Ss1.1-Pig4-TMW8046K01.5.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AACAAGAAAGATTTCAAGAGATTACTGGAAAGCTTGGGCACTTTCTTAAGCAAGCAGGTT TTAAGGAAAGTGATGTAGCTTTTATCCCTACAAGTGGTCTCAGTGGTGAAAATCTAATCA CAAGATCTAAATCAAGTGAACTTACAAAATGGTATAAAGGACTATGTTTATTAGAACAAA TTGATTCCTTCAAGCCCCCTCAAAGGTCTGTTGATAAGCCTTTTAGATTATGTGTGTCTG ATGTTTTTAAAGATCAAGGATCTGGATTTTGTGTAACTGGTAAAATTGAAGCTGGTTATG TCCAAACTGGTGACCGACTACTAGCAATGCCTCCTAATGAAACTTGCACTGCTAAAGGAA TCACTCTGCATGATGAACCTGTCGACTGGGCAGCAGCGGGCGATCATGTTAGTCTTACGT TGGTTGGGATGGATATCATCAAAATCAATGTTGGCTGCATATTTTGTGGCCCCAAAGAAC CCATTAAGGCTTGCACGCGTTTCAGAGCCCGAATCCTCATCTTTAATATTGAAGTTCCTG TCACTAAAGGATTTCCTGTGCTGTTACACTACCAAACTGTCAGTGAACCCGCCGTTATTA AACGATTGATTAGTGTTTTAAACAAAAGCACCGGTGAAGTGACAAAGAAGAAGCCTAAAT TGTTGACCAAAGGCCAGAATGCATTGGTGGAGCTACAGACACAAAGACCAGTGGCTCTTG AGCTATACAAAGACTTTAAAGAGCTGGGGAGGTTCATGCTTCGCTACAGTGGTTCTACCA TAGCTGCTGGTGTAGTCACTGAGATAAAAGAATGATGGGTCCGAATTTCTATCATGTTTC TAAAATGCAATGAAATAGCCAACCTCCATTTTTAAAGAATCCAGTTATTCAGTTAAAGCA ACAATGTGCAACTGATATTTTTTTAAATGAGAGAGAAAATTAAAGTTATAATCCACTGCA AAGAAGTATTATTCATCACTCCTACAAAAATTTCAAGTTGCCAACGGGCAAAAAAAGGCT AATACTGCACTTTCATTTAAAAAACTAGATTTTCCTTTGAAATGTTAATAAATGGATTTA CCTTGCTGAGATTTATGGAAACTATCAGAAAAATGTGTTAGAAGACATTGAATTATCATG AAGTGAACTCTACTTCCAGCCAAACTACAGAATGTTTACAGTTTTCTCTTTTGATTTTTA ACTCTACGACACATTTTTAAGGAAAAAAAATATTAAAATGGGTTATTAAGGTAGTTAATA TTTGACCTGAGCAGGTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTTTTGGTCAACTC TAAGATTTGCTGAAGGTTAAAATAAAGGTATTTTGTGTTGAGCATAAGAATGTTCCTTCA ACAAGCAACCATTTGAAAGTTTAGTTTGGAATTAGTGGAAATTGTTCTTTGGTAACCAAG ATATTATTTAAGGTGTAAGGCCAGCTAATAAAATGCCTTAGTTTGAGCATAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AACAAGAAAGATTTCAAGAGATTACTGGAAAGCTTGGGCACTTTCTTAAGCAAGCAGGTT TTAAGGAAAGTGATGTAGCTTTTATCCCTACAAGTGGTCTCAGTGGTGAAAATCTAATCA CAAGATCTAAATCAAGTGAACTTACAAAATGGTATAAAGGACTATGTTTATTAGAACAAA TTGATTCCTTCAAGCCCCCTCAAAGGTCTGTTGATAAGCCTTTTAGATTATGTGTGTCTG ATGTTTTTAAAGATCAAGGATCTGGATTTTGTGTAACTGGTAAAATTGAAGCTGGTTATG TCCAAACTGGTGACCGACTACTAGCAATGCCTCCTAATGAAACTTGCACTGCTAAAGGAA TCACTCTGCATGATGAACCTGTCGACTGGGCAGCAGCGGGCGATCATGTTAGTCTTACGT TGGTTGGGATGGATATCATCAAAATCAATGTTGGCTGCATATTTTGTGGCCCCAAAGAAC CCATTAAGGCTTGCACGCGTTTCAGAGCCCGAATCCTCATCTTTAATATTGAAGTTCCTG TCACTAAAGGATTTCCTGTGCTGTTACACTACCAAACTGTCAGTGAACCCGCCGTTATTA AACGATTGATTAGTGTTTTAAACAAAAGCACCGGTGAAGTGACAAAGAAGAAGCCTAAAT TGTTGACCAAAGGCCAGAATGCATTGGTGGAGCTACAGACACAAAGACCAGTGGCTCTTG AGCTATACAAAGACTTTAAAGAGCTGGGGAGGTTCATGCTTCGCTACAGTGGTTCTACCA TAGCTGCTGGTGTAGTCACTGAGATAAAAGAATGATGGGTCCGAATTTCTATCATGTTTC TAAAATGCAATGAAATAGCCAACCTCCATTTTTAAAGAATCCAGTTATTCAGTTAAAGCA ACAATGTGCAACTGATATTTTTTTAAATGAGAGAGAAAATTAAAGTTATAATCCACTGCA AAGAAGTATTATTCATCACTCCTACAAAAATTTCAAGTTGCCAACGGGCAAAAAAAGGCT AATACTGCACTTTCATTTAAAAAACTAGATTTTCCTTTGAAATGTTAATAAATGGATTTA CCTTGCTGAGATTTATGGAAACTATCAGAAAAATGTGTTAGAAGACATTGAATTATCATG AAGTGAACTCTACTTCCAGCCAAACTACAGAATGTTTACAGTTTTCTCTTTTGATTTTTA ACTCTACGACACATTTTTAAGGAAAAAAAATATTAAAATGGGTTATTAAGGTAGTTAATA TTTGACCTGAGCAGGTTTGTTTTTGTTTTTGTTTTTGTTTTTGTTTTTTTTGGTCAACTC TAAGATTTGCTGAAGGTTAAAATAAAGGTATTTTGTGTTGAGCATAAGAATGTTCCTTCA ACAAGCAACCATTTGAAAGTTTAGTTTGGAATTAGTGGAAATTGTTCTTTGGTAACCAAG ATATTATTTAAGGTGTAAGGCCAGCTAATAAAATGCCTTAGTTTGAGCATAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | More info |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
| 59-183, gnl|bosTau2|chr9 (43309938-43310063) | |
| 59-183, gnl|Hg17|chr6 (135349022-135348897) | |
| 59-183, gnl|Mm7|chr10 (21077974-21078099) | |
| 245-370, gnl|bosTau2|chr9 (43313850-43313975) | |
| 245-370, gnl|Hg17|chr6 (135345401-135345276) | |
| 245-370, gnl|Mm7|chr10 (21080686-21080815) | |
| 446-559, gnl|bosTau2|chr9 (43317435-43317548) | |
| 446-559, gnl|canFam2|chr1 (30754969-30755083) | |
| 446-559, gnl|danRer3|chr23 (47414855-47414741) | |
| 446-559, gnl|echTel1|scaffold_291093 (14443-14557) | |
| 446-559, gnl|fr1|chrUn (159160127-159160013) | |
| 446-559, gnl|galGal2|chr3 (54735106-54734992) | |
| 446-559, gnl|hg17|chr6 (135341506-135341620) | |
| 446-559, gnl|Hg17|chr6 (135341621-135341508) | |
| 446-559, gnl|loxAfr1|scaffold_3206 (24178-24064) | |
| 446-559, gnl|mm7|chr10 (21084901-21084787) | |
| 446-559, gnl|Mm7|chr10 (21084784-21084897) | |
| 446-559, gnl|monDom2|scaffold_0 (75793537-75793423) | |
| 446-559, gnl|oryCun1|scaffold_212611 (1906-2020) | |
| 446-559, gnl|rheMac2|chr4 (128870615-128870501) | |
| 446-559, gnl|rn3|chr1 (16718986-16718872) | |
| 446-559, gnl|tetNig1|chr14 (5834681-5834795) | |
| 446-559, gnl|xenTro1|scaffold_422 (1021626-1021512) | |
| 802-1278, gnl|bosTau2|chr9 (43326136-43326606) | |
| 802-1278, gnl|Hg17|chr6 (135328123-135327667) | |
| 802-1278, gnl|Mm7|chr10 (21094342-21094761) | |
| 1306-1500, gnl|bosTau2|chr9 (43326603-43326806) | |
| 1306-1500, gnl|Hg17|chr6 (135327670-135327455) | |
| 1306-1500, gnl|Mm7|chr10 (21094758-21094953) |
| Aligned organism(s): 29 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 59-183, gnl|bosTau2|chr9 (43309938-43310063) | |
| 59-183, gnl|Hg17|chr6 (135349022-135348897) | |
| 59-183, gnl|Mm7|chr10 (21077974-21078099) | |
| 245-370, gnl|bosTau2|chr9 (43313850-43313975) | |
| 245-370, gnl|Hg17|chr6 (135345401-135345276) | |
| 245-370, gnl|Mm7|chr10 (21080686-21080815) | |
| 446-559, gnl|bosTau2|chr9 (43317435-43317548) | |
| 446-559, gnl|canFam2|chr1 (30754969-30755083) | |
| 446-559, gnl|danRer3|chr23 (47414855-47414741) | |
| 446-559, gnl|echTel1|scaffold_291093 (14443-14557) | |
| 446-559, gnl|fr1|chrUn (159160127-159160013) | |
| 446-559, gnl|galGal2|chr3 (54735106-54734992) | |
| 446-559, gnl|hg17|chr6 (135341506-135341620) | |
| 446-559, gnl|Hg17|chr6 (135341621-135341508) | |
| 446-559, gnl|loxAfr1|scaffold_3206 (24178-24064) | |
| 446-559, gnl|mm7|chr10 (21084901-21084787) | |
| 446-559, gnl|Mm7|chr10 (21084784-21084897) | |
| 446-559, gnl|monDom2|scaffold_0 (75793537-75793423) | |
| 446-559, gnl|oryCun1|scaffold_212611 (1906-2020) | |
| 446-559, gnl|rheMac2|chr4 (128870615-128870501) | |
| 446-559, gnl|rn3|chr1 (16718986-16718872) | |
| 446-559, gnl|tetNig1|chr14 (5834681-5834795) | |
| 446-559, gnl|xenTro1|scaffold_422 (1021626-1021512) | |
| 802-1278, gnl|bosTau2|chr9 (43326136-43326606) | |
| 802-1278, gnl|Hg17|chr6 (135328123-135327667) | |
| 802-1278, gnl|Mm7|chr10 (21094342-21094761) | |
| 1306-1500, gnl|bosTau2|chr9 (43326603-43326806) | |
| 1306-1500, gnl|Hg17|chr6 (135327670-135327455) | |
| 1306-1500, gnl|Mm7|chr10 (21094758-21094953) |
| Expressed library(ies): 28 entry(ies) | More info |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
| tbr (0.616713) | |
| sug (0.381874) | |
| fco (0.314416) | |
| bfe (0.299715) | |
| liv (0.292569) | |
| hyp (0.285673) | |
| ste (0.270416) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| sin (0.174948) | |
| nje (0.16592) | |
| mga (0.160205) | |
| lun (0.150489) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| ret (0.128733) | |
| tra (0.123092) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) |
| Expressed library(ies): 28 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| tbr (0.616713) | |
| sug (0.381874) | |
| fco (0.314416) | |
| bfe (0.299715) | |
| liv (0.292569) | |
| hyp (0.285673) | |
| ste (0.270416) | |
| bla (0.248694) | |
| cbe (0.239234) | |
| pan (0.23596) | |
| mas (0.210305) | |
| fcc (0.197785) | |
| mgm (0.180343) | |
| sto (0.179824) | |
| sin (0.174948) | |
| nje (0.16592) | |
| mga (0.160205) | |
| lun (0.150489) | |
| fat (0.147427) | |
| ski (0.146735) | |
| lin (0.145603) | |
| ssp (0.13552) | |
| lyg (0.133103) | |
| ret (0.128733) | |
| tra (0.123092) | |
| eru (0.120048) | |
| ebs (0.118301) | |
| ecc (0.115035) |