Non-Coding RNA Search

Ss1.1-Pig4-TMW8046K10.5

Sequence:


               
               CCAGGTAAAGCTTCAGATGGCCCAGGAGCTTGTGAGGAACGAGATGGAGGAAGCTTCGAC
TCAAGAGGCTAATATAGGGAAGAAAACTGTCATTTGGAAGGAGAAAGTGGAAATACAGAG
GCAACGCTTCAGGTTGGAGTTTGAAAAGTATCGTGGCTTCCTGGCCCTGGAGGAGCAACT
GCAGCTTAGAAGACTGGAGGAGGAGGAGCGAGCCACCCTGCAGAGACTGAGAGAGAGCAA
GAACCAGCTGGTTCAGCACAGCAGGGCCCTGAAGGAGCTGGCAGAAGAGCTGGAGGAGAG
ATGCCAGCGCCCACCCCTGGGTCTGCTAGAGGGTGTGGGAGGAGCCTTGAACCGAAGTAA
GAGTGTCACACGACTGGAGCCAGAGATCATTCCCATGGAGTTGAAGACAATGTGTCGCAT
CCCTGGGATGAGGGAAATGTTGAGAAAGTTCCAAGAAAAACCTGTGGACTTCCTGAGTGG
ACTTGAGGAACAGCCTCTTGAGAAGGGTGGACTTGAAGAAAAACATCTGTACTGTTACCA
GTATTCCTGCCTCTGAAAAAAATGCCTCAAAGATAAAAAATTTTTAAAAAAAAGAAGAAT
TTTGCATAACTCAAAGGAAAGAAAATAATCCATGTATATTCTGGTGAGTGATTTCCATTG
TTGTTTTCTCAGTTAAGGAATAAAATTCAACTGAGTGAATTTTAAAGATCTTTTTGGATT
TATTCAGTGATTCATGAATTTGGCAGCATATCTTTAGCAGAGAAAAAGTGGCTAAAAAGC
TGTATAAAAATAGAAAACTTGTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCAGGTAAAGCTTCAGATGGCCCAGGAGCTTGTGAGGAACGAGATGGAGGAAGCTTCGAC
TCAAGAGGCTAATATAGGGAAGAAAACTGTCATTTGGAAGGAGAAAGTGGAAATACAGAG
GCAACGCTTCAGGTTGGAGTTTGAAAAGTATCGTGGCTTCCTGGCCCTGGAGGAGCAACT
GCAGCTTAGAAGACTGGAGGAGGAGGAGCGAGCCACCCTGCAGAGACTGAGAGAGAGCAA
GAACCAGCTGGTTCAGCACAGCAGGGCCCTGAAGGAGCTGGCAGAAGAGCTGGAGGAGAG
ATGCCAGCGCCCACCCCTGGGTCTGCTAGAGGGTGTGGGAGGAGCCTTGAACCGAAGTAA
GAGTGTCACACGACTGGAGCCAGAGATCATTCCCATGGAGTTGAAGACAATGTGTCGCAT
CCCTGGGATGAGGGAAATGTTGAGAAAGTTCCAAGAAAAACCTGTGGACTTCCTGAGTGG
ACTTGAGGAACAGCCTCTTGAGAAGGGTGGACTTGAAGAAAAACATCTGTACTGTTACCA
GTATTCCTGCCTCTGAAAAAAATGCCTCAAAGATAAAAAATTTTTAAAAAAAAGAAGAAT
TTTGCATAACTCAAAGGAAAGAAAATAATCCATGTATATTCTGGTGAGTGATTTCCATTG
TTGTTTTCTCAGTTAAGGAATAAAATTCAACTGAGTGAATTTTAAAGATCTTTTTGGATT
TATTCAGTGATTCATGAATTTGGCAGCATATCTTTAGCAGAGAAAAAGTGGCTAAAAAGC
TGTATAAAAATAGAAAACTTGTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               218-371, + strand, RNAz p=0.999912

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               218-371, + strand, RNAz p=0.999912

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               235-361, - strand, RNAmicro p=0.99989

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               235-361, - strand, RNAmicro p=0.99989

Aligned organism(s): 4 entry(ies)

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Aligned organism(s): 4 entry(ies)

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               99-371, gnl|bosTau2|chr7 (27295988-27296258)
               

               
               99-371, gnl|Hg17|chr1 (244354046-244354309)
               

               
               99-371, gnl|Mm7|chr11 (58727439-58727711)
               


               
               456-789, gnl|bosTau2|chr7 (27317983-27318295)

Aligned organism(s): 4 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               99-371, gnl|bosTau2|chr7 (27295988-27296258)
               

               
               99-371, gnl|Hg17|chr1 (244354046-244354309)
               

               
               99-371, gnl|Mm7|chr11 (58727439-58727711)
               


               
               456-789, gnl|bosTau2|chr7 (27317983-27318295)

Expressed library(ies): 2 entry(ies)

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Expressed library(ies): 2 entry(ies)

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               fty (0.17584)
               

               
               eli (0.151814)

Expressed library(ies): 2 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               fty (0.17584)
               

               
               eli (0.151814)

	99-371, gnl\|bosTau2\|chr7 (27295988-27296258)
	99-371, gnl\|Hg17\|chr1 (244354046-244354309)
	99-371, gnl\|Mm7\|chr11 (58727439-58727711)

	456-789, gnl\|bosTau2\|chr7 (27317983-27318295)