Non-Coding RNA Search

Ss1.1-Pig4-TMW8046J15.5

Sequence:


               
               GTTTTCTTGAAAAAGGCGCTCCAACGTCCTTTACATGAAAAAGGACCAAGCAAGCGTACG
TCTCCATCAGGCCAAAATACGCAGATGCTAAAAAGCTGGAACGTCATCACTTTCTTGGAG
AAGAGTGTTACCAGAGTTTAAGATGAGTTGTCTTTGGGTCTCATGGCCGCATATATGTAG
ATGTTTGGAGTCATCAGTGAATCACTTTATTCTCATTCTACAGCATACCGTCTTAGCCCT
CTGTCCAGATGAAATATGAGAGAGCCATCTATACAGATAGACCTTTATCAATATGAAAAT
TTATTACAGCCAATAAGTAGACTACTTATCAACACTGCAATCGTTCTAAGAGCTCAGAAT
AGGATTTTCCAAGGATTAGGTACCGTCCGATCCAAAAATAGAGACTGCAGTCTCTTGTTC
CCCTTGGAAAGGGGGAAGAATAGGAATACAAGCTGTTTCTAACACGCTGATGTCGAAGCT
GTCAAAATTCCAACTGGCTGGATGATTCAATTAGCAACCTGATTTTTTCTTCCACACTCA
CTTCCTGATTTGAAGATTCACTTCCCCAAAGCAAGAGTTAGTCAGAGAAACCAAAAACTT
AGTTGAAAATGTTCTTAGTTGTTATTCTGGTTTTATTGCTTACGGAAATGTTAATTTCTA
AAAGATATGAAAAGGTACCAAACTCCTAAATTGTAATGAAGTAGTCGATAATAAGGCCAG
AAAAATAACCCGTAACATGATTTTACCCCTTAGAATTGATTTTAAAACGGGCTATAATTC
AAATGATAAAAAAACTATGAAATGATTTAACATCTTATTTTAAAGTTATTCATGCAAGAG
AAATTTTATGCTTAAGGCATTATGGCAATACATGCAAAGTTTAAATGAATGACAGAAATT
CTGATTCTAGACTACATGTGCTGTTTCGAGTACACTTTATTTCAGAAAGTGATATTTAGT
ATTTTCTATACTCTCTGAGGTCATGAGCATTTCACTTTTTCTAAGTCAGTTATTTCATAA
GGATTTTATTAATAGATATTGGTAAATAGAACTTTGGAAATCTTAATTCAGTATTCTTAC
TATACCCAAGGCTTTTTGTAAGCTATAGTTTTATGTACAACCTTGTACAGTTTTTTTGAC
ATACAATTCAGAATCTTGTTTATTACTCTCTTGGACTTTGTTCTGGCCAATACATTTTTT
TAAACTCTTCTAAGAAAAATTGTGATTGTTTTAGTGGGTATTTTTCTAAGTAAATGAAAA
CTTGTATAATGGTATTTTAGAGAATGCCAGATAAGTGCATGTTTCAAGTTAATGGTTTTC
TCATCACTTGTATGTTTATACACAGCATGGGACTTTAATAAAACCATCCTGGAAACTCAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTTCTTGAAAAAGGCGCTCCAACGTCCTTTACATGAAAAAGGACCAAGCAAGCGTACG
TCTCCATCAGGCCAAAATACGCAGATGCTAAAAAGCTGGAACGTCATCACTTTCTTGGAG
AAGAGTGTTACCAGAGTTTAAGATGAGTTGTCTTTGGGTCTCATGGCCGCATATATGTAG
ATGTTTGGAGTCATCAGTGAATCACTTTATTCTCATTCTACAGCATACCGTCTTAGCCCT
CTGTCCAGATGAAATATGAGAGAGCCATCTATACAGATAGACCTTTATCAATATGAAAAT
TTATTACAGCCAATAAGTAGACTACTTATCAACACTGCAATCGTTCTAAGAGCTCAGAAT
AGGATTTTCCAAGGATTAGGTACCGTCCGATCCAAAAATAGAGACTGCAGTCTCTTGTTC
CCCTTGGAAAGGGGGAAGAATAGGAATACAAGCTGTTTCTAACACGCTGATGTCGAAGCT
GTCAAAATTCCAACTGGCTGGATGATTCAATTAGCAACCTGATTTTTTCTTCCACACTCA
CTTCCTGATTTGAAGATTCACTTCCCCAAAGCAAGAGTTAGTCAGAGAAACCAAAAACTT
AGTTGAAAATGTTCTTAGTTGTTATTCTGGTTTTATTGCTTACGGAAATGTTAATTTCTA
AAAGATATGAAAAGGTACCAAACTCCTAAATTGTAATGAAGTAGTCGATAATAAGGCCAG
AAAAATAACCCGTAACATGATTTTACCCCTTAGAATTGATTTTAAAACGGGCTATAATTC
AAATGATAAAAAAACTATGAAATGATTTAACATCTTATTTTAAAGTTATTCATGCAAGAG
AAATTTTATGCTTAAGGCATTATGGCAATACATGCAAAGTTTAAATGAATGACAGAAATT
CTGATTCTAGACTACATGTGCTGTTTCGAGTACACTTTATTTCAGAAAGTGATATTTAGT
ATTTTCTATACTCTCTGAGGTCATGAGCATTTCACTTTTTCTAAGTCAGTTATTTCATAA
GGATTTTATTAATAGATATTGGTAAATAGAACTTTGGAAATCTTAATTCAGTATTCTTAC
TATACCCAAGGCTTTTTGTAAGCTATAGTTTTATGTACAACCTTGTACAGTTTTTTTGAC
ATACAATTCAGAATCTTGTTTATTACTCTCTTGGACTTTGTTCTGGCCAATACATTTTTT
TAAACTCTTCTAAGAAAAATTGTGATTGTTTTAGTGGGTATTTTTCTAAGTAAATGAAAA
CTTGTATAATGGTATTTTAGAGAATGCCAGATAAGTGCATGTTTCAAGTTAATGGTTTTC
TCATCACTTGTATGTTTATACACAGCATGGGACTTTAATAAAACCATCCTGGAAACTCAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               1081-1200, - strand, RNAz p=0.544916

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1081-1200, - strand, RNAz p=0.544916

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               284-1380, gnl|bosTau2|chr16 (52663334-52662232)
               

               
               284-1380, gnl|Hg17|chr1 (209552209-209553322)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               284-1380, gnl|bosTau2|chr16 (52663334-52662232)
               

               
               284-1380, gnl|Hg17|chr1 (209552209-209553322)

Expressed library(ies): 11 entry(ies)

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Expressed library(ies): 11 entry(ies)

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               pro (1.02407)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

Expressed library(ies): 11 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               pro (1.02407)
               

               
               mga (0.160205)
               

               
               tbr (0.154178)
               

               
               liv (0.146284)
               

               
               csk (0.140746)
               

               
               ret (0.128733)
               

               
               thg (0.126791)
               

               
               bla (0.124347)
               

               
               eep (0.122564)
               

               
               cty (0.10408)
               

               
               ldo (0.0970026)

	284-1380, gnl\|bosTau2\|chr16 (52663334-52662232)
	284-1380, gnl\|Hg17\|chr1 (209552209-209553322)

	pro (1.02407)
	mga (0.160205)
	tbr (0.154178)
	liv (0.146284)
	csk (0.140746)
	ret (0.128733)
	thg (0.126791)
	bla (0.124347)
	eep (0.122564)
	cty (0.10408)
	ldo (0.0970026)