Ss1.1-Pig4-TMW8046H06.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCCAGACGAGCCCCAGTGCTACTTCTGCTTTTGTGTCTATCATGCGAGGCTGTGACAACA TGTGCAGCTACTGCATTGTTCCTTTCACACGTGGCCGGGAGAGGAGTCGGCCTGTTGCCT CCATTCTAGAGGAAGTGAGGAAACTTTCTGAGCAGGGACTAAAAGAAGTGACGCTCCTTG GTCAGAATGTTAATAGTTTTCGGGACACTTCAGAGGTCCAGTTCAACAATGCAGTGTCCA CCAACCTCAGCCGTGGCTTTTCCTCCAACTATAAAACCAAGCAAGGGGGTCTTCGTTTTG CTCACCTTCTGGACCAGGTCTCCCGAATAGATCCTGAAATGAGGATCCGTTTCACCTCTC CTCACCCCAAGGACTTTCCTGATGAGGTTCTGCAGCTGATTCATGACAGAGACAACATCT GTAAACAGATCCACCTACCAGCCCAGAGTGGAAGCAGCCGTGTATTGGAAGCCATGCGGA GGGGATATTCAAGAGAAGCTTATGTGGAATTAGTTCATCATATCAGAGAGTCTATCCCAG GTGTGAGCCTCAGCAGTGATTTCATTGCTGGCTTTTGTGGTGAGACGGAAGAAGATCACC TCCAGACAGTGTCTTTGCTTCAGGAAGTTCAGTACAACATGGGCTTCCTCTTTGCCTATA GCATGAGGCAGAAGACACGTGCATATCACAGACTAAAGGATGATATCCCAGAAGAGGTAA AATTAAGGCGTTTGGAGGAACTTATTACTGTCTTCCGAGAAGAAGCAACAAAAGCCAACA AGACCTTTGTGGGTTGTACCCAGCTGGTGCTGGTGGAGGGGTTCAGTAAACGCTCTTCCA CTGACCTGTGTGGCCGGAATGATGGAAACCTTAAGGTGATCTTTCCTGATGTAGAGCTGG AGGATGTCACCAACTCTGGGCTTAAGGTCCGAGCTCAGCCTGGCGACTATGTGCTGGTGA AGATCACCTCTGCCAGCTCTCAGACACTTAAAGGACATGTTCTCCGTAGGACCAGTCTGA AGGACTCTGCAGCATATAGCTGACCTGACTAGTTGCCTCAGACTTTCCCAACGGGAAGAG ACTGGTCACTAATGAAAGGTAATGAAACTTTGGAGACAAGCTGCAAGTGGTGAAGCAACT TTCTGTGAATGGAAAATGCGTTTCTTTGCTGCTTTGTAAACAGCTTTTACATTCATTAAA TTTACCTTAACTAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCCAGACGAGCCCCAGTGCTACTTCTGCTTTTGTGTCTATCATGCGAGGCTGTGACAACA TGTGCAGCTACTGCATTGTTCCTTTCACACGTGGCCGGGAGAGGAGTCGGCCTGTTGCCT CCATTCTAGAGGAAGTGAGGAAACTTTCTGAGCAGGGACTAAAAGAAGTGACGCTCCTTG GTCAGAATGTTAATAGTTTTCGGGACACTTCAGAGGTCCAGTTCAACAATGCAGTGTCCA CCAACCTCAGCCGTGGCTTTTCCTCCAACTATAAAACCAAGCAAGGGGGTCTTCGTTTTG CTCACCTTCTGGACCAGGTCTCCCGAATAGATCCTGAAATGAGGATCCGTTTCACCTCTC CTCACCCCAAGGACTTTCCTGATGAGGTTCTGCAGCTGATTCATGACAGAGACAACATCT GTAAACAGATCCACCTACCAGCCCAGAGTGGAAGCAGCCGTGTATTGGAAGCCATGCGGA GGGGATATTCAAGAGAAGCTTATGTGGAATTAGTTCATCATATCAGAGAGTCTATCCCAG GTGTGAGCCTCAGCAGTGATTTCATTGCTGGCTTTTGTGGTGAGACGGAAGAAGATCACC TCCAGACAGTGTCTTTGCTTCAGGAAGTTCAGTACAACATGGGCTTCCTCTTTGCCTATA GCATGAGGCAGAAGACACGTGCATATCACAGACTAAAGGATGATATCCCAGAAGAGGTAA AATTAAGGCGTTTGGAGGAACTTATTACTGTCTTCCGAGAAGAAGCAACAAAAGCCAACA AGACCTTTGTGGGTTGTACCCAGCTGGTGCTGGTGGAGGGGTTCAGTAAACGCTCTTCCA CTGACCTGTGTGGCCGGAATGATGGAAACCTTAAGGTGATCTTTCCTGATGTAGAGCTGG AGGATGTCACCAACTCTGGGCTTAAGGTCCGAGCTCAGCCTGGCGACTATGTGCTGGTGA AGATCACCTCTGCCAGCTCTCAGACACTTAAAGGACATGTTCTCCGTAGGACCAGTCTGA AGGACTCTGCAGCATATAGCTGACCTGACTAGTTGCCTCAGACTTTCCCAACGGGAAGAG ACTGGTCACTAATGAAAGGTAATGAAACTTTGGAGACAAGCTGCAAGTGGTGAAGCAACT TTCTGTGAATGGAAAATGCGTTTCTTTGCTGCTTTGTAAACAGCTTTTACATTCATTAAA TTTACCTTAACTAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | More info |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
| 271-388, - strand, RNAz p=0.967534 | |
| 709-826, + strand, RNAz p=0.65648 | |
| 928-1047, - strand, RNAz p=0.994743 |
| Predicted RNA structure(s): 3 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 271-388, - strand, RNAz p=0.967534 | |
| 709-826, + strand, RNAz p=0.65648 | |
| 928-1047, - strand, RNAz p=0.994743 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of AY462284, + |
| Aligned organism(s): 27 entry(ies) | More info |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
| 153-388, gnl|bosTau2|chr13 (43587131-43587366) | |
| 153-388, gnl|Hg17|chr20 (31431161-31430926) | |
| 153-388, gnl|Mm7|chr2 (154094281-154094046) | |
| 670-826, gnl|bosTau2|chr13 (43598620-43598776) | |
| 670-826, gnl|canFam2|chr24 (25571347-25571516) | |
| 670-826, gnl|danRer3|chr11 (15620996-15620823) | |
| 670-826, gnl|dasNov1|scaffold_23550 (44811-44982) | |
| 670-826, gnl|echTel1|scaffold_270000 (2876-2702) | |
| 670-826, gnl|fr1|chrUn (163469049-163468876) | |
| 670-826, gnl|galGal2|chr20 (9881960-9882127) | |
| 670-826, gnl|hg17|chr20 (31418320-31418496) | |
| 670-826, gnl|Hg17|chr20 (31418477-31418321) | |
| 670-826, gnl|loxAfr1|scaffold_92534 (5641-5815) | |
| 670-826, gnl|mm7|chr2 (154086718-154086884) | |
| 670-826, gnl|Mm7|chr2 (154086875-154086719) | |
| 670-826, gnl|monDom2|scaffold_6 (830809-830989) | |
| 670-826, gnl|oryCun1|scaffold_207284 (78833-79002) | |
| 670-826, gnl|panTro1|chr21 (33396537-33396719) | |
| 670-826, gnl|rheMac2|chr10 (31250798-31250629) | |
| 670-826, gnl|rn3|chr3 (144719603-144719769) | |
| 670-826, gnl|tetNig1|chr11 (9571286-9571130) | |
| 670-826, gnl|xenTro1|scaffold_293 (1014246-1014079) | |
| 928-1222, gnl|bosTau2|chr24 (44010202-44009902) | |
| 928-1222, gnl|Hg17|chr18 (56496022-56495737) | |
| 961-1213, gnl|bosTau2|chr13 (43609572-43609830) | |
| 961-1213, gnl|Hg17|chr20 (31410592-31410313) | |
| 961-1213, gnl|Mm7|chr2 (154076477-154076243) |
| Aligned organism(s): 27 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 153-388, gnl|bosTau2|chr13 (43587131-43587366) | |
| 153-388, gnl|Hg17|chr20 (31431161-31430926) | |
| 153-388, gnl|Mm7|chr2 (154094281-154094046) | |
| 670-826, gnl|bosTau2|chr13 (43598620-43598776) | |
| 670-826, gnl|canFam2|chr24 (25571347-25571516) | |
| 670-826, gnl|danRer3|chr11 (15620996-15620823) | |
| 670-826, gnl|dasNov1|scaffold_23550 (44811-44982) | |
| 670-826, gnl|echTel1|scaffold_270000 (2876-2702) | |
| 670-826, gnl|fr1|chrUn (163469049-163468876) | |
| 670-826, gnl|galGal2|chr20 (9881960-9882127) | |
| 670-826, gnl|hg17|chr20 (31418320-31418496) | |
| 670-826, gnl|Hg17|chr20 (31418477-31418321) | |
| 670-826, gnl|loxAfr1|scaffold_92534 (5641-5815) | |
| 670-826, gnl|mm7|chr2 (154086718-154086884) | |
| 670-826, gnl|Mm7|chr2 (154086875-154086719) | |
| 670-826, gnl|monDom2|scaffold_6 (830809-830989) | |
| 670-826, gnl|oryCun1|scaffold_207284 (78833-79002) | |
| 670-826, gnl|panTro1|chr21 (33396537-33396719) | |
| 670-826, gnl|rheMac2|chr10 (31250798-31250629) | |
| 670-826, gnl|rn3|chr3 (144719603-144719769) | |
| 670-826, gnl|tetNig1|chr11 (9571286-9571130) | |
| 670-826, gnl|xenTro1|scaffold_293 (1014246-1014079) | |
| 928-1222, gnl|bosTau2|chr24 (44010202-44009902) | |
| 928-1222, gnl|Hg17|chr18 (56496022-56495737) | |
| 961-1213, gnl|bosTau2|chr13 (43609572-43609830) | |
| 961-1213, gnl|Hg17|chr20 (31410592-31410313) | |
| 961-1213, gnl|Mm7|chr2 (154076477-154076243) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| tes (0.207814) | |
| hea (0.204499) | |
| che (0.136314) | |
| ute (0.132784) | |
| eep (0.122564) | |
| ldo (0.0970026) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tes (0.207814) | |
| hea (0.204499) | |
| che (0.136314) | |
| ute (0.132784) | |
| eep (0.122564) | |
| ldo (0.0970026) |