Non-Coding RNA Search

Ss1.1-Pig4-TMW8046J01.3

Sequence:


               
               CCGTCCCACGAAGGATTCAAGAAAAGGTTTTAAAATTTCTTCTTGTAAAATCAACATCCT
AATAACTTGGCTAAAACAGTACAGCTGGTGGCACTGAGGCACCCACTGGCCTCTGGGCTG
CAGACCAGCTGCAAAGGGCCTAGGGCTAAGAGGTGGCAGATTCAAGGTCGTAGGTTGGAA
GAGTCACTTGATGACACTTTCTGGTAGAATCTGATGTCCTCAGAAGGAAGCCTGAATTTC
GTAGGCTGGCCCCAGGAATGGGTGAGGCTGTTGATATGGGTGAGGCTGTTGATGTGGAGG
CCACTGATGGCGTTGAGGAACAAGAGGAAGCAGGCCGTGAACTCGCTCCAGAACATCAGG
GTGAAGCCGATGAGCCTGACCTGGTTCCTGAGAAGGATCAGGAAGCTCAGGAGACCCCCG
AAGGAGAGGACGAAAGAGACGAGGAGGAGGACGGAGCCCATGGCCCACTTGTGCCGGGAG
TGGAGGTCCTCGCACACCTGGGACACCATGAGGAACTCCAGGCCAAAGATGGCGACCACC
ACGGCCAAGGTGGCCATGCTGCGGGCCAGGACCATGCCCCAGGCCAGCTCAGGCACGTGG
GCCTGACTCAAGTCTCTGACGCAGTGTGGGGCAGTCTGGTTGGAGGTCGTGCAGAACTGC
CACAGCCCGAAGAGGCGGTCCTCGGCCAGGAGCCAGTGGCCATCGCAGATGGAGATGGAG
GAGAGGATCACAGCCAGGGAGGCACACAGGATGATGAGGGTCCGGATAAAGGACTCAAAG
AAGGACTGGTGAGGCCTCCTCTGGGCCAGCAGCCTCTGGGCCTGCACGCCGAGGGAGGTC
ATGCTGCGCCGCGGATCAGCCGCGCTCTCCCGCCCGGCTCCTTCGCGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGTCCCACGAAGGATTCAAGAAAAGGTTTTAAAATTTCTTCTTGTAAAATCAACATCCT
AATAACTTGGCTAAAACAGTACAGCTGGTGGCACTGAGGCACCCACTGGCCTCTGGGCTG
CAGACCAGCTGCAAAGGGCCTAGGGCTAAGAGGTGGCAGATTCAAGGTCGTAGGTTGGAA
GAGTCACTTGATGACACTTTCTGGTAGAATCTGATGTCCTCAGAAGGAAGCCTGAATTTC
GTAGGCTGGCCCCAGGAATGGGTGAGGCTGTTGATATGGGTGAGGCTGTTGATGTGGAGG
CCACTGATGGCGTTGAGGAACAAGAGGAAGCAGGCCGTGAACTCGCTCCAGAACATCAGG
GTGAAGCCGATGAGCCTGACCTGGTTCCTGAGAAGGATCAGGAAGCTCAGGAGACCCCCG
AAGGAGAGGACGAAAGAGACGAGGAGGAGGACGGAGCCCATGGCCCACTTGTGCCGGGAG
TGGAGGTCCTCGCACACCTGGGACACCATGAGGAACTCCAGGCCAAAGATGGCGACCACC
ACGGCCAAGGTGGCCATGCTGCGGGCCAGGACCATGCCCCAGGCCAGCTCAGGCACGTGG
GCCTGACTCAAGTCTCTGACGCAGTGTGGGGCAGTCTGGTTGGAGGTCGTGCAGAACTGC
CACAGCCCGAAGAGGCGGTCCTCGGCCAGGAGCCAGTGGCCATCGCAGATGGAGATGGAG
GAGAGGATCACAGCCAGGGAGGCACACAGGATGATGAGGGTCCGGATAAAGGACTCAAAG
AAGGACTGGTGAGGCCTCCTCTGGGCCAGCAGCCTCTGGGCCTGCACGCCGAGGGAGGTC
ATGCTGCGCCGCGGATCAGCCGCGCTCTCCCGCCCGGCTCCTTCGCGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8WXS4_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8WXS4_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               451-637, - strand, RNAz p=0.989277

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               451-637, - strand, RNAz p=0.989277

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-136, gnl|bosTau2|chr2 (44334960-44335107)
               

               
               1-136, gnl|Hg17|chr2 (119911555-119911419)
               

               
               1-136, gnl|Mm7|chr1 (119933901-119934057)
               


               
               176-818, gnl|bosTau2|chr13 (27866009-27866651)
               

               
               176-818, gnl|Hg17|chr2 (119911319-119910696)
               

               
               176-818, gnl|Mm7|chr1 (119934149-119934752)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-136, gnl|bosTau2|chr2 (44334960-44335107)
               

               
               1-136, gnl|Hg17|chr2 (119911555-119911419)
               

               
               1-136, gnl|Mm7|chr1 (119933901-119934057)
               


               
               176-818, gnl|bosTau2|chr13 (27866009-27866651)
               

               
               176-818, gnl|Hg17|chr2 (119911319-119910696)
               

               
               176-818, gnl|Mm7|chr1 (119934149-119934752)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               duo (0.172801)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               duo (0.172801)

	1-136, gnl\|bosTau2\|chr2 (44334960-44335107)
	1-136, gnl\|Hg17\|chr2 (119911555-119911419)
	1-136, gnl\|Mm7\|chr1 (119933901-119934057)

	176-818, gnl\|bosTau2\|chr13 (27866009-27866651)
	176-818, gnl\|Hg17\|chr2 (119911319-119910696)
	176-818, gnl\|Mm7\|chr1 (119934149-119934752)