Non-Coding RNA Search

Ss1.1-Pig4-TMW8046I22.5

Sequence:


               
               TGGCTCTATTTTATCTGCAAGAGAACGATGCAAACCACCTAGGAGATTATGAGGCCGGAC
AAATCACCTTCATGGAGAAAGGTAAAGATACTTCTTTCATCCCACAAAAAGGAAGAAGGA
TAGGACAGGTCCACTAGAAAACCCACCCCTTAAACAAACATAAAATGTAAAAGATTGGAA
AATTTAAAGGAATGTCCTATCTGGAAACTGGACTTTTTGTCTTTGAAATTGTGTTGGCAT
CAAGCCTCATACACAGTGATCTCAATAACTATTTGTTGGGACAAATGAATGAAAGAAGGA
AAAAATATGTAACCCCAGCACCCAGAAGGTAGTTTCTCTTGCTTCACACAGTGCTTCTTT
TACTTGCTCTCATGCCGGTCCCTGAGAATGACTAGCACTGATATGAAACCCCTTGGATAT
ACTTTCTTAGTGGAAGTCCACATAGATCTGCGTATGCCCTACAGGGAGTGCTGAGGTCAG
AGTAAATGGCTATAAAGGGCCCTTTCAAAATGAACATTTCCCTCCTAGAGGAAGGTTGAT
TCTCTCATCATGGAGAAATCAAACTAATTTTATAATTTCACTTCACATATTTTTCCAGTG
GAGGTTAAAAAAAAAAAACAAAAAAAAAACAAAGCCCAATTTGTTGCTTAAAAAAGTTCC
TCTAACACTGTTATGAAGTCTGGTTTAAGTTAAAAAGCTTGTTTTAACTTTTTTGGCTGT
CATATACCAAACACTATTTCTCTTAAAGACTTCTTCATTTTAAATCTGCCACTATACGAG
TTTGTTGCCAGTGTGTGAGTTTCTAACACATCCCATTTTTCCTGTTCCCAAGGAAGGTGA
CTTGGCTTTAGCTTGGCTCCAAGTGTTTACAGTGTCCTGTTCCATGGTAGGTTTAGAAGA
GGGATCTAAGACTTGAATGAAACTGAAGCGATCTCATAGAAAATAAAAATTGTAGGATGA
GGATGGGCCTATAAATATGTGAGTTTCAGATTTTTTTGTAAATATCAAACTAATTGGTTT
TTGCTTTACCAATAAAATGGTCTTAGCAGAATAAAATTTAAATTTGGGAATTATAGAGCT
CAATATTAAACTTAGCCATGATTCAAGAGAAATGCACTTCTTTACCTAAGATGCATTAAT
TGTAGAATTGTATTGGTTGGGTTTTTAAGAACTATTTTCCAAATTCTTGACATGGTTTAA
AGGGTGCAGTGCTGAATAGCCAATCTCGATTTACATGAGATTGGATGGCAAAGTGATCTG
TGACTTTGTGGGCGGGACATCTGCCAAATGGAGTACACAGGATCCAACAGGATTTCTTAG
ACGAGATTGGGCGAGTTCAGGGTGGTATGTCCTAGACCAACAGGGTTTCTTAGAAAGGGC
ATTATTGTCCAGTGACGGAAGCAGAAGGACCCTGGACCTTTAGAAGCAGCTACATAAAAG
CTGCATAAAAACTCTTACCTGGGGATTTCCTGCTGTGGTGCAGTTGGTTAAGGATCTGGC
ATTGTCAAAGCTATGGCATAGGTCCCAGCTGTGGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGCTCTATTTTATCTGCAAGAGAACGATGCAAACCACCTAGGAGATTATGAGGCCGGAC
AAATCACCTTCATGGAGAAAGGTAAAGATACTTCTTTCATCCCACAAAAAGGAAGAAGGA
TAGGACAGGTCCACTAGAAAACCCACCCCTTAAACAAACATAAAATGTAAAAGATTGGAA
AATTTAAAGGAATGTCCTATCTGGAAACTGGACTTTTTGTCTTTGAAATTGTGTTGGCAT
CAAGCCTCATACACAGTGATCTCAATAACTATTTGTTGGGACAAATGAATGAAAGAAGGA
AAAAATATGTAACCCCAGCACCCAGAAGGTAGTTTCTCTTGCTTCACACAGTGCTTCTTT
TACTTGCTCTCATGCCGGTCCCTGAGAATGACTAGCACTGATATGAAACCCCTTGGATAT
ACTTTCTTAGTGGAAGTCCACATAGATCTGCGTATGCCCTACAGGGAGTGCTGAGGTCAG
AGTAAATGGCTATAAAGGGCCCTTTCAAAATGAACATTTCCCTCCTAGAGGAAGGTTGAT
TCTCTCATCATGGAGAAATCAAACTAATTTTATAATTTCACTTCACATATTTTTCCAGTG
GAGGTTAAAAAAAAAAAACAAAAAAAAAACAAAGCCCAATTTGTTGCTTAAAAAAGTTCC
TCTAACACTGTTATGAAGTCTGGTTTAAGTTAAAAAGCTTGTTTTAACTTTTTTGGCTGT
CATATACCAAACACTATTTCTCTTAAAGACTTCTTCATTTTAAATCTGCCACTATACGAG
TTTGTTGCCAGTGTGTGAGTTTCTAACACATCCCATTTTTCCTGTTCCCAAGGAAGGTGA
CTTGGCTTTAGCTTGGCTCCAAGTGTTTACAGTGTCCTGTTCCATGGTAGGTTTAGAAGA
GGGATCTAAGACTTGAATGAAACTGAAGCGATCTCATAGAAAATAAAAATTGTAGGATGA
GGATGGGCCTATAAATATGTGAGTTTCAGATTTTTTTGTAAATATCAAACTAATTGGTTT
TTGCTTTACCAATAAAATGGTCTTAGCAGAATAAAATTTAAATTTGGGAATTATAGAGCT
CAATATTAAACTTAGCCATGATTCAAGAGAAATGCACTTCTTTACCTAAGATGCATTAAT
TGTAGAATTGTATTGGTTGGGTTTTTAAGAACTATTTTCCAAATTCTTGACATGGTTTAA
AGGGTGCAGTGCTGAATAGCCAATCTCGATTTACATGAGATTGGATGGCAAAGTGATCTG
TGACTTTGTGGGCGGGACATCTGCCAAATGGAGTACACAGGATCCAACAGGATTTCTTAG
ACGAGATTGGGCGAGTTCAGGGTGGTATGTCCTAGACCAACAGGGTTTCTTAGAAAGGGC
ATTATTGTCCAGTGACGGAAGCAGAAGGACCCTGGACCTTTAGAAGCAGCTACATAAAAG
CTGCATAAAAACTCTTACCTGGGGATTTCCTGCTGTGGTGCAGTTGGTTAAGGATCTGGC
ATTGTCAAAGCTATGGCATAGGTCCCAGCTGTGGCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1204-1321, + strand, RNAz p=0.805405

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1204-1321, + strand, RNAz p=0.805405

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               47-459, gnl|bosTau2|chr5 (1957526-1957101)
               

               
               47-459, gnl|Hg17|chr12 (74707223-74706816)
               

               
               47-459, gnl|Mm7|chr10 (110972738-110973128)
               


               
               954-1321, gnl|bosTau2|chr5 (1956955-1956581)
               

               
               954-1321, gnl|Hg17|chr12 (74706307-74705927)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               47-459, gnl|bosTau2|chr5 (1957526-1957101)
               

               
               47-459, gnl|Hg17|chr12 (74707223-74706816)
               

               
               47-459, gnl|Mm7|chr10 (110972738-110973128)
               


               
               954-1321, gnl|bosTau2|chr5 (1956955-1956581)
               

               
               954-1321, gnl|Hg17|chr12 (74706307-74705927)

Expressed library(ies): 3 entry(ies)

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Expressed library(ies): 3 entry(ies)

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               ece (0.229305)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)

Expressed library(ies): 3 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               ece (0.229305)
               

               
               rec (0.17307)
               

               
               mcp (0.170648)

	47-459, gnl\|bosTau2\|chr5 (1957526-1957101)
	47-459, gnl\|Hg17\|chr12 (74707223-74706816)
	47-459, gnl\|Mm7\|chr10 (110972738-110973128)

	954-1321, gnl\|bosTau2\|chr5 (1956955-1956581)
	954-1321, gnl\|Hg17\|chr12 (74706307-74705927)