Ss1.1-Pig4-TMW8046L02.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GGAGCCGCCGATGGCTGTGGGGGCTGGCTGCGCGGCGGTCCGCGGCTGCGGGCGAGTTTT AAAAAGAGCATTTTCGCTGCATAAAGCACACTCAGTGAAGGATATGGAAAATACTTTACA GTTGGTGAGAAACATCATCCCTCCTCTAACCACCAAGAAGCACAAAGGGCAAGACGGGAG GATAGGCGTGGTCGGAGGCTGCCGAGAGTACACGGGAGCCCCCTATTTTGCAGCAATCTC GGCTCTCAAGGTGGGCGCGGATCTGTCCCACGTGTTCTGCACCCAGGAGGCCGCGCCCGT GATCAAGTCCTACAGCCCGGAGCTGATCGTCCACCCGGTTCTTGACAGCCCCGATGCCGC CCGCGCCGTGGGAGAGTGGCTGCCCCGCCTGCACGCCCTGGTCGTGGGGCCTGGCTTAGG CAGAGACCACGTCCTCCTGGAAAACGTCAAGGGCATTTTAGAAGCGTCGAAGGCCAGGGG CGTCCCCGTCGTCATCGACGCGGACGGGCTGTGGCTGATCGCGCAGGAGCCGGCCCTCGT CCAAGGCTACCAGAAGGCCGTTCTCACCCCCAACCACGTGGAGTTCAGCAGACTCTCCGA GGCCGTGCTGGGAGACCCCCTGGATGGCAGGGACCGCCGTGGAGCCGTGCTGAGACTCAG CCAGGCCCTGGGGAACGTCACCGTGGTCCAGAAGGGGGAGCAGGATGTGATCTCCGATGG CACACAGGTGCTCGAGTGCAGCCACGAGGGCAGCAGCCGCAGGTGTGGGGGGCAGGGGGA CCTCCTGTCGGGCTCCCTGGGCGTCCTGGTGCACTGGGCCCTCCAGGCCGGCCCCAGCAA GACAGATGGGCCCAGCTCCCTCCTCGTGGCTGCCTTGGGCGCGTGCGCTCTCACGCGGCA GTGCAGCCGCCAGGCCTTCCAGAAGCACGGCCGCTCCACCACCACGACCGACATGATTGC GGAGCTCGGGCCCGCCTTCAGCCGCCTCTTCGAAGACTGAGCCGCCCCGCACCGACGGGA ACCCACCCACGGGAACCCACCGGCTCTGCGTCTGGGCCGCGCAGGCGGATGGAGGCAGCA TCGGCATTGGGGACTCGGCACTCGGCTCAGACTCACGTGCACGCGGGGTGTTAAGATGGG AAACAACGCACCCCGACCTTTCCTGGCTTCTCAGCCGTGTCAGAAAAGCACGATGGGAAC CGCAGGAGGCGGCGGCCCGCCGAGGGTCAGCAGCGCTGCTTCTTCCCACAGGAGAGGCTC CCCTCGACGGGTGCTCCCCTCAGAGGAATCCACCCTCATTCGCAGTGCTTTCTAACTTGA GGTCCCCAAAGGAGGTGGTGCCATTCATTTAGCTCATTTCTGTTTAGTGATTAGGTTGGA AGTACCTGGGCAGAAATATTAAGCATGGGCTTTTTGGTTAATTGAAATATTTCGGGATAA TCAGTGGTCTGCTGGAACCTAGAAATCCTTTGGGGGCACCTGGGAAGTCACAGGAGGAGG TGAGGGGGCCCTGACTCCAAGCATGGGGCTGGGTGGGACTCCGGGATGCCTCCCACTCCC ACCTGTGTGTGTCTGTGCACAGGTCACACGGTTGGCGGGCACCTAGGCTCCGAGCGCAGG GTCTGGTGGAGGTGGCCTCATGGGGTCCTGATGCCATCCTGCCTGCTGCCGCCAGGGCCC TCTGCTCCCACAGGCCAAGGCCCGAGCAGTGTCCCCGTCCCGTTGCTGGGTCAGCTCGTG CGTGCTTGTCTGCAGGAGGGGAGGGTGTCTCGGTGGCTGGGTTACTTTCTGCTGTTGCCT TTCTCTGCGGGGCGGGTCCCAGCGCAGCCTCTGACTGCGTTTGATGATGTTTGATGATGC CTTCTGCAGGCGGCCCGCGCTGTGCCGCGCTGTGGTCAGACGCCTCCCCCGAAGGCGCCC TTCTTTAAACAGCTGTGAGCGCTGTAAGTTCACGTCTGTGTGTAGAAAAGCTTCGCTATC ATCGTATGGGGACTTCTCCAGAAAACACGTCAGGGACGTTCTCGCCTTCGGAGAATCACA CCTGCGTCGTGGTGACTATTAAAGGTTTGTTTCAAAGAAAAAAAAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GGAGCCGCCGATGGCTGTGGGGGCTGGCTGCGCGGCGGTCCGCGGCTGCGGGCGAGTTTT AAAAAGAGCATTTTCGCTGCATAAAGCACACTCAGTGAAGGATATGGAAAATACTTTACA GTTGGTGAGAAACATCATCCCTCCTCTAACCACCAAGAAGCACAAAGGGCAAGACGGGAG GATAGGCGTGGTCGGAGGCTGCCGAGAGTACACGGGAGCCCCCTATTTTGCAGCAATCTC GGCTCTCAAGGTGGGCGCGGATCTGTCCCACGTGTTCTGCACCCAGGAGGCCGCGCCCGT GATCAAGTCCTACAGCCCGGAGCTGATCGTCCACCCGGTTCTTGACAGCCCCGATGCCGC CCGCGCCGTGGGAGAGTGGCTGCCCCGCCTGCACGCCCTGGTCGTGGGGCCTGGCTTAGG CAGAGACCACGTCCTCCTGGAAAACGTCAAGGGCATTTTAGAAGCGTCGAAGGCCAGGGG CGTCCCCGTCGTCATCGACGCGGACGGGCTGTGGCTGATCGCGCAGGAGCCGGCCCTCGT CCAAGGCTACCAGAAGGCCGTTCTCACCCCCAACCACGTGGAGTTCAGCAGACTCTCCGA GGCCGTGCTGGGAGACCCCCTGGATGGCAGGGACCGCCGTGGAGCCGTGCTGAGACTCAG CCAGGCCCTGGGGAACGTCACCGTGGTCCAGAAGGGGGAGCAGGATGTGATCTCCGATGG CACACAGGTGCTCGAGTGCAGCCACGAGGGCAGCAGCCGCAGGTGTGGGGGGCAGGGGGA CCTCCTGTCGGGCTCCCTGGGCGTCCTGGTGCACTGGGCCCTCCAGGCCGGCCCCAGCAA GACAGATGGGCCCAGCTCCCTCCTCGTGGCTGCCTTGGGCGCGTGCGCTCTCACGCGGCA GTGCAGCCGCCAGGCCTTCCAGAAGCACGGCCGCTCCACCACCACGACCGACATGATTGC GGAGCTCGGGCCCGCCTTCAGCCGCCTCTTCGAAGACTGAGCCGCCCCGCACCGACGGGA ACCCACCCACGGGAACCCACCGGCTCTGCGTCTGGGCCGCGCAGGCGGATGGAGGCAGCA TCGGCATTGGGGACTCGGCACTCGGCTCAGACTCACGTGCACGCGGGGTGTTAAGATGGG AAACAACGCACCCCGACCTTTCCTGGCTTCTCAGCCGTGTCAGAAAAGCACGATGGGAAC CGCAGGAGGCGGCGGCCCGCCGAGGGTCAGCAGCGCTGCTTCTTCCCACAGGAGAGGCTC CCCTCGACGGGTGCTCCCCTCAGAGGAATCCACCCTCATTCGCAGTGCTTTCTAACTTGA GGTCCCCAAAGGAGGTGGTGCCATTCATTTAGCTCATTTCTGTTTAGTGATTAGGTTGGA AGTACCTGGGCAGAAATATTAAGCATGGGCTTTTTGGTTAATTGAAATATTTCGGGATAA TCAGTGGTCTGCTGGAACCTAGAAATCCTTTGGGGGCACCTGGGAAGTCACAGGAGGAGG TGAGGGGGCCCTGACTCCAAGCATGGGGCTGGGTGGGACTCCGGGATGCCTCCCACTCCC ACCTGTGTGTGTCTGTGCACAGGTCACACGGTTGGCGGGCACCTAGGCTCCGAGCGCAGG GTCTGGTGGAGGTGGCCTCATGGGGTCCTGATGCCATCCTGCCTGCTGCCGCCAGGGCCC TCTGCTCCCACAGGCCAAGGCCCGAGCAGTGTCCCCGTCCCGTTGCTGGGTCAGCTCGTG CGTGCTTGTCTGCAGGAGGGGAGGGTGTCTCGGTGGCTGGGTTACTTTCTGCTGTTGCCT TTCTCTGCGGGGCGGGTCCCAGCGCAGCCTCTGACTGCGTTTGATGATGTTTGATGATGC CTTCTGCAGGCGGCCCGCGCTGTGCCGCGCTGTGGTCAGACGCCTCCCCCGAAGGCGCCC TTCTTTAAACAGCTGTGAGCGCTGTAAGTTCACGTCTGTGTGTAGAAAAGCTTCGCTATC ATCGTATGGGGACTTCTCCAGAAAACACGTCAGGGACGTTCTCGCCTTCGGAGAATCACA CCTGCGTCGTGGTGACTATTAAAGGTTTGTTTCAAAGAAAAAAAAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 55-210, gnl|bosTau2|chr12 (45852515-45852670) | |
| 55-210, gnl|Hg17|chr13 (110072562-110072717) | |
| 55-210, gnl|Mm7|chr8 (11470631-11470786) | |
| 344-452, gnl|bosTau2|chr12 (45855013-45855121) | |
| 344-452, gnl|canFam2|chr22 (61845906-61846004) | |
| 344-452, gnl|danRer3|chr9 (8437464-8437559) | |
| 344-452, gnl|dasNov1|scaffold_24205 (723-625) | |
| 344-452, gnl|echTel1|scaffold_291364 (48454-48377) | |
| 344-452, gnl|hg17|chr13 (110077765-110077863) | |
| 344-452, gnl|Hg17|chr13 (110077788-110077896) | |
| 344-452, gnl|mm7|chr8 (11474700-11474794) | |
| 344-452, gnl|Mm7|chr8 (11474719-11474827) | |
| 344-452, gnl|monDom2|scaffold_11 (36447380-36447288) | |
| 344-452, gnl|panTro1|chr14 (93519335-93519433) | |
| 344-452, gnl|rheMac2|chr17 (90686466-90686564) | |
| 344-452, gnl|rn3|chr16 (82832592-82832497) | |
| 344-452, gnl|tetNig1|chr2 (9423461-9423371) | |
| 344-452, gnl|xenTro1|scaffold_998 (25506-25588) | |
| 607-728, gnl|bosTau2|chr12 (45858316-45858437) | |
| 607-728, gnl|Hg17|chr13 (110085815-110085936) | |
| 607-728, gnl|Mm7|chr8 (11478237-11478358) | |
| 849-1004, gnl|bosTau2|chr12 (45860972-45861127) | |
| 849-1004, gnl|canFam2|chr22 (61854910-61855083) | |
| 849-1004, gnl|danRer3|chr9 (8450141-8450300) | |
| 849-1004, gnl|dasNov1|scaffold_9004 (46698-46873) | |
| 849-1004, gnl|echTel1|scaffold_48769 (923-747) | |
| 849-1004, gnl|galGal2|chr1 (132162848-132163020) | |
| 849-1004, gnl|hg17|chr13 (110088712-110088889) | |
| 849-1004, gnl|Hg17|chr13 (110088725-110088880) | |
| 849-1004, gnl|loxAfr1|scaffold_16158 (14922-14747) | |
| 849-1004, gnl|mm7|chr8 (11480890-11481069) | |
| 849-1004, gnl|Mm7|chr8 (11480905-11481060) | |
| 849-1004, gnl|monDom2|scaffold_11 (36413041-36412881) | |
| 849-1004, gnl|oryCun1|scaffold_111302 (1662-1494) | |
| 849-1004, gnl|panTro1|chr14 (93530258-93530435) | |
| 849-1004, gnl|rheMac2|chr17 (90697939-90698116) | |
| 849-1004, gnl|rn3|chr16 (82826522-82826343) | |
| 849-1004, gnl|tetNig1|chr2 (9422192-9422058) | |
| 849-1004, gnl|xenTro1|scaffold_998 (30471-30645) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 55-210, gnl|bosTau2|chr12 (45852515-45852670) | |
| 55-210, gnl|Hg17|chr13 (110072562-110072717) | |
| 55-210, gnl|Mm7|chr8 (11470631-11470786) | |
| 344-452, gnl|bosTau2|chr12 (45855013-45855121) | |
| 344-452, gnl|canFam2|chr22 (61845906-61846004) | |
| 344-452, gnl|danRer3|chr9 (8437464-8437559) | |
| 344-452, gnl|dasNov1|scaffold_24205 (723-625) | |
| 344-452, gnl|echTel1|scaffold_291364 (48454-48377) | |
| 344-452, gnl|hg17|chr13 (110077765-110077863) | |
| 344-452, gnl|Hg17|chr13 (110077788-110077896) | |
| 344-452, gnl|mm7|chr8 (11474700-11474794) | |
| 344-452, gnl|Mm7|chr8 (11474719-11474827) | |
| 344-452, gnl|monDom2|scaffold_11 (36447380-36447288) | |
| 344-452, gnl|panTro1|chr14 (93519335-93519433) | |
| 344-452, gnl|rheMac2|chr17 (90686466-90686564) | |
| 344-452, gnl|rn3|chr16 (82832592-82832497) | |
| 344-452, gnl|tetNig1|chr2 (9423461-9423371) | |
| 344-452, gnl|xenTro1|scaffold_998 (25506-25588) | |
| 607-728, gnl|bosTau2|chr12 (45858316-45858437) | |
| 607-728, gnl|Hg17|chr13 (110085815-110085936) | |
| 607-728, gnl|Mm7|chr8 (11478237-11478358) | |
| 849-1004, gnl|bosTau2|chr12 (45860972-45861127) | |
| 849-1004, gnl|canFam2|chr22 (61854910-61855083) | |
| 849-1004, gnl|danRer3|chr9 (8450141-8450300) | |
| 849-1004, gnl|dasNov1|scaffold_9004 (46698-46873) | |
| 849-1004, gnl|echTel1|scaffold_48769 (923-747) | |
| 849-1004, gnl|galGal2|chr1 (132162848-132163020) | |
| 849-1004, gnl|hg17|chr13 (110088712-110088889) | |
| 849-1004, gnl|Hg17|chr13 (110088725-110088880) | |
| 849-1004, gnl|loxAfr1|scaffold_16158 (14922-14747) | |
| 849-1004, gnl|mm7|chr8 (11480890-11481069) | |
| 849-1004, gnl|Mm7|chr8 (11480905-11481060) | |
| 849-1004, gnl|monDom2|scaffold_11 (36413041-36412881) | |
| 849-1004, gnl|oryCun1|scaffold_111302 (1662-1494) | |
| 849-1004, gnl|panTro1|chr14 (93530258-93530435) | |
| 849-1004, gnl|rheMac2|chr17 (90697939-90698116) | |
| 849-1004, gnl|rn3|chr16 (82826522-82826343) | |
| 849-1004, gnl|tetNig1|chr2 (9422192-9422058) | |
| 849-1004, gnl|xenTro1|scaffold_998 (30471-30645) |
| Expressed library(ies): 15 entry(ies) | More info |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
| fli (0.405762) | |
| cov (0.396458) | |
| jca (0.34188) | |
| ese (0.253004) | |
| eru (0.240096) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| cag (0.151194) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cty (0.10408) | |
| jej (0.0989218) |
| Expressed library(ies): 15 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| fli (0.405762) | |
| cov (0.396458) | |
| jca (0.34188) | |
| ese (0.253004) | |
| eru (0.240096) | |
| nep (0.183925) | |
| ton (0.1755) | |
| fhi (0.169578) | |
| eli (0.151814) | |
| cag (0.151194) | |
| pgl (0.118483) | |
| ebs (0.118301) | |
| med (0.116252) | |
| cty (0.10408) | |
| jej (0.0989218) |