Ss1.1-Pig4-TMW8046L17.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGTGGTGCAGTCCTAAAAG GAAGGAAAAAGAAAAAAGAATGAAACACATACTGGAGAGAAGCCATATTAATATAGAAAA TATGGGAGAGCCTTCCCTATTTCATCAGACCTTGCAGCAAACATGAGAACTCACACTGTA GGTCTGTTTGCTCAGAACCCTGCCTGGCCAGGAAGGAGACACATCAGAAGAATGGCTGCA GGATTGCTGACAACCTGGTCACAGGATTCAGTGACCTTCGAGGAAGTGACAGTAGACTTC TCCCAGGAGGAGTGGGCCTTGCTGGACCCTGCTCAGAAAATCCTGTACAGAGATGTGATG CTGGAGAACTTTAGGAACCTGGCCTCTCTGGCAGGGTATCAACTCTGCAAGCACAGCCTG ATCACTGAGATGGAGCAGGAAGAGCAGAAGCCAGAGGGGAGAGGAATTCTCCAAGGTGCT GGCACAGACTGGGAAACTCAACTTAAATCAAAAGATGCAATTCTTATGCAGAGTGTTCCT GGGGAAAAAACTTCCAATAGCATGAAAATGGTACCAGCTCAACCTCATGAGAAACCCTTG GGATTTAATCACTGTGGAAAATTCTTCAGAAAGAACTGTCACCTTATTTGTACAAGATTT TGCAAGGGAGAGAAATGCTACAAATATAAGGAATATGGGCAAGACTTTGGCCATTTCTCA ACTCTTAGGAGTCATGTGAGCACTCACACTGGAGAAAACAATCTTGAATTTAGTGACTGT GGAATTACTTTCAATCAAGAGTCGTCCTTCAGGAAACACTTAACTCTCACAGGAGAGAAA TCTTCTGAGTATAATCAACACCTTATGTCCTTCAGCTTACACTCTTCCTTTTTAGCACAC GGACAAATACCTACTGGAGAGAAACTCTGTGAATACAGTGACTATGGAAAAAGATCTTTC CTTGGTGTCCAAAAAAAAATGTATGCTGTGGAGGAATGCTCAAAATGTAATGAACATGGG GAAGTTTTCACTGGCCCTTTGTCCCTTCAGATATGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAAGTGTGGTGCAGTCCTAAAAG GAAGGAAAAAGAAAAAAGAATGAAACACATACTGGAGAGAAGCCATATTAATATAGAAAA TATGGGAGAGCCTTCCCTATTTCATCAGACCTTGCAGCAAACATGAGAACTCACACTGTA GGTCTGTTTGCTCAGAACCCTGCCTGGCCAGGAAGGAGACACATCAGAAGAATGGCTGCA GGATTGCTGACAACCTGGTCACAGGATTCAGTGACCTTCGAGGAAGTGACAGTAGACTTC TCCCAGGAGGAGTGGGCCTTGCTGGACCCTGCTCAGAAAATCCTGTACAGAGATGTGATG CTGGAGAACTTTAGGAACCTGGCCTCTCTGGCAGGGTATCAACTCTGCAAGCACAGCCTG ATCACTGAGATGGAGCAGGAAGAGCAGAAGCCAGAGGGGAGAGGAATTCTCCAAGGTGCT GGCACAGACTGGGAAACTCAACTTAAATCAAAAGATGCAATTCTTATGCAGAGTGTTCCT GGGGAAAAAACTTCCAATAGCATGAAAATGGTACCAGCTCAACCTCATGAGAAACCCTTG GGATTTAATCACTGTGGAAAATTCTTCAGAAAGAACTGTCACCTTATTTGTACAAGATTT TGCAAGGGAGAGAAATGCTACAAATATAAGGAATATGGGCAAGACTTTGGCCATTTCTCA ACTCTTAGGAGTCATGTGAGCACTCACACTGGAGAAAACAATCTTGAATTTAGTGACTGT GGAATTACTTTCAATCAAGAGTCGTCCTTCAGGAAACACTTAACTCTCACAGGAGAGAAA TCTTCTGAGTATAATCAACACCTTATGTCCTTCAGCTTACACTCTTCCTTTTTAGCACAC GGACAAATACCTACTGGAGAGAAACTCTGTGAATACAGTGACTATGGAAAAAGATCTTTC CTTGGTGTCCAAAAAAAAATGTATGCTGTGGAGGAATGCTCAAAATGTAATGAACATGGG GAAGTTTTCACTGGCCCTTTGTCCCTTCAGATATGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 1011-1116, - strand, RNAz p=0.991558 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 1011-1116, - strand, RNAz p=0.991558 |
| Aligned organism(s): 25 entry(ies) | More info |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
| 288-629, gnl|bosTau2|chr17 (22472384-22472719) | |
| 288-629, gnl|Hg17|chr12 (132308771-132308436) | |
| 332-476, gnl|bosTau2|chr10 (9028022-9028167) | |
| 332-476, gnl|canFam2|chr13 (41173866-41173720) | |
| 332-476, gnl|dasNov1|scaffold_56625 (6765-6916) | |
| 332-476, gnl|echTel1|scaffold_312536 (80320-80163) | |
| 332-476, gnl|galGal2|chr2 (106181-106339) | |
| 332-476, gnl|Hg17|chr2 (95240871-95240727) | |
| 332-476, gnl|hg17|chr8 (145962995-145963132) | |
| 332-476, gnl|loxAfr1|scaffold_13772 (22431-22286) | |
| 332-476, gnl|mm7|chr15 (76952962-76952805) | |
| 332-476, gnl|Mm7|chr8 (105017933-105018076) | |
| 332-476, gnl|oryCun1|scaffold_201253 (40291-40434) | |
| 332-476, gnl|panTro1|chr7 (149223426-149223563) | |
| 332-476, gnl|rheMac2|chr8 (147411239-147411378) | |
| 332-476, gnl|rn3|chr7 (114959872-114959715) | |
| 332-476, gnl|xenTro1|scaffold_2065 (34948-34800) | |
| 630-1116, gnl|bosTau2|chr19 (20636132-20635649) | |
| 630-1116, gnl|Mm7|chr2 (175242172-175241684) | |
| 638-1012, gnl|bosTau2|chr17 (22473493-22473873) | |
| 638-1012, gnl|Hg17|chr5 (140620638-140621003) | |
| 638-1012, gnl|Mm7|chr9 (20221029-20220649) | |
| 649-1011, gnl|bosTau2|chr10 (8996762-8996394) | |
| 649-1011, gnl|Hg17|chr19 (42818567-42818199) | |
| 649-1011, gnl|Mm7|chr2 (127310193-127309825) |
| Aligned organism(s): 25 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 288-629, gnl|bosTau2|chr17 (22472384-22472719) | |
| 288-629, gnl|Hg17|chr12 (132308771-132308436) | |
| 332-476, gnl|bosTau2|chr10 (9028022-9028167) | |
| 332-476, gnl|canFam2|chr13 (41173866-41173720) | |
| 332-476, gnl|dasNov1|scaffold_56625 (6765-6916) | |
| 332-476, gnl|echTel1|scaffold_312536 (80320-80163) | |
| 332-476, gnl|galGal2|chr2 (106181-106339) | |
| 332-476, gnl|Hg17|chr2 (95240871-95240727) | |
| 332-476, gnl|hg17|chr8 (145962995-145963132) | |
| 332-476, gnl|loxAfr1|scaffold_13772 (22431-22286) | |
| 332-476, gnl|mm7|chr15 (76952962-76952805) | |
| 332-476, gnl|Mm7|chr8 (105017933-105018076) | |
| 332-476, gnl|oryCun1|scaffold_201253 (40291-40434) | |
| 332-476, gnl|panTro1|chr7 (149223426-149223563) | |
| 332-476, gnl|rheMac2|chr8 (147411239-147411378) | |
| 332-476, gnl|rn3|chr7 (114959872-114959715) | |
| 332-476, gnl|xenTro1|scaffold_2065 (34948-34800) | |
| 630-1116, gnl|bosTau2|chr19 (20636132-20635649) | |
| 630-1116, gnl|Mm7|chr2 (175242172-175241684) | |
| 638-1012, gnl|bosTau2|chr17 (22473493-22473873) | |
| 638-1012, gnl|Hg17|chr5 (140620638-140621003) | |
| 638-1012, gnl|Mm7|chr9 (20221029-20220649) | |
| 649-1011, gnl|bosTau2|chr10 (8996762-8996394) | |
| 649-1011, gnl|Hg17|chr19 (42818567-42818199) | |
| 649-1011, gnl|Mm7|chr2 (127310193-127309825) |
| Expressed library(ies): 1 entry(ies) | More info |
| Expressed library(ies): 1 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| che (0.136314) |