Non-Coding RNA Search

Ss1.1-Pig4-TMW8046H15.3

Sequence:


               
               AGGGAACCCTCAGCCTGCCAGTATCTGCCGGGCCTGACCGCTGGGGCTGGATGGACACAA
GACGCATTGACAGGCCCTGGCGGCCACCAGTAGGTGGGTGGGGGCAGTGCCCATGGGGGT
GTGAGAATGACTGCATCAGGCACTTCTCAACAACAGCCTGCTGTTAGCTGGGCCTGGCAG
GGCAGAAGAGTGGGAGCGTCATTCCGGCATTCCTCTCAGAAAGGGGGAGACACGTTTCCA
AGCAGCATGTGTAACGGAATTGGATAAAGCAGGAGGCTCACAGGTGGCTTCTGAATGAAG
GACAGACTCTAGGGGCTCCGTGGTTCCCCAGAGCCATCTGTGGGGCAGATACCAGCCCCC
CACCTCCACCCCGGCCGCCTCCACTTTGGCCCATTTTCCTGCTTGTCCCCAGGACAGAGC
CCAGAGTGATGCTGCTTCTCAGCCTGTTGCAGCTGCTCTTTAGTCAGGAAGGCCTTGCAG
AGTCCTGCACTGCTGCTCCGTTGTCCAAGATGCACCCCCACCGGCTCTGAAAGCAGGTCT
GGGCCAGTGCTGCTCACAGTTCCCTTCTGCCTTCAGGGTCTATGACCCTAAGGTGAATGT
GCCCTGAGAGGTGGCGTTCGTGTGCCTGGGTCTCAGTAAATGTTACCGAAATGAATGAAT
AGCAGCTGCTAGTGTTCACCTCGTTTGGTCCTCAGTTGAGGGCCTGCCACTCCATTTAGG
GTGCCGTCTATGGAGGGGCAGTGATTCCTCCTTGAAATGATGTCAGGATTAGACAGGCAG
AAACAGCAGATGATGGTGAAACCGAAAGGGCATTCCATGTGGGTCCAGCCACTAGTTATA
TGGGGACACAGGCTGGCATGGTCTTAGGTTTTCTTGAATCTAGAAATTGGATTTTTAAGT
TGAGTTTTCTGTTTTTTAACTATTGCTGATTAATTCAGAAACTTTTTTAAAGCTTGGGTA
TTGGCCAAACAAAATGCTTTACATGAGCTTTTTGGTCCGGACCTATGATTTTGCCTTCTC
TTGAGATTTCTTAGTAGAAACTGCTAGGTTTTCCCCATGATATCCCTAAGTAGGCAGGTG
GACTTGGAAACTAAATGTCCACAATAGACTTAAGACATTAAGAATTCTAAACAGTGGAAT
ACTATACAGCTGTATTCAAGGATGAAGACACTTTGAGCACTGCTTTTGAACAAACTTCAA
GATACAGTACATTGAGAAGCAAGGACAATGTCTAATAAGCTCGTAATTTGTGTGCAAACA
ATGAATGTGGTTCCCTCAGAATAGAAATTTGCATGTTTGGGACACAAGGGTGCGAGGGGA
CATGTTGCTGTTATAGTGCATATTTTTAAATAAAAACTTAAAAAAGCAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGGGAACCCTCAGCCTGCCAGTATCTGCCGGGCCTGACCGCTGGGGCTGGATGGACACAA
GACGCATTGACAGGCCCTGGCGGCCACCAGTAGGTGGGTGGGGGCAGTGCCCATGGGGGT
GTGAGAATGACTGCATCAGGCACTTCTCAACAACAGCCTGCTGTTAGCTGGGCCTGGCAG
GGCAGAAGAGTGGGAGCGTCATTCCGGCATTCCTCTCAGAAAGGGGGAGACACGTTTCCA
AGCAGCATGTGTAACGGAATTGGATAAAGCAGGAGGCTCACAGGTGGCTTCTGAATGAAG
GACAGACTCTAGGGGCTCCGTGGTTCCCCAGAGCCATCTGTGGGGCAGATACCAGCCCCC
CACCTCCACCCCGGCCGCCTCCACTTTGGCCCATTTTCCTGCTTGTCCCCAGGACAGAGC
CCAGAGTGATGCTGCTTCTCAGCCTGTTGCAGCTGCTCTTTAGTCAGGAAGGCCTTGCAG
AGTCCTGCACTGCTGCTCCGTTGTCCAAGATGCACCCCCACCGGCTCTGAAAGCAGGTCT
GGGCCAGTGCTGCTCACAGTTCCCTTCTGCCTTCAGGGTCTATGACCCTAAGGTGAATGT
GCCCTGAGAGGTGGCGTTCGTGTGCCTGGGTCTCAGTAAATGTTACCGAAATGAATGAAT
AGCAGCTGCTAGTGTTCACCTCGTTTGGTCCTCAGTTGAGGGCCTGCCACTCCATTTAGG
GTGCCGTCTATGGAGGGGCAGTGATTCCTCCTTGAAATGATGTCAGGATTAGACAGGCAG
AAACAGCAGATGATGGTGAAACCGAAAGGGCATTCCATGTGGGTCCAGCCACTAGTTATA
TGGGGACACAGGCTGGCATGGTCTTAGGTTTTCTTGAATCTAGAAATTGGATTTTTAAGT
TGAGTTTTCTGTTTTTTAACTATTGCTGATTAATTCAGAAACTTTTTTAAAGCTTGGGTA
TTGGCCAAACAAAATGCTTTACATGAGCTTTTTGGTCCGGACCTATGATTTTGCCTTCTC
TTGAGATTTCTTAGTAGAAACTGCTAGGTTTTCCCCATGATATCCCTAAGTAGGCAGGTG
GACTTGGAAACTAAATGTCCACAATAGACTTAAGACATTAAGAATTCTAAACAGTGGAAT
ACTATACAGCTGTATTCAAGGATGAAGACACTTTGAGCACTGCTTTTGAACAAACTTCAA
GATACAGTACATTGAGAAGCAAGGACAATGTCTAATAAGCTCGTAATTTGTGTGCAAACA
ATGAATGTGGTTCCCTCAGAATAGAAATTTGCATGTTTGGGACACAAGGGTGCGAGGGGA
CATGTTGCTGTTATAGTGCATATTTTTAAATAAAAACTTAAAAAAGCAAAAAAAAAAAAA
AAAAAAAAAAAA

Aligned organism(s): 7 entry(ies)

More info

Aligned organism(s): 7 entry(ies)

Help | Less info


               
               1-488, gnl|bosTau2|chr13 (42703444-42703916)
               

               
               1-488, gnl|Hg17|chr20 (29997102-29996626)
               

               
               1-488, gnl|Mm7|chr2 (152750358-152749919)
               


               
               509-767, gnl|bosTau2|chr13 (42703962-42704221)
               

               
               509-767, gnl|Hg17|chr20 (29996576-29996290)
               

               
               509-767, gnl|Mm7|chr2 (152749875-152749646)
               


               
               804-1365, gnl|bosTau2|chr13 (42704230-42704798)

Aligned organism(s): 7 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-488, gnl|bosTau2|chr13 (42703444-42703916)
               

               
               1-488, gnl|Hg17|chr20 (29997102-29996626)
               

               
               1-488, gnl|Mm7|chr2 (152750358-152749919)
               


               
               509-767, gnl|bosTau2|chr13 (42703962-42704221)
               

               
               509-767, gnl|Hg17|chr20 (29996576-29996290)
               

               
               509-767, gnl|Mm7|chr2 (152749875-152749646)
               


               
               804-1365, gnl|bosTau2|chr13 (42704230-42704798)

Expressed library(ies): 27 entry(ies)

More info

Expressed library(ies): 27 entry(ies)

Help | Less info


               
               spc (0.906927)
               

               
               ste (0.540833)
               

               
               cbe (0.478469)
               

               
               pla (0.401016)
               

               
               sug (0.381874)
               

               
               rec (0.346141)
               

               
               mga (0.32041)
               

               
               spl (0.286369)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

Expressed library(ies): 27 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               spc (0.906927)
               

               
               ste (0.540833)
               

               
               cbe (0.478469)
               

               
               pla (0.401016)
               

               
               sug (0.381874)
               

               
               rec (0.346141)
               

               
               mga (0.32041)
               

               
               spl (0.286369)
               

               
               tra (0.246184)
               

               
               mgp (0.230681)
               

               
               ece (0.229305)
               

               
               aor (0.195274)
               

               
               sag (0.182715)
               

               
               gul (0.177588)
               

               
               cki (0.165235)
               

               
               csp (0.161186)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               lin (0.145603)
               

               
               pty (0.142714)
               

               
               csk (0.140746)
               

               
               kid (0.129735)
               

               
               ova (0.129132)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               clu (0.119646)
               

               
               cty (0.10408)

	1-488, gnl\|bosTau2\|chr13 (42703444-42703916)
	1-488, gnl\|Hg17\|chr20 (29997102-29996626)
	1-488, gnl\|Mm7\|chr2 (152750358-152749919)

	509-767, gnl\|bosTau2\|chr13 (42703962-42704221)
	509-767, gnl\|Hg17\|chr20 (29996576-29996290)
	509-767, gnl\|Mm7\|chr2 (152749875-152749646)

	804-1365, gnl\|bosTau2\|chr13 (42704230-42704798)

	spc (0.906927)
	ste (0.540833)
	cbe (0.478469)
	pla (0.401016)
	sug (0.381874)
	rec (0.346141)
	mga (0.32041)
	spl (0.286369)
	tra (0.246184)
	mgp (0.230681)
	ece (0.229305)
	aor (0.195274)
	sag (0.182715)
	gul (0.177588)
	cki (0.165235)
	csp (0.161186)
	isp (0.150376)
	liv (0.146284)
	lin (0.145603)
	pty (0.142714)
	csk (0.140746)
	kid (0.129735)
	ova (0.129132)
	thg (0.126791)
	bla (0.124347)
	clu (0.119646)
	cty (0.10408)