Ss1.1-Pig4-TMW8046I24.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CACATCCATCCGATCTTTTCCTGGTGTGGCTCCACGGATTCCAAGGATATCGTGATGCCT ACCTATGACCTGACTGACTCTGTTCTCGAAACCATGGGCCGAGTAAGTCTGGATATGCTG TCCGTGCAAGCCAACACGGGCCCTCCCTGGGAAAGCAAAAACTCCACCGCTGTCTGGAGG GGGCGAGACAGCAGAAAAGAGAGACTCGAGCTGGTGAAACTCAGCCGAAAACACCCAGAG CTCATCGATGCTGCTTTCACCAACTTTTTCTTCTTTAAACACGACGAGAGCCTGTATGGT CCCATCGTGAAACACATTTCATTTTTTGATTTCTTCAAGCATAAGTACCAGATAAACGTC GATGGCACGGTTGCAGCCTACCGCCTACCCTACCTGCTGGTTGGTGACAGTGTGGTGCTA AAGCAGGACTCCATCTACTATGAACACTTTTATAATGAGCTGCAGCCCTGGAAACACTAC ATTCCTGTTCGAAGCAACCTGAGCGACCTCCTGGAAAAACTGAAGTGGGCAAAAGATCAC GATGAAGAGGCAAAGAAGATAGCAAAAACAGGACAAGAATTTGCGAGAAATAATCTCATG GGTGACGACATATTCTGTTATTATTTTAAACTTTTCCAGGAGTATGCCAGTTTACAAGTG AGTGAGCCCCAGATCCGAGAGGGCATGGAGCGGGTGCAGCCGCAGACCGAGGACGACCTC TTCCCTTGCGCATGCCACAGGAAGAAGACCAAAGATGAACTCTGATGTGCAAAATGCCTT CCCTTCAAATAATGGTGCTCTGACAACTCGTCTTCACTGAAAAGAAGCCTGTCTTTTAAA TACCAAGTCCAAGGACAATATAAAATCTGCTCTGTGATTATTCTGGATTACGAAGATATG TTTCTTCTTATTCTGCAGTATTCCCATGACTGTCCTTTGACGCACATTTTTAGAATTTTA TAATAAAATCACTTTTATTTTAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CACATCCATCCGATCTTTTCCTGGTGTGGCTCCACGGATTCCAAGGATATCGTGATGCCT ACCTATGACCTGACTGACTCTGTTCTCGAAACCATGGGCCGAGTAAGTCTGGATATGCTG TCCGTGCAAGCCAACACGGGCCCTCCCTGGGAAAGCAAAAACTCCACCGCTGTCTGGAGG GGGCGAGACAGCAGAAAAGAGAGACTCGAGCTGGTGAAACTCAGCCGAAAACACCCAGAG CTCATCGATGCTGCTTTCACCAACTTTTTCTTCTTTAAACACGACGAGAGCCTGTATGGT CCCATCGTGAAACACATTTCATTTTTTGATTTCTTCAAGCATAAGTACCAGATAAACGTC GATGGCACGGTTGCAGCCTACCGCCTACCCTACCTGCTGGTTGGTGACAGTGTGGTGCTA AAGCAGGACTCCATCTACTATGAACACTTTTATAATGAGCTGCAGCCCTGGAAACACTAC ATTCCTGTTCGAAGCAACCTGAGCGACCTCCTGGAAAAACTGAAGTGGGCAAAAGATCAC GATGAAGAGGCAAAGAAGATAGCAAAAACAGGACAAGAATTTGCGAGAAATAATCTCATG GGTGACGACATATTCTGTTATTATTTTAAACTTTTCCAGGAGTATGCCAGTTTACAAGTG AGTGAGCCCCAGATCCGAGAGGGCATGGAGCGGGTGCAGCCGCAGACCGAGGACGACCTC TTCCCTTGCGCATGCCACAGGAAGAAGACCAAAGATGAACTCTGATGTGCAAAATGCCTT CCCTTCAAATAATGGTGCTCTGACAACTCGTCTTCACTGAAAAGAAGCCTGTCTTTTAAA TACCAAGTCCAAGGACAATATAAAATCTGCTCTGTGATTATTCTGGATTACGAAGATATG TTTCTTCTTATTCTGCAGTATTCCCATGACTGTCCTTTGACGCACATTTTTAGAATTTTA TAATAAAATCACTTTTATTTTAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 101-219, + strand, RNAz p=0.8155 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 101-219, + strand, RNAz p=0.8155 |
| Aligned organism(s): 57 entry(ies) | More info |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
| 101-339, gnl|bosTau2|chr12 (42579761-42579999) | |
| 101-339, gnl|canFam2|chr22 (55236552-55236849) | |
| 101-339, gnl|canFam2|chr22 (55236824-55236590) | |
| 101-339, gnl|danRer3|chr9 (27054981-27054709) | |
| 101-339, gnl|danRer3|chr9 (27054729-27054963) | |
| 101-339, gnl|dasNov1|scaffold_1117 (5211-5508) | |
| 101-339, gnl|dasNov1|scaffold_1117 (5483-5249) | |
| 101-339, gnl|echTel1|scaffold_293928 (7518-7220) | |
| 101-339, gnl|echTel1|scaffold_293928 (7245-7479) | |
| 101-339, gnl|fr1|chrUn (136869927-136869640) | |
| 101-339, gnl|fr1|chrUn (136869660-136869894) | |
| 101-339, gnl|galGal2|chr1 (135489109-135488837) | |
| 101-339, gnl|galGal2|chr1 (135488851-135489085) | |
| 101-339, gnl|hg17|chr13 (102241217-102241512) | |
| 101-339, gnl|Hg17|chr13 (102241490-102241252) | |
| 101-339, gnl|hg17|chr5 (127473926-127474158) | |
| 101-339, gnl|loxAfr1|scaffold_84 (74367-74069) | |
| 101-339, gnl|loxAfr1|scaffold_84 (74094-74328) | |
| 101-339, gnl|mm7|chr1 (44352998-44353294) | |
| 101-339, gnl|mm7|chr1 (44353269-44353035) | |
| 101-339, gnl|Mm7|chr1 (44353270-44353032) | |
| 101-339, gnl|monDom2|scaffold_11 (48280066-48279772) | |
| 101-339, gnl|monDom2|scaffold_11 (48279797-48280031) | |
| 101-339, gnl|oryCun1|scaffold_198036 (3044-2758) | |
| 101-339, gnl|oryCun1|scaffold_198036 (2782-3013) | |
| 101-339, gnl|panTro1|chr14 (85632749-85633044) | |
| 101-339, gnl|panTro1|chr4 (133822869-133823101) | |
| 101-339, gnl|rheMac2|chr17 (83091343-83091638) | |
| 101-339, gnl|rheMac2|chr6 (124513023-124513254) | |
| 101-339, gnl|rn3|chr9 (43201737-43202033) | |
| 101-339, gnl|rn3|chr9 (43202008-43201774) | |
| 101-339, gnl|tetNig1|chr2 (14930121-14929869) | |
| 101-339, gnl|tetNig1|chr2 (14929883-14930117) | |
| 101-339, gnl|xenTro1|scaffold_77 (2360906-2361202) | |
| 101-339, gnl|xenTro1|scaffold_77 (2361180-2360946) | |
| 408-554, gnl|bosTau2|chr12 (42446094-42445947) | |
| 408-554, gnl|canFam2|chr22 (55408782-55408944) | |
| 408-554, gnl|danRer3|chr9 (27055244-27055394) | |
| 408-554, gnl|dasNov1|scaffold_1117 (4263-4113) | |
| 408-554, gnl|echTel1|scaffold_319400 (39683-39839) | |
| 408-554, gnl|fr1|chrUn (136870077-136870240) | |
| 408-554, gnl|galGal2|chr1 (135489732-135489883) | |
| 408-554, gnl|hg17|chr13 (102410121-102410284) | |
| 408-554, gnl|Hg17|chr13 (102410126-102410273) | |
| 408-554, gnl|loxAfr1|scaffold_3839 (34977-34809) | |
| 408-554, gnl|mm7|chr8 (4945301-4945463) | |
| 408-554, gnl|Mm7|chr8 (4945306-4945450) | |
| 408-554, gnl|monDom2|scaffold_11 (48062524-48062361) | |
| 408-554, gnl|oryCun1|scaffold_208846 (157605-157440) | |
| 408-554, gnl|panTro1|chr14 (85802250-85802413) | |
| 408-554, gnl|rheMac2|chr17 (83262928-83263091) | |
| 408-554, gnl|rn3|chr16 (90118544-90118704) | |
| 408-554, gnl|tetNig1|chr2 (14930283-14930446) | |
| 408-554, gnl|xenTro1|scaffold_77 (2349415-2349262) | |
| 746-984, gnl|bosTau2|chr12 (42587575-42587809) | |
| 746-984, gnl|Hg17|chr13 (102234865-102234635) | |
| 746-984, gnl|Mm7|chr1 (44347493-44347271) |
| Aligned organism(s): 57 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 101-339, gnl|bosTau2|chr12 (42579761-42579999) | |
| 101-339, gnl|canFam2|chr22 (55236552-55236849) | |
| 101-339, gnl|canFam2|chr22 (55236824-55236590) | |
| 101-339, gnl|danRer3|chr9 (27054981-27054709) | |
| 101-339, gnl|danRer3|chr9 (27054729-27054963) | |
| 101-339, gnl|dasNov1|scaffold_1117 (5211-5508) | |
| 101-339, gnl|dasNov1|scaffold_1117 (5483-5249) | |
| 101-339, gnl|echTel1|scaffold_293928 (7518-7220) | |
| 101-339, gnl|echTel1|scaffold_293928 (7245-7479) | |
| 101-339, gnl|fr1|chrUn (136869927-136869640) | |
| 101-339, gnl|fr1|chrUn (136869660-136869894) | |
| 101-339, gnl|galGal2|chr1 (135489109-135488837) | |
| 101-339, gnl|galGal2|chr1 (135488851-135489085) | |
| 101-339, gnl|hg17|chr13 (102241217-102241512) | |
| 101-339, gnl|Hg17|chr13 (102241490-102241252) | |
| 101-339, gnl|hg17|chr5 (127473926-127474158) | |
| 101-339, gnl|loxAfr1|scaffold_84 (74367-74069) | |
| 101-339, gnl|loxAfr1|scaffold_84 (74094-74328) | |
| 101-339, gnl|mm7|chr1 (44352998-44353294) | |
| 101-339, gnl|mm7|chr1 (44353269-44353035) | |
| 101-339, gnl|Mm7|chr1 (44353270-44353032) | |
| 101-339, gnl|monDom2|scaffold_11 (48280066-48279772) | |
| 101-339, gnl|monDom2|scaffold_11 (48279797-48280031) | |
| 101-339, gnl|oryCun1|scaffold_198036 (3044-2758) | |
| 101-339, gnl|oryCun1|scaffold_198036 (2782-3013) | |
| 101-339, gnl|panTro1|chr14 (85632749-85633044) | |
| 101-339, gnl|panTro1|chr4 (133822869-133823101) | |
| 101-339, gnl|rheMac2|chr17 (83091343-83091638) | |
| 101-339, gnl|rheMac2|chr6 (124513023-124513254) | |
| 101-339, gnl|rn3|chr9 (43201737-43202033) | |
| 101-339, gnl|rn3|chr9 (43202008-43201774) | |
| 101-339, gnl|tetNig1|chr2 (14930121-14929869) | |
| 101-339, gnl|tetNig1|chr2 (14929883-14930117) | |
| 101-339, gnl|xenTro1|scaffold_77 (2360906-2361202) | |
| 101-339, gnl|xenTro1|scaffold_77 (2361180-2360946) | |
| 408-554, gnl|bosTau2|chr12 (42446094-42445947) | |
| 408-554, gnl|canFam2|chr22 (55408782-55408944) | |
| 408-554, gnl|danRer3|chr9 (27055244-27055394) | |
| 408-554, gnl|dasNov1|scaffold_1117 (4263-4113) | |
| 408-554, gnl|echTel1|scaffold_319400 (39683-39839) | |
| 408-554, gnl|fr1|chrUn (136870077-136870240) | |
| 408-554, gnl|galGal2|chr1 (135489732-135489883) | |
| 408-554, gnl|hg17|chr13 (102410121-102410284) | |
| 408-554, gnl|Hg17|chr13 (102410126-102410273) | |
| 408-554, gnl|loxAfr1|scaffold_3839 (34977-34809) | |
| 408-554, gnl|mm7|chr8 (4945301-4945463) | |
| 408-554, gnl|Mm7|chr8 (4945306-4945450) | |
| 408-554, gnl|monDom2|scaffold_11 (48062524-48062361) | |
| 408-554, gnl|oryCun1|scaffold_208846 (157605-157440) | |
| 408-554, gnl|panTro1|chr14 (85802250-85802413) | |
| 408-554, gnl|rheMac2|chr17 (83262928-83263091) | |
| 408-554, gnl|rn3|chr16 (90118544-90118704) | |
| 408-554, gnl|tetNig1|chr2 (14930283-14930446) | |
| 408-554, gnl|xenTro1|scaffold_77 (2349415-2349262) | |
| 746-984, gnl|bosTau2|chr12 (42587575-42587809) | |
| 746-984, gnl|Hg17|chr13 (102234865-102234635) | |
| 746-984, gnl|Mm7|chr1 (44347493-44347271) |
| Expressed library(ies): 11 entry(ies) | More info |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
| vin (0.332557) | |
| sme (0.305437) | |
| kid (0.259471) | |
| cmu (0.186393) | |
| ton (0.1755) | |
| cut (0.169924) | |
| fat (0.147427) | |
| ret (0.128733) | |
| thg (0.126791) | |
| ecc (0.115035) | |
| eje (0.0988338) |
| Expressed library(ies): 11 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| vin (0.332557) | |
| sme (0.305437) | |
| kid (0.259471) | |
| cmu (0.186393) | |
| ton (0.1755) | |
| cut (0.169924) | |
| fat (0.147427) | |
| ret (0.128733) | |
| thg (0.126791) | |
| ecc (0.115035) | |
| eje (0.0988338) |