ova (0.129132)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ova (0.129132)

	1-245, gnl\|bosTau2\|chr13 (44709985-44709742)
	1-245, gnl\|Hg17\|chr20 (34635172-34634940)
	1-245, gnl\|Mm7\|chr2 (156580746-156580532)

	638-856, gnl\|bosTau2\|chr13 (44666930-44666726)
	638-856, gnl\|Hg17\|chr20 (34586313-34586088)
	638-856, gnl\|Mm7\|chr2 (156501979-156501762)