Non-Coding RNA Search

Ss1.1-Pig4-TMW8046J23.5

Sequence:


               
               CTTCTTCACTGCAACACGATGGGGCAACACTTGTGTTATCTGCCTTTACAGATGGGGAAG
CTGAGGCCCAGACCACCCAGGTAACCTTCACAAGGTCATATGGCCGCGTATGGGTTCAGG
GCCTAGATGAATCTTGGGATCCTGTGTGCTGCATCCCCCACCCCCATCCGCCTCCCAATC
TCATACCAGAAACAGGTCTGAGCAACAACAGAGCAGATGGAGATGAGGCTGTGACCTCTG
TCCTGAAGACCTAAGGTTGCTTGATGAGCCCTGGGCAGAGGCAGGATAGAACCAAAGGGG
TGTTTTGTTGCCCTCATTGATTTTGGAAGACAGTTCAGGGTGTGCTGGCTGTCCTGGCCC
ATGGGGCTGGCCTAGAGTTTGAAATTCAGAGGCCACCATGTGATCCTAGCCCCTGACCAC
TCAGGGACATGTGGGCTGGGCCTGTGGACCTCTGGGGTAAGGGTCCAAGTCCAGTCCTGT
CCCATCAGGCTTCTTAGAGCAGGAGCCGCAGCTTGTCCCTTAAATAAGGGATGGAACTCC
GTGTCCTTCAAGTCTTTGTCTCTCTCTCTGGCCCTTTTGTAAGCCCTGCATTCTGAGTGC
AGTTGGAGTAAGTGGGTGAGCCCCTCCAGAAAGGCCAGTCCTAAGGTTCAGAGAGCGACT
GTTAAATGGTGACTCGAGGGGCAGGCCTGACTCCTAGTGGTGGGACCATTCAGCCAAGAT
GTCATGAGGAAGCTTCTGCCTTTGCCAGGCAGCTTCTGGAAACAGACCTATCCCTGAGGC
CAGGGCAGTCCTCAGCACACCCGTGTCTTGGAAGCTGCACCTTCTCTCTCCTCTCCATCT
GTGGTTGGCACCACCTGCCCTCCCTTCCACCTCCTCAGCCTGGACAGCTGCACCTCTGCC
TTTTCCCCAGCTCCCCAGTGACAGGTTCAGGTGGAGAGCACTGGAATCTGGGCTTCTTTC
TGGGACACGTGGTGCTGGATCTGCTGGCACAGGCGGCCTGGGAAGCCCGTCTGGGCAGCA
GAGAGCCTGCAACTGGGCTTTAGGCCCAAAGCACAGAGACCCTTGGCTTTCTCTTCCCAT
CAGGGGAAAGGCAGTGGTACAGGGAAGAAAAAGAAGCCCACATTTCCTTATAAACCTAGA
GATGGTGTGTGATACCAAACCTCTGGTCTCTCACAGGGCTCCCTGTCACCCAGGTTTGCA
GGTGGCTGAGTTCCTCTAACCTGGGCCATATTTGAAATGAAAATTCAGAATTTTATACTT
TTCCCCACCACCTAGAGAAACAAGGTTTTTGGGGTCAACACTGTTTATATGAAACTAGGG
TTCTTTATTTGTTAATAGTTCCTGCTAAGCCAGTGAATAAAAACTCAAGGAGCAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTCTTCACTGCAACACGATGGGGCAACACTTGTGTTATCTGCCTTTACAGATGGGGAAG
CTGAGGCCCAGACCACCCAGGTAACCTTCACAAGGTCATATGGCCGCGTATGGGTTCAGG
GCCTAGATGAATCTTGGGATCCTGTGTGCTGCATCCCCCACCCCCATCCGCCTCCCAATC
TCATACCAGAAACAGGTCTGAGCAACAACAGAGCAGATGGAGATGAGGCTGTGACCTCTG
TCCTGAAGACCTAAGGTTGCTTGATGAGCCCTGGGCAGAGGCAGGATAGAACCAAAGGGG
TGTTTTGTTGCCCTCATTGATTTTGGAAGACAGTTCAGGGTGTGCTGGCTGTCCTGGCCC
ATGGGGCTGGCCTAGAGTTTGAAATTCAGAGGCCACCATGTGATCCTAGCCCCTGACCAC
TCAGGGACATGTGGGCTGGGCCTGTGGACCTCTGGGGTAAGGGTCCAAGTCCAGTCCTGT
CCCATCAGGCTTCTTAGAGCAGGAGCCGCAGCTTGTCCCTTAAATAAGGGATGGAACTCC
GTGTCCTTCAAGTCTTTGTCTCTCTCTCTGGCCCTTTTGTAAGCCCTGCATTCTGAGTGC
AGTTGGAGTAAGTGGGTGAGCCCCTCCAGAAAGGCCAGTCCTAAGGTTCAGAGAGCGACT
GTTAAATGGTGACTCGAGGGGCAGGCCTGACTCCTAGTGGTGGGACCATTCAGCCAAGAT
GTCATGAGGAAGCTTCTGCCTTTGCCAGGCAGCTTCTGGAAACAGACCTATCCCTGAGGC
CAGGGCAGTCCTCAGCACACCCGTGTCTTGGAAGCTGCACCTTCTCTCTCCTCTCCATCT
GTGGTTGGCACCACCTGCCCTCCCTTCCACCTCCTCAGCCTGGACAGCTGCACCTCTGCC
TTTTCCCCAGCTCCCCAGTGACAGGTTCAGGTGGAGAGCACTGGAATCTGGGCTTCTTTC
TGGGACACGTGGTGCTGGATCTGCTGGCACAGGCGGCCTGGGAAGCCCGTCTGGGCAGCA
GAGAGCCTGCAACTGGGCTTTAGGCCCAAAGCACAGAGACCCTTGGCTTTCTCTTCCCAT
CAGGGGAAAGGCAGTGGTACAGGGAAGAAAAAGAAGCCCACATTTCCTTATAAACCTAGA
GATGGTGTGTGATACCAAACCTCTGGTCTCTCACAGGGCTCCCTGTCACCCAGGTTTGCA
GGTGGCTGAGTTCCTCTAACCTGGGCCATATTTGAAATGAAAATTCAGAATTTTATACTT
TTCCCCACCACCTAGAGAAACAAGGTTTTTGGGGTCAACACTGTTTATATGAAACTAGGG
TTCTTTATTTGTTAATAGTTCCTGCTAAGCCAGTGAATAAAAACTCAAGGAGCAAAAAAA
AAAAAAAAAAAA

Predicted RNA structure(s): 3 entry(ies)

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Predicted RNA structure(s): 3 entry(ies)

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               395-543, - strand, RNAz p=0.97163
               

               
               713-963, - strand, RNAz p=0.91487
               

               
               1003-1121, + strand, RNAz p=0.980949

Predicted RNA structure(s): 3 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               395-543, - strand, RNAz p=0.97163
               

               
               713-963, - strand, RNAz p=0.91487
               

               
               1003-1121, + strand, RNAz p=0.980949

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               297-407, + strand, RNAmicro p=0.923503

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               297-407, + strand, RNAmicro p=0.923503

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_000429, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_000429, +

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               276-1190, gnl|bosTau2|chr28 (27980684-27981651)
               

               
               276-1190, gnl|Hg17|chr10 (82022639-82021777)
               


               
               1192-1375, gnl|bosTau2|chr28 (27981679-27981861)
               

               
               1192-1375, gnl|Hg17|chr10 (82021749-82021559)
               

               
               1192-1375, gnl|Mm7|chr14 (38550693-38550877)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               276-1190, gnl|bosTau2|chr28 (27980684-27981651)
               

               
               276-1190, gnl|Hg17|chr10 (82022639-82021777)
               


               
               1192-1375, gnl|bosTau2|chr28 (27981679-27981861)
               

               
               1192-1375, gnl|Hg17|chr10 (82021749-82021559)
               

               
               1192-1375, gnl|Mm7|chr14 (38550693-38550877)

Expressed library(ies): 4 entry(ies)

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Expressed library(ies): 4 entry(ies)

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               cli (1.37531)
               

               
               fli (0.202881)
               

               
               eli (0.151814)
               

               
               ebs (0.118301)

Expressed library(ies): 4 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cli (1.37531)
               

               
               fli (0.202881)
               

               
               eli (0.151814)
               

               
               ebs (0.118301)

	395-543, - strand, RNAz p=0.97163
	713-963, - strand, RNAz p=0.91487
	1003-1121, + strand, RNAz p=0.980949

	276-1190, gnl\|bosTau2\|chr28 (27980684-27981651)
	276-1190, gnl\|Hg17\|chr10 (82022639-82021777)

	1192-1375, gnl\|bosTau2\|chr28 (27981679-27981861)
	1192-1375, gnl\|Hg17\|chr10 (82021749-82021559)
	1192-1375, gnl\|Mm7\|chr14 (38550693-38550877)