Non-Coding RNA Search

Ss1.1-Pig4-TMW8046J17.3

Sequence:


               
               CTCATATGTTTGTATAAATGAATGCTGTTTGACTTCAGAGTTCGTAATGGTTTCCTTTGG
TTATATTTTAAATCAAAAGGTCTGGGTAATGTATCAATTTTGATTAATATATGTTTTTTT
AAAACAAAAAGAAAACCTCAAAAAATAATGTAATGATTAATAGTAGAAATGTGCCACACT
TCTTAAGTTTTGTATAACATGAAATTCAGCTAAAACAACTTGCAGTTTATAATGACTTGT
AACAGGTAGACTATTACTTGCATGAGGTACTTAATGTATGATTGATTATCCTGCAGTGTC
TGAGTATATAGGGTATTCTTTATGTGAAACTATTCTTTTGTCTTGTCAGTCCTTCAGAAT
ATGGCTGTTTATTCTGGTAATAGAGCCTACCGCACATGGCAGTTGACTTTGTGGAGTCAC
CACTGGGGGAAGGGTCTTCTAGTCTTTGCAGATTGAGTCTGTGCTGTTAAGATGGACTGC
CAGCCTGTATCTCTTTCTCACTGTGGGATCAGAGGTGCCGCTGCAGAATAGCTGAAGAGT
GCTTCCAGTGCTTCCTCATCTGTGGTGAAGATGGAGTCCTAAAACATATTTGGAGTTTTA
TCAGTTTTACAAGTACATTGATGGCCTAAATTCTCCTTGTCTCCTGCCATTTGAGCTCTG
AGGGATTCCTGTTGCTAAATACGAAGAATGTGGAACATTCATATGGCCTCTGTGACTGAG
GAAGGAATACATTTCCTCCTTACCAGCTTCATGCTCATCTTTTGGAAACACTGATGTCAT
ACTCAACTTCCAAAGAATCATATTGTGTTTTAAGACAGCTAGGTTAAGTAGAAGGCAGTG
AAGAATGCACTAACTTGGAGGAAATATTTTGATAGACAAAGTTCCCAATTGAAGGAATTA
TTTAATAAGTAAAAGCTAAGAAATTTCTTTGAAATCGTAAAGCAGTTTAAAAATAAATTA
GTTAAAATAACTATACTACCTAACAATTATTCAACCAAGTGGAGAGTCAAGTGAATATTA
TTTGTTTATTGGGTTGGTAACAGTTTATTTCTAAGCTTGATTCTGTTGAAAGATAACCTT
CTGTTAGTATGTTCTATATTAATAAAAATGAACACAATTTTGCTATGTTCAAGTGTCTTG
CTAAAATAACAGTGCCCCAGTGTTGTTGCTAGTAATATTTAGGACTAAATTTTAGCTCAG
GGTCAGTAAGTCCAAATTTTAACATTTTCATGCTTAGATTTTATTGCCATATGTATAAAT
ATTAATCATTCTGACAGCATTAACTGCAGGGTTTACTGAGAAACATCTGTTCTTACCAGG
AAGTAGTCAGATTGTAATCTCAGTTATGGGCAGACAGGCTAAATTTGGCAGTAGATAAGG
GAAAATTTCTGGTAAATAGAAAATGTATAACTCATGGAGAGACAAGGATGATGAAAATAA
TGAAGTGGGTGGAGATATGAAAAGCCAGACTAGGAAAGGGGTGTCTGAAAAGTAGGGTTC
AGCCTGCTCACCTCTTATCTTCATGGAAACACTGCCTTAAAATTACTTTATGGTCCTTTG
TTGGTTTAGCTGCAAAGTTATATTCTTTGTGAACATGGATATTTTGAGGGGAGGGTGGAG
GGAGTAAGGAAGTGCTGTTTCAAGAAGAATTTGGTGCATAGAGTTTTGTTGTATCTGGAT
AAACTAGTAAAGTGTATTAGAGCCTCTTTTTAGCCCATGCCCCATTCAATAAACATAAAA
ATCACATTTCCCCAGATGTCATTTGAAATTTCAAAATAAATATCTTGTCTAAAATCAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCATATGTTTGTATAAATGAATGCTGTTTGACTTCAGAGTTCGTAATGGTTTCCTTTGG
TTATATTTTAAATCAAAAGGTCTGGGTAATGTATCAATTTTGATTAATATATGTTTTTTT
AAAACAAAAAGAAAACCTCAAAAAATAATGTAATGATTAATAGTAGAAATGTGCCACACT
TCTTAAGTTTTGTATAACATGAAATTCAGCTAAAACAACTTGCAGTTTATAATGACTTGT
AACAGGTAGACTATTACTTGCATGAGGTACTTAATGTATGATTGATTATCCTGCAGTGTC
TGAGTATATAGGGTATTCTTTATGTGAAACTATTCTTTTGTCTTGTCAGTCCTTCAGAAT
ATGGCTGTTTATTCTGGTAATAGAGCCTACCGCACATGGCAGTTGACTTTGTGGAGTCAC
CACTGGGGGAAGGGTCTTCTAGTCTTTGCAGATTGAGTCTGTGCTGTTAAGATGGACTGC
CAGCCTGTATCTCTTTCTCACTGTGGGATCAGAGGTGCCGCTGCAGAATAGCTGAAGAGT
GCTTCCAGTGCTTCCTCATCTGTGGTGAAGATGGAGTCCTAAAACATATTTGGAGTTTTA
TCAGTTTTACAAGTACATTGATGGCCTAAATTCTCCTTGTCTCCTGCCATTTGAGCTCTG
AGGGATTCCTGTTGCTAAATACGAAGAATGTGGAACATTCATATGGCCTCTGTGACTGAG
GAAGGAATACATTTCCTCCTTACCAGCTTCATGCTCATCTTTTGGAAACACTGATGTCAT
ACTCAACTTCCAAAGAATCATATTGTGTTTTAAGACAGCTAGGTTAAGTAGAAGGCAGTG
AAGAATGCACTAACTTGGAGGAAATATTTTGATAGACAAAGTTCCCAATTGAAGGAATTA
TTTAATAAGTAAAAGCTAAGAAATTTCTTTGAAATCGTAAAGCAGTTTAAAAATAAATTA
GTTAAAATAACTATACTACCTAACAATTATTCAACCAAGTGGAGAGTCAAGTGAATATTA
TTTGTTTATTGGGTTGGTAACAGTTTATTTCTAAGCTTGATTCTGTTGAAAGATAACCTT
CTGTTAGTATGTTCTATATTAATAAAAATGAACACAATTTTGCTATGTTCAAGTGTCTTG
CTAAAATAACAGTGCCCCAGTGTTGTTGCTAGTAATATTTAGGACTAAATTTTAGCTCAG
GGTCAGTAAGTCCAAATTTTAACATTTTCATGCTTAGATTTTATTGCCATATGTATAAAT
ATTAATCATTCTGACAGCATTAACTGCAGGGTTTACTGAGAAACATCTGTTCTTACCAGG
AAGTAGTCAGATTGTAATCTCAGTTATGGGCAGACAGGCTAAATTTGGCAGTAGATAAGG
GAAAATTTCTGGTAAATAGAAAATGTATAACTCATGGAGAGACAAGGATGATGAAAATAA
TGAAGTGGGTGGAGATATGAAAAGCCAGACTAGGAAAGGGGTGTCTGAAAAGTAGGGTTC
AGCCTGCTCACCTCTTATCTTCATGGAAACACTGCCTTAAAATTACTTTATGGTCCTTTG
TTGGTTTAGCTGCAAAGTTATATTCTTTGTGAACATGGATATTTTGAGGGGAGGGTGGAG
GGAGTAAGGAAGTGCTGTTTCAAGAAGAATTTGGTGCATAGAGTTTTGTTGTATCTGGAT
AAACTAGTAAAGTGTATTAGAGCCTCTTTTTAGCCCATGCCCCATTCAATAAACATAAAA
ATCACATTTCCCCAGATGTCATTTGAAATTTCAAAATAAATATCTTGTCTAAAATCAAAA
AAAAAAAAAAAA

Aligned organism(s): 5 entry(ies)

More info

Aligned organism(s): 5 entry(ies)

Help | Less info


               
               1-1796, gnl|bosTau2|chr9 (7925615-7923817)
               

               
               1-1796, gnl|Hg17|chr6 (76021154-76019363)
               

               
               1-1796, gnl|Mm7|chr9 (79846297-79844696)
               


               
               697-1120, gnl|bosTau2|chr10 (32048911-32048481)
               

               
               697-1120, gnl|Hg17|chr6 (76020475-76020051)

Aligned organism(s): 5 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-1796, gnl|bosTau2|chr9 (7925615-7923817)
               

               
               1-1796, gnl|Hg17|chr6 (76021154-76019363)
               

               
               1-1796, gnl|Mm7|chr9 (79846297-79844696)
               


               
               697-1120, gnl|bosTau2|chr10 (32048911-32048481)
               

               
               697-1120, gnl|Hg17|chr6 (76020475-76020051)

Expressed library(ies): 30 entry(ies)

More info

Expressed library(ies): 30 entry(ies)

Help | Less info


               
               fcc (1.18671)
               

               
               sug (0.636456)
               

               
               fco (0.471624)
               

               
               ece (0.45861)
               

               
               ret (0.3862)
               

               
               fty (0.351679)
               

               
               fhi (0.339155)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

Expressed library(ies): 30 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fcc (1.18671)
               

               
               sug (0.636456)
               

               
               fco (0.471624)
               

               
               ece (0.45861)
               

               
               ret (0.3862)
               

               
               fty (0.351679)
               

               
               fhi (0.339155)
               

               
               ute (0.265569)
               

               
               ova (0.258264)
               

               
               tra (0.246184)
               

               
               cbe (0.239234)
               

               
               aor (0.195274)
               

               
               cmu (0.186393)
               

               
               ill (0.175593)
               

               
               fbs (0.175346)
               

               
               rec (0.17307)
               

               
               nje (0.16592)
               

               
               tbr (0.154178)
               

               
               spl (0.143184)
               

               
               hyp (0.142837)
               

               
               pla (0.133672)
               

               
               cbr (0.127975)
               

               
               ese (0.126502)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)
               

               
               jca (0.11396)
               

               
               jej (0.0989218)
               

               
               ldo (0.0970026)

	1-1796, gnl\|bosTau2\|chr9 (7925615-7923817)
	1-1796, gnl\|Hg17\|chr6 (76021154-76019363)
	1-1796, gnl\|Mm7\|chr9 (79846297-79844696)

	697-1120, gnl\|bosTau2\|chr10 (32048911-32048481)
	697-1120, gnl\|Hg17\|chr6 (76020475-76020051)

	fcc (1.18671)
	sug (0.636456)
	fco (0.471624)
	ece (0.45861)
	ret (0.3862)
	fty (0.351679)
	fhi (0.339155)
	ute (0.265569)
	ova (0.258264)
	tra (0.246184)
	cbe (0.239234)
	aor (0.195274)
	cmu (0.186393)
	ill (0.175593)
	fbs (0.175346)
	rec (0.17307)
	nje (0.16592)
	tbr (0.154178)
	spl (0.143184)
	hyp (0.142837)
	pla (0.133672)
	cbr (0.127975)
	ese (0.126502)
	eru (0.120048)
	pgl (0.118483)
	ebs (0.118301)
	ecc (0.115035)
	jca (0.11396)
	jej (0.0989218)
	ldo (0.0970026)