Non-Coding RNA Search

Ss1.1-Pig4-TMW8046L01.3

Sequence:


               
               GCGGCTGGCGAGTGAGTGGCCGCCGCTGCGGCGGGGAGCAGGGCCATGGAGAAGCTGCGG
CGGGTCCTGAGCGGCCAGGACGACGAGGAGCAGGGCCTGACTGCGCAGGTCCTGGATGCC
TCGACCCTTAGTTTCAACACCAGGCTGAAGTGGTTCGTCATATGCTTCGTAAGCGGCATC
TTCTTCTCTTTTCTTGGAACTGGATTGCTGTGGCTTCCTGGTGGCATAAAGCTTTTTGCA
GTATTTTATACCTTTGGAAATATTGCTGCCTTAGCCAGTACTTGCTTTTTAATGGGCCCC
GTGAAGCAGCTCAAGAAGATGTTCGAAACGACGCGGTTGCTGGCGACGATTGTAATGATC
TTGTGTTTGGTACTTACCCTGTGTGCTGCTCTTTGGTGGCGCAAGAAGGGACTGGCCTTA
TTATTCTGCATATTGCAGTTCTTGTCGCTGACCTGGTACAGTCTCTCCTACATCCCGTAC
GCACGGGATGCAGTAATTAAATGCTGTTCTTCTCTCCTGAGTTGAACATCAGAAACTGAA
AAGGCCACTGGAAAGTTGATATTCTGATTTGAGCAAAGTATGCATTTCCTGATGCAATAA
TCACTCCGAAAACCACTGCACTGACCTGACCATTTGAGACCATTTTGTATATTGATAAAA
ACTACATGCCGATTAAAACTGTTAAATGCTTGTGAAACGTTAAATTCATTATGTGTCATT
AATGTGCTCTTCCGAAGGTAGATTTTAATCATTGCCTATTGTAAATGATTTTTAGCCAGT
TTTTAATCTTTTCTAAACACATTTGAGATGTGAATATTTGCAGATAAACCTATGCTGCAA
GATATACTCAGCTTTTTGGATGGTTTTTAAATCTACATTTTAAAAAAAATCTTTAAAATA
AAAACTTGTGTAAGGTTTTACTTTAAGCTAAAAATTGCTTATTATGTGTAATAGAAGTAA
TATATATACATCTTTATAATTTTGAAATAAACCCACACTTGGAAAATAAAAAAAAAAAAA
AAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTGGCGAGTGAGTGGCCGCCGCTGCGGCGGGGAGCAGGGCCATGGAGAAGCTGCGG
CGGGTCCTGAGCGGCCAGGACGACGAGGAGCAGGGCCTGACTGCGCAGGTCCTGGATGCC
TCGACCCTTAGTTTCAACACCAGGCTGAAGTGGTTCGTCATATGCTTCGTAAGCGGCATC
TTCTTCTCTTTTCTTGGAACTGGATTGCTGTGGCTTCCTGGTGGCATAAAGCTTTTTGCA
GTATTTTATACCTTTGGAAATATTGCTGCCTTAGCCAGTACTTGCTTTTTAATGGGCCCC
GTGAAGCAGCTCAAGAAGATGTTCGAAACGACGCGGTTGCTGGCGACGATTGTAATGATC
TTGTGTTTGGTACTTACCCTGTGTGCTGCTCTTTGGTGGCGCAAGAAGGGACTGGCCTTA
TTATTCTGCATATTGCAGTTCTTGTCGCTGACCTGGTACAGTCTCTCCTACATCCCGTAC
GCACGGGATGCAGTAATTAAATGCTGTTCTTCTCTCCTGAGTTGAACATCAGAAACTGAA
AAGGCCACTGGAAAGTTGATATTCTGATTTGAGCAAAGTATGCATTTCCTGATGCAATAA
TCACTCCGAAAACCACTGCACTGACCTGACCATTTGAGACCATTTTGTATATTGATAAAA
ACTACATGCCGATTAAAACTGTTAAATGCTTGTGAAACGTTAAATTCATTATGTGTCATT
AATGTGCTCTTCCGAAGGTAGATTTTAATCATTGCCTATTGTAAATGATTTTTAGCCAGT
TTTTAATCTTTTCTAAACACATTTGAGATGTGAATATTTGCAGATAAACCTATGCTGCAA
GATATACTCAGCTTTTTGGATGGTTTTTAAATCTACATTTTAAAAAAAATCTTTAAAATA
AAAACTTGTGTAAGGTTTTACTTTAAGCTAAAAATTGCTTATTATGTGTAATAGAAGTAA
TATATATACATCTTTATAATTTTGAAATAAACCCACACTTGGAAAATAAAAAAAAAAAAA
AAAAAAAAAAAA

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|56206986|emb|CAI25035.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|56206986|emb|CAI25035.1|

Aligned organism(s): 2 entry(ies)

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Aligned organism(s): 2 entry(ies)

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               46-1015, gnl|bosTau2|chr15 (17441485-17440543)
               

               
               46-1015, gnl|Mm7|chr11 (46009047-46008114)

Aligned organism(s): 2 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               46-1015, gnl|bosTau2|chr15 (17441485-17440543)
               

               
               46-1015, gnl|Mm7|chr11 (46009047-46008114)

Expressed library(ies): 52 entry(ies)

More info

Expressed library(ies): 52 entry(ies)

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               mga (1.28164)
               

               
               rec (1.03842)
               

               
               pro (1.02407)
               

               
               thg (0.760746)
               

               
               mgm (0.721371)
               

               
               mgp (0.692042)
               

               
               lyg (0.665513)
               

               
               vin (0.665115)
               

               
               cki (0.660939)
               

               
               spc (0.566829)
               

               
               sin (0.524843)
               

               
               tbr (0.462535)
               

               
               isp (0.451128)
               

               
               spl (0.429553)
               

               
               cst (0.420109)
               

               
               col (0.390016)
               

               
               kid (0.389206)
               

               
               ova (0.387397)
               

               
               tra (0.369276)
               

               
               cut (0.339847)
               

               
               cje (0.330469)
               

               
               csp (0.322373)
               

               
               fco (0.314416)
               

               
               jej (0.296765)
               

               
               fat (0.294855)
               

               
               lin (0.291206)
               

               
               ese (0.253004)
               

               
               pan (0.23596)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

Expressed library(ies): 52 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               mga (1.28164)
               

               
               rec (1.03842)
               

               
               pro (1.02407)
               

               
               thg (0.760746)
               

               
               mgm (0.721371)
               

               
               mgp (0.692042)
               

               
               lyg (0.665513)
               

               
               vin (0.665115)
               

               
               cki (0.660939)
               

               
               spc (0.566829)
               

               
               sin (0.524843)
               

               
               tbr (0.462535)
               

               
               isp (0.451128)
               

               
               spl (0.429553)
               

               
               cst (0.420109)
               

               
               col (0.390016)
               

               
               kid (0.389206)
               

               
               ova (0.387397)
               

               
               tra (0.369276)
               

               
               cut (0.339847)
               

               
               cje (0.330469)
               

               
               csp (0.322373)
               

               
               fco (0.314416)
               

               
               jej (0.296765)
               

               
               fat (0.294855)
               

               
               lin (0.291206)
               

               
               ese (0.253004)
               

               
               pan (0.23596)
               

               
               jca (0.22792)
               

               
               fli (0.202881)
               

               
               aor (0.195274)
               

               
               sto (0.179824)
               

               
               gul (0.177588)
               

               
               fty (0.17584)
               

               
               ill (0.175593)
               

               
               ton (0.1755)
               

               
               fbs (0.175346)
               

               
               fhi (0.169578)
               

               
               nje (0.16592)
               

               
               bfe (0.149858)
               

               
               ski (0.146735)
               

               
               liv (0.146284)
               

               
               hyp (0.142837)
               

               
               lnt (0.142308)
               

               
               csk (0.140746)
               

               
               hlv (0.139256)
               

               
               ssp (0.13552)
               

               
               ste (0.135208)
               

               
               pla (0.133672)
               

               
               ute (0.132784)
               

               
               sug (0.127291)
               

               
               bla (0.124347)

	46-1015, gnl\|bosTau2\|chr15 (17441485-17440543)
	46-1015, gnl\|Mm7\|chr11 (46009047-46008114)

	mga (1.28164)
	rec (1.03842)
	pro (1.02407)
	thg (0.760746)
	mgm (0.721371)
	mgp (0.692042)
	lyg (0.665513)
	vin (0.665115)
	cki (0.660939)
	spc (0.566829)
	sin (0.524843)
	tbr (0.462535)
	isp (0.451128)
	spl (0.429553)
	cst (0.420109)
	col (0.390016)
	kid (0.389206)
	ova (0.387397)
	tra (0.369276)
	cut (0.339847)
	cje (0.330469)
	csp (0.322373)
	fco (0.314416)
	jej (0.296765)
	fat (0.294855)
	lin (0.291206)
	ese (0.253004)
	pan (0.23596)
	jca (0.22792)
	fli (0.202881)
	aor (0.195274)
	sto (0.179824)
	gul (0.177588)
	fty (0.17584)
	ill (0.175593)
	ton (0.1755)
	fbs (0.175346)
	fhi (0.169578)
	nje (0.16592)
	bfe (0.149858)
	ski (0.146735)
	liv (0.146284)
	hyp (0.142837)
	lnt (0.142308)
	csk (0.140746)
	hlv (0.139256)
	ssp (0.13552)
	ste (0.135208)
	pla (0.133672)
	ute (0.132784)
	sug (0.127291)
	bla (0.124347)