Ss1.1-Pig4-TMW8046J24.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AGAAGCGGCGGCGACTGCGGAGCGTGTGTTAGGCGGCTGAACGGGCTGCGGGCCCCCTCA GGGCGCGGCGAGATGGAGGTGACGGGGTTGTCGGCGCCCACGGTGACCGTTTTCATCAGC AGCTCTCTCAACAGCTTCCGCTCCCAGAAGCGGTATAGTCGCAGCCTCACCGTAGCAGAG TTCAAGGATAAACTACAGCTGGTTGTGGGCAGCCCTGCTTCCTGCATGGAATTGGAACTG TATGGACCTGACGACAAGTTCTATGTCAAGCTGGATCAGGAGGATGCCCTGCTGGGCTCA TACCCTGTAGATGACGGCTGTCGCATCCATGTCATTGACCACAGCGGTGCCCGCCTTGGG GAGTACGAGGACATGTCCAAGGTGGAGAAGTACAAGATCTCACAAGAAGCCTACGACCAG AGGCAAAACTCAGTCCGCTCCTTCCTGAAGCGCAACAAGCTCGGCCGATACAATGAAGAG GAGCGGGCGCAGCGAGAGGCTGAGAGCTCCCAGCGCCTCATCGAGGAGGAGGCCCAGGCC AGTGCCATCCCCGTGGGCAGCCGCTGTGAGGTGCGGGCGCCTGGGCAGCCCCCTCGCCGG GGCACCGTCATGTATGTAGGACTCACAGATTTCAAGCCTGGCTACTGGATCGGCGTCCGC TATGATGAGCCGCTAGGGAAGAACGATGGCAGTGTGAATGGGAAGCGCTACTTTGAATGC CAGGCCAAGTACGGCGCCTTCGTCAAACCATCGGTTGTGACAGTGGGGGACTTTCCCGAG GAGGACTACGGTTTGGATGAGATGTGACACCCAAGGAAGGGCATCCCCCTGCTCCAACTA ACTCGCCTCGCTATTCCCTGTGTGTGCCCACAGCCCCCTCTTCTGACCCTGTTTTTATGT TATTCGCTTTACCCTTGCCATTGACTTTTGAGACCCGTGTATTAAATTTGCTGAAAACCT AAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AGAAGCGGCGGCGACTGCGGAGCGTGTGTTAGGCGGCTGAACGGGCTGCGGGCCCCCTCA GGGCGCGGCGAGATGGAGGTGACGGGGTTGTCGGCGCCCACGGTGACCGTTTTCATCAGC AGCTCTCTCAACAGCTTCCGCTCCCAGAAGCGGTATAGTCGCAGCCTCACCGTAGCAGAG TTCAAGGATAAACTACAGCTGGTTGTGGGCAGCCCTGCTTCCTGCATGGAATTGGAACTG TATGGACCTGACGACAAGTTCTATGTCAAGCTGGATCAGGAGGATGCCCTGCTGGGCTCA TACCCTGTAGATGACGGCTGTCGCATCCATGTCATTGACCACAGCGGTGCCCGCCTTGGG GAGTACGAGGACATGTCCAAGGTGGAGAAGTACAAGATCTCACAAGAAGCCTACGACCAG AGGCAAAACTCAGTCCGCTCCTTCCTGAAGCGCAACAAGCTCGGCCGATACAATGAAGAG GAGCGGGCGCAGCGAGAGGCTGAGAGCTCCCAGCGCCTCATCGAGGAGGAGGCCCAGGCC AGTGCCATCCCCGTGGGCAGCCGCTGTGAGGTGCGGGCGCCTGGGCAGCCCCCTCGCCGG GGCACCGTCATGTATGTAGGACTCACAGATTTCAAGCCTGGCTACTGGATCGGCGTCCGC TATGATGAGCCGCTAGGGAAGAACGATGGCAGTGTGAATGGGAAGCGCTACTTTGAATGC CAGGCCAAGTACGGCGCCTTCGTCAAACCATCGGTTGTGACAGTGGGGGACTTTCCCGAG GAGGACTACGGTTTGGATGAGATGTGACACCCAAGGAAGGGCATCCCCCTGCTCCAACTA ACTCGCCTCGCTATTCCCTGTGTGTGCCCACAGCCCCCTCTTCTGACCCTGTTTTTATGT TATTCGCTTTACCCTTGCCATTGACTTTTGAGACCCGTGTATTAAATTTGCTGAAAACCT AAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | More info |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
| 1-187, gnl|bosTau2|chr18 (41893348-41893534) | |
| 1-187, gnl|canFam2|chr1 (119494760-119494587) | |
| 1-187, gnl|echTel1|scaffold_309793 (55051-55222) | |
| 1-187, gnl|hg17|chr19 (41298171-41298351) | |
| 1-187, gnl|Hg17|chr19 (41298221-41298417) | |
| 1-187, gnl|mm7|chr7 (27173656-27173482) | |
| 1-187, gnl|Mm7|chr7 (27173604-27173414) | |
| 1-187, gnl|monDom2|scaffold_139 (2103977-2104199) | |
| 1-187, gnl|oryCun1|scaffold_145171 (2173-2347) | |
| 1-187, gnl|panTro1|chr20 (38146311-38146494) | |
| 1-187, gnl|rheMac2|chr19 (42608907-42609068) | |
| 1-187, gnl|rn3|chr1 (85568778-85568951) | |
| 189-332, gnl|bosTau2|chr18 (41893930-41894073) | |
| 189-332, gnl|canFam2|chr1 (119494024-119493842) | |
| 189-332, gnl|danRer3|chr18 (39325203-39325376) | |
| 189-332, gnl|dasNov1|scaffold_189209 (4065-4250) | |
| 189-332, gnl|echTel1|scaffold_309793 (55590-55767) | |
| 189-332, gnl|fr1|chrUn (170724038-170724193) | |
| 189-332, gnl|hg17|chr19 (41298769-41298954) | |
| 189-332, gnl|Hg17|chr19 (41298785-41298928) | |
| 189-332, gnl|mm7|chr7 (27173120-27172940) | |
| 189-332, gnl|Mm7|chr7 (27173102-27172959) | |
| 189-332, gnl|monDom2|scaffold_139 (2110704-2110881) | |
| 189-332, gnl|panTro1|chr20 (38146910-38147095) | |
| 189-332, gnl|rheMac2|chr19 (42609487-42609670) | |
| 189-332, gnl|rn3|chr1 (85569312-85569492) | |
| 189-332, gnl|tetNig1|chr16 (1663815-1663650) | |
| 428-620, gnl|bosTau2|chr18 (41898184-41898376) | |
| 428-620, gnl|Hg17|chr19 (41304269-41304461) | |
| 428-620, gnl|Mm7|chr7 (27168870-27168678) | |
| 689-960, gnl|bosTau2|chr18 (41901480-41901754) | |
| 689-960, gnl|Hg17|chr19 (41308406-41308682) |
| Aligned organism(s): 32 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-187, gnl|bosTau2|chr18 (41893348-41893534) | |
| 1-187, gnl|canFam2|chr1 (119494760-119494587) | |
| 1-187, gnl|echTel1|scaffold_309793 (55051-55222) | |
| 1-187, gnl|hg17|chr19 (41298171-41298351) | |
| 1-187, gnl|Hg17|chr19 (41298221-41298417) | |
| 1-187, gnl|mm7|chr7 (27173656-27173482) | |
| 1-187, gnl|Mm7|chr7 (27173604-27173414) | |
| 1-187, gnl|monDom2|scaffold_139 (2103977-2104199) | |
| 1-187, gnl|oryCun1|scaffold_145171 (2173-2347) | |
| 1-187, gnl|panTro1|chr20 (38146311-38146494) | |
| 1-187, gnl|rheMac2|chr19 (42608907-42609068) | |
| 1-187, gnl|rn3|chr1 (85568778-85568951) | |
| 189-332, gnl|bosTau2|chr18 (41893930-41894073) | |
| 189-332, gnl|canFam2|chr1 (119494024-119493842) | |
| 189-332, gnl|danRer3|chr18 (39325203-39325376) | |
| 189-332, gnl|dasNov1|scaffold_189209 (4065-4250) | |
| 189-332, gnl|echTel1|scaffold_309793 (55590-55767) | |
| 189-332, gnl|fr1|chrUn (170724038-170724193) | |
| 189-332, gnl|hg17|chr19 (41298769-41298954) | |
| 189-332, gnl|Hg17|chr19 (41298785-41298928) | |
| 189-332, gnl|mm7|chr7 (27173120-27172940) | |
| 189-332, gnl|Mm7|chr7 (27173102-27172959) | |
| 189-332, gnl|monDom2|scaffold_139 (2110704-2110881) | |
| 189-332, gnl|panTro1|chr20 (38146910-38147095) | |
| 189-332, gnl|rheMac2|chr19 (42609487-42609670) | |
| 189-332, gnl|rn3|chr1 (85569312-85569492) | |
| 189-332, gnl|tetNig1|chr16 (1663815-1663650) | |
| 428-620, gnl|bosTau2|chr18 (41898184-41898376) | |
| 428-620, gnl|Hg17|chr19 (41304269-41304461) | |
| 428-620, gnl|Mm7|chr7 (27168870-27168678) | |
| 689-960, gnl|bosTau2|chr18 (41901480-41901754) | |
| 689-960, gnl|Hg17|chr19 (41308406-41308682) |
| Expressed library(ies): 26 entry(ies) | More info |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
| cki (0.495704) | |
| ece (0.45861) | |
| amn (0.417711) | |
| cag (0.302389) | |
| che (0.272628) | |
| fce (0.271592) | |
| nms (0.213858) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| pty (0.142714) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| cov (0.132153) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |
| Expressed library(ies): 26 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| cki (0.495704) | |
| ece (0.45861) | |
| amn (0.417711) | |
| cag (0.302389) | |
| che (0.272628) | |
| fce (0.271592) | |
| nms (0.213858) | |
| eje (0.197668) | |
| nlu (0.191681) | |
| ill (0.175593) | |
| duo (0.172801) | |
| mcp (0.170648) | |
| eye (0.170503) | |
| cut (0.169924) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| pty (0.142714) | |
| cst (0.140036) | |
| hlv (0.139256) | |
| nca (0.136874) | |
| cov (0.132153) | |
| eep (0.122564) | |
| eru (0.120048) | |
| cty (0.10408) | |
| nbm (0.0993246) | |
| jej (0.0989218) |