Non-Coding RNA Search

Ss1.1-Pig4-TMW8046J06.3

Sequence:


               
               GTGTTTTTTTTTTTGTTTTGTTTTGGTTTTTTTTTTAGTGATTCGCCTTTGCCAGTCTCA
TCCCGTGTCTGCTTTGTTAAGTTCCATGATCCAGACTCAGCAGTTGTGGCACAGCATCTG
ACAAACACTGTATTCGTTGACAGAGCTTTGATAGTCGTACCATATGCAGAAGGTTTGTGC
TTTGTTTAACTATCTTTGTGGGCATCCTATGATGACCATCTACCTCAGTGTAGTTTTAGA
GTGAGCATTAGTAGCATGTTAAAAATATAAGCTGTTAACATTTTGAAACCCTTGTTATAC
TGTGGTCCATATTTTTACTTGAAGACAGTTTTTTAATTTCAAAATTCAAAATCAGATGTT
TTTATAAGATGTTTAACATTTTGCATTCTTTTGAAACATTTTAAAGTTCATTAAAATTGT
ATCCCTGATGGTAATTCCTTAAGATACATCTGCTTAGTTAATTTAACATTGCATTTTATG
AAAAAGTCCTGAAGGTGAATGGTTCACTCCATGCACATTACAGAATCCTTCAAATAAATG
CATGATATTATTTCTGTTTTGAATAAATATGACTAGGTTGGTTTTATTTCCTTAGTGATT
CCTCTCACTGATAACTTTAAAAAATATATCCCACATCGAATTCCAGTATACCAAGGGTCA
CAATGATTTTGGTTTTTATGAAAGTTTAAGATTTCCTATAGCTTAGGTGCCAGATGGGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGTTTTTTTTTTTGTTTTGTTTTGGTTTTTTTTTTAGTGATTCGCCTTTGCCAGTCTCA
TCCCGTGTCTGCTTTGTTAAGTTCCATGATCCAGACTCAGCAGTTGTGGCACAGCATCTG
ACAAACACTGTATTCGTTGACAGAGCTTTGATAGTCGTACCATATGCAGAAGGTTTGTGC
TTTGTTTAACTATCTTTGTGGGCATCCTATGATGACCATCTACCTCAGTGTAGTTTTAGA
GTGAGCATTAGTAGCATGTTAAAAATATAAGCTGTTAACATTTTGAAACCCTTGTTATAC
TGTGGTCCATATTTTTACTTGAAGACAGTTTTTTAATTTCAAAATTCAAAATCAGATGTT
TTTATAAGATGTTTAACATTTTGCATTCTTTTGAAACATTTTAAAGTTCATTAAAATTGT
ATCCCTGATGGTAATTCCTTAAGATACATCTGCTTAGTTAATTTAACATTGCATTTTATG
AAAAAGTCCTGAAGGTGAATGGTTCACTCCATGCACATTACAGAATCCTTCAAATAAATG
CATGATATTATTTCTGTTTTGAATAAATATGACTAGGTTGGTTTTATTTCCTTAGTGATT
CCTCTCACTGATAACTTTAAAAAATATATCCCACATCGAATTCCAGTATACCAAGGGTCA
CAATGATTTTGGTTTTTATGAAAGTTTAAGATTTCCTATAGCTTAGGTGCCAGATGGGCA

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               7-720, gnl|bosTau2|chr3 (50488378-50487657)
               

               
               7-720, gnl|Hg17|chr1 (70406093-70406803)
               

               
               7-720, gnl|Mm7|chr3 (157935058-157934371)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               7-720, gnl|bosTau2|chr3 (50488378-50487657)
               

               
               7-720, gnl|Hg17|chr1 (70406093-70406803)
               

               
               7-720, gnl|Mm7|chr3 (157935058-157934371)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               eye (0.170503)
               

               
               kid (0.129735)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               eye (0.170503)
               

               
               kid (0.129735)

	7-720, gnl\|bosTau2\|chr3 (50488378-50487657)
	7-720, gnl\|Hg17\|chr1 (70406093-70406803)
	7-720, gnl\|Mm7\|chr3 (157935058-157934371)