Ss1.1-Pig4-TMW8046L03.3
|
GTCGCCGCGGTTCCTTGGAAGCAGAAACTCCCCTCCCCTCCCCGCCCCCCCGGTCCCAGT
CCCCGTCCAGCCGCTGAAGTGAAGATGAGCAGCTCAGAGGAGGTGTCCTGGATTTCCTGG
TTCTGTGGGCTCCGTGGCAATGAATTCTTCTGTGAAGTGGATGAAGACTACATCCAGGAC
AAATTCAATCTCACTGGACTCAACGAGCAGGTGCCTCATTATCGACAAGCCCTAGACATG
ATCTTGGACCTGGAACCTGATGAGGAGCTGGAAGACAACCCCAACCAGAGTGACCTGATT
GAGCAGGCAGCCGAAATGCTCTATGGATTGATCCACGCCCGCTATATCCTCACCAACCGT
GGCATCGCCCAGATGTTGGAAAAGTACCAGCAGGGAGACTTTGGCTACTGTCCCCGTGTG
TACTGTGAGAACCAGCCAATGCTTCCCATCGGCCTTTCGGACATCCCAGGCGAGGCCATG
GTGAAGCTCTACTGCCCCAAGTGCATGGACGTGTACACGCCCAAGTCATCGAGGCACCAC
CACACGGATGGCGCCTACTTCGGCACCGGTTTCCCTCACATGCTCTTCATGGTGCACCCC
GAGTACCGGCCCAAACGGCCTGCCAACCAGTTTGTGCCCAGGCTCTACGGTTTCAAGATC
CATCCAATGGCCTACCAGCTGCAGCTCCAAGCCGCCAGCAACTTCAAGAGCCCGGTCAAG
ACAATTCGCTGATTCCCCATCCCACCCGTCCCTCAGTCTTTGACACTTTCGTTCTTTCGC
TGCCACCCTTTCAGGAACCCTCTATGGTTTTTAGTTTAAATTAAAGGAGTCGTTATTGTG
GTGGGAACATGAAATAAAGTGTAAGAAAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GTCGCCGCGGTTCCTTGGAAGCAGAAACTCCCCTCCCCTCCCCGCCCCCCCGGTCCCAGT
CCCCGTCCAGCCGCTGAAGTGAAGATGAGCAGCTCAGAGGAGGTGTCCTGGATTTCCTGG
TTCTGTGGGCTCCGTGGCAATGAATTCTTCTGTGAAGTGGATGAAGACTACATCCAGGAC
AAATTCAATCTCACTGGACTCAACGAGCAGGTGCCTCATTATCGACAAGCCCTAGACATG
ATCTTGGACCTGGAACCTGATGAGGAGCTGGAAGACAACCCCAACCAGAGTGACCTGATT
GAGCAGGCAGCCGAAATGCTCTATGGATTGATCCACGCCCGCTATATCCTCACCAACCGT
GGCATCGCCCAGATGTTGGAAAAGTACCAGCAGGGAGACTTTGGCTACTGTCCCCGTGTG
TACTGTGAGAACCAGCCAATGCTTCCCATCGGCCTTTCGGACATCCCAGGCGAGGCCATG
GTGAAGCTCTACTGCCCCAAGTGCATGGACGTGTACACGCCCAAGTCATCGAGGCACCAC
CACACGGATGGCGCCTACTTCGGCACCGGTTTCCCTCACATGCTCTTCATGGTGCACCCC
GAGTACCGGCCCAAACGGCCTGCCAACCAGTTTGTGCCCAGGCTCTACGGTTTCAAGATC
CATCCAATGGCCTACCAGCTGCAGCTCCAAGCCGCCAGCAACTTCAAGAGCCCGGTCAAG
ACAATTCGCTGATTCCCCATCCCACCCGTCCCTCAGTCTTTGACACTTTCGTTCTTTCGC
TGCCACCCTTTCAGGAACCCTCTATGGTTTTTAGTTTAAATTAAAGGAGTCGTTATTGTG
GTGGGAACATGAAATAAAGTGTAAGAAAAGGCAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
259-378, gnl|bosTau2|chr23 (23328509-23328628) |
|
259-378, gnl|canFam2|chr12 (4155651-4155789) |
|
259-378, gnl|danRer3|chrNA (18988488-18988350) |
|
259-378, gnl|dasNov1|scaffold_15034 (24567-24700) |
|
259-378, gnl|echTel1|scaffold_172145 (510-648) |
|
259-378, gnl|fr1|chrUn (267106089-267105951) |
|
259-378, gnl|hg17|chr6 (31744286-31744424) |
|
259-378, gnl|Hg17|chr6 (31744294-31744413) |
|
259-378, gnl|loxAfr1|scaffold_98215 (910-1048) |
|
259-378, gnl|mm7|chr17 (33215675-33215540) |
|
259-378, gnl|Mm7|chr17 (33215665-33215546) |
|
259-378, gnl|monDom2|scaffold_42 (17751385-17751247) |
|
259-378, gnl|oryCun1|scaffold_212348 (152085-152200) |
|
259-378, gnl|panTro1|chr5 (32143685-32143823) |
|
259-378, gnl|rheMac2|chr4 (31312789-31312927) |
|
259-378, gnl|rn3|chr20 (3767241-3767376) |
|
259-378, gnl|tetNig1|chr8 (6265444-6265322) |
|
259-378, gnl|xenTro1|scaffold_547 (83386-83511) |
| |
|
637-872, gnl|bosTau2|chr23 (23329944-23330179) |
|
637-872, gnl|Hg17|chr6 (31745587-31745821) |
|
637-872, gnl|Mm7|chr17 (33213520-33213290) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
259-378, gnl|bosTau2|chr23 (23328509-23328628) |
|
259-378, gnl|canFam2|chr12 (4155651-4155789) |
|
259-378, gnl|danRer3|chrNA (18988488-18988350) |
|
259-378, gnl|dasNov1|scaffold_15034 (24567-24700) |
|
259-378, gnl|echTel1|scaffold_172145 (510-648) |
|
259-378, gnl|fr1|chrUn (267106089-267105951) |
|
259-378, gnl|hg17|chr6 (31744286-31744424) |
|
259-378, gnl|Hg17|chr6 (31744294-31744413) |
|
259-378, gnl|loxAfr1|scaffold_98215 (910-1048) |
|
259-378, gnl|mm7|chr17 (33215675-33215540) |
|
259-378, gnl|Mm7|chr17 (33215665-33215546) |
|
259-378, gnl|monDom2|scaffold_42 (17751385-17751247) |
|
259-378, gnl|oryCun1|scaffold_212348 (152085-152200) |
|
259-378, gnl|panTro1|chr5 (32143685-32143823) |
|
259-378, gnl|rheMac2|chr4 (31312789-31312927) |
|
259-378, gnl|rn3|chr20 (3767241-3767376) |
|
259-378, gnl|tetNig1|chr8 (6265444-6265322) |
|
259-378, gnl|xenTro1|scaffold_547 (83386-83511) |
| |
|
637-872, gnl|bosTau2|chr23 (23329944-23330179) |
|
637-872, gnl|Hg17|chr6 (31745587-31745821) |
|
637-872, gnl|Mm7|chr17 (33213520-33213290) |
|
col (0.585023) |
|
cly (0.482567) |
|
ece (0.45861) |
|
nms (0.427716) |
|
fty (0.351679) |
|
rec (0.346141) |
|
nbm (0.297974) |
|
jej (0.296765) |
|
eje (0.296501) |
|
eru (0.240096) |
|
med (0.232504) |
|
cbl (0.229595) |
|
jca (0.22792) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
sag (0.182715) |
|
ill (0.175593) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
eye (0.170503) |
|
nco (0.161734) |
|
cli (0.152812) |
|
cag (0.151194) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
ecc (0.115035) |
|
ldo (0.0970026) |
|
col (0.585023) |
|
cly (0.482567) |
|
ece (0.45861) |
|
nms (0.427716) |
|
fty (0.351679) |
|
rec (0.346141) |
|
nbm (0.297974) |
|
jej (0.296765) |
|
eje (0.296501) |
|
eru (0.240096) |
|
med (0.232504) |
|
cbl (0.229595) |
|
jca (0.22792) |
|
aor (0.195274) |
|
nlu (0.191681) |
|
sag (0.182715) |
|
ill (0.175593) |
|
ton (0.1755) |
|
fbs (0.175346) |
|
duo (0.172801) |
|
eye (0.170503) |
|
nco (0.161734) |
|
cli (0.152812) |
|
cag (0.151194) |
|
hlv (0.139256) |
|
nca (0.136874) |
|
pla (0.133672) |
|
nmm (0.132802) |
|
cov (0.132153) |
|
ecc (0.115035) |
|
ldo (0.0970026) |
