Ss1.1-Pig4-TMW8046L18.3
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGAAGCTCAACTGAGGAGAGATACCAACGTACTAGTATATATTAAAAGAAGACTAGCAAT GTGTGCAAGAAAATTAGGAAGAATAAGAGAAGCAGTAAAAATAATGAGAGATTTGATGAA AGAATTTCCTCCTCTTACTATGTTGAACATCCATGAAAATCTCCTAGAGTCACTTTTAGA ATTACAGGCCTATGCAGATGTTCAAGCAGTCCTAGCAAAATATGACGATATAAGCCTTCC AAAGTCAGCAGCCATCTGTTATACAGCAGCGCTATTGAAGACAAGGACTGTTTCAGATAA ATTTTCTCCAGAAACAGCCTCCAGAAGAGGGTTAAGCACAGCAGAAATTAATGCTGTGGA AGCAATTCATAGAGCTGTGGAATTTAATCCTCATGTTCCAAAATATTTACTAGAGATGAA AAGTCTCATTTTACCTCCAGAACACATTCTGAAACGGGGTGATAGTGAAGCAATTGCCTA TGCTTTCTTTCATCTTCAGCACTGGAAGCGGATAGAAGGTGCCCTTAATCTGTTACAGTG TACGTGGGAAGGCACTTTTAGAATGATTCCATACCCACTAGAGAAAGGCCATCTATTTTA CCCTTACCCCAGCTGCACAGAGACTGCTGACAGAGAGCTATTACCTACATTTCATCATGT TTCTGTTTACCCAAAGAAGGAGCTTCCTTTTTTCATCCATTTCACAGCAGGACTGTGTTC TTCTACAGCAATGATAGCTCTTCTCACACACCAATTTCCTGAAATCATGGGTGTTTTTGC TAAAGCTGTAAGTATGATCTCAAGGACTTGTGTGGAGTATTTGTAAAACACACAAGAAAC CATTTATGATCTGTTTGTGCTAAACCAGTTGAGCAGTGGAATTTGTTAAAGTACAAGAAT TGATTTGTAAAGTTGCTGCCATAAATATGTCAAATATAAGTTTTTGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGAAGCTCAACTGAGGAGAGATACCAACGTACTAGTATATATTAAAAGAAGACTAGCAAT GTGTGCAAGAAAATTAGGAAGAATAAGAGAAGCAGTAAAAATAATGAGAGATTTGATGAA AGAATTTCCTCCTCTTACTATGTTGAACATCCATGAAAATCTCCTAGAGTCACTTTTAGA ATTACAGGCCTATGCAGATGTTCAAGCAGTCCTAGCAAAATATGACGATATAAGCCTTCC AAAGTCAGCAGCCATCTGTTATACAGCAGCGCTATTGAAGACAAGGACTGTTTCAGATAA ATTTTCTCCAGAAACAGCCTCCAGAAGAGGGTTAAGCACAGCAGAAATTAATGCTGTGGA AGCAATTCATAGAGCTGTGGAATTTAATCCTCATGTTCCAAAATATTTACTAGAGATGAA AAGTCTCATTTTACCTCCAGAACACATTCTGAAACGGGGTGATAGTGAAGCAATTGCCTA TGCTTTCTTTCATCTTCAGCACTGGAAGCGGATAGAAGGTGCCCTTAATCTGTTACAGTG TACGTGGGAAGGCACTTTTAGAATGATTCCATACCCACTAGAGAAAGGCCATCTATTTTA CCCTTACCCCAGCTGCACAGAGACTGCTGACAGAGAGCTATTACCTACATTTCATCATGT TTCTGTTTACCCAAAGAAGGAGCTTCCTTTTTTCATCCATTTCACAGCAGGACTGTGTTC TTCTACAGCAATGATAGCTCTTCTCACACACCAATTTCCTGAAATCATGGGTGTTTTTGC TAAAGCTGTAAGTATGATCTCAAGGACTTGTGTGGAGTATTTGTAAAACACACAAGAAAC CATTTATGATCTGTTTGTGCTAAACCAGTTGAGCAGTGGAATTTGTTAAAGTACAAGAAT TGATTTGTAAAGTTGCTGCCATAAATATGTCAAATATAAGTTTTTGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 291-522, + strand, RNAz p=0.949336 | |
| 727-845, - strand, RNAz p=0.538741 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 291-522, + strand, RNAz p=0.949336 | |
| 727-845, - strand, RNAz p=0.538741 |
| Aligned organism(s): 60 entry(ies) | More info |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
| 102-225, gnl|bosTau2|chr3 (27295787-27295665) | |
| 102-225, gnl|canFam2|chr17 (66059049-66058878) | |
| 102-225, gnl|danRer3|chrNA (127656120-127656278) | |
| 102-225, gnl|dasNov1|scaffold_16965 (9849-10010) | |
| 102-225, gnl|echTel1|scaffold_294676 (105513-105675) | |
| 102-225, gnl|fr1|chrUn (44378842-44378685) | |
| 102-225, gnl|galGal2|chr26 (2097186-2097357) | |
| 102-225, gnl|hg17|chr1 (112836652-112836825) | |
| 102-225, gnl|Hg17|chr1 (112836780-112836658) | |
| 102-225, gnl|loxAfr1|scaffold_71727 (8080-8254) | |
| 102-225, gnl|mm7|chr3 (104685352-104685171) | |
| 102-225, gnl|Mm7|chr3 (104685222-104685344) | |
| 102-225, gnl|monDom2|scaffold_0 (2754026-2753858) | |
| 102-225, gnl|oryCun1|scaffold_148792 (2147-1978) | |
| 102-225, gnl|panTro1|chr1 (109423696-109423523) | |
| 102-225, gnl|rheMac2|chr1 (115574592-115574765) | |
| 102-225, gnl|rn3|chr2 (200116494-200116322) | |
| 102-225, gnl|tetNig1|chr11 (3164679-3164837) | |
| 102-225, gnl|xenTro1|scaffold_11 (2981170-2981004) | |
| 291-403, gnl|bosTau2|chr3 (27292165-27292053) | |
| 291-403, gnl|canFam2|chr17 (66062920-66062800) | |
| 291-403, gnl|danRer3|chrNA (127655717-127655830) | |
| 291-403, gnl|dasNov1|scaffold_10178 (6791-6682) | |
| 291-403, gnl|echTel1|scaffold_294676 (98787-98907) | |
| 291-403, gnl|fr1|chrUn (44379185-44379070) | |
| 291-403, gnl|galGal2|chr26 (2094751-2094871) | |
| 291-403, gnl|hg17|chr1 (112831639-112831759) | |
| 291-403, gnl|Hg17|chr1 (112831762-112831650) | |
| 291-403, gnl|loxAfr1|scaffold_71727 (4322-4442) | |
| 291-403, gnl|mm7|chr3 (104688846-104688726) | |
| 291-403, gnl|Mm7|chr3 (104688720-104688833) | |
| 291-403, gnl|monDom2|scaffold_0 (2756040-2755920) | |
| 291-403, gnl|oryCun1|scaffold_201308 (120231-120344) | |
| 291-403, gnl|panTro1|chr1 (109428685-109428565) | |
| 291-403, gnl|rheMac2|chr1 (115569575-115569695) | |
| 291-403, gnl|rn3|chr2 (200120364-200120244) | |
| 291-403, gnl|tetNig1|chr11 (3164297-3164424) | |
| 291-403, gnl|xenTro1|scaffold_11 (2985644-2985526) | |
| 404-554, gnl|bosTau2|chr3 (27578823-27578973) | |
| 404-554, gnl|canFam2|chr17 (66082441-66082260) | |
| 404-554, gnl|danRer3|chrNA (127648129-127648291) | |
| 404-554, gnl|dasNov1|scaffold_6649 (43972-43794) | |
| 404-554, gnl|echTel1|scaffold_291019 (5425-5606) | |
| 404-554, gnl|fr1|chrUn (44384565-44384400) | |
| 404-554, gnl|galGal2|chr26 (2091917-2092098) | |
| 404-554, gnl|hg17|chr1 (112810514-112810695) | |
| 404-554, gnl|Hg17|chr1 (112810682-112810532) | |
| 404-554, gnl|loxAfr1|scaffold_103094 (1477-1294) | |
| 404-554, gnl|mm7|chr3 (104712819-104712639) | |
| 404-554, gnl|Mm7|chr3 (104712649-104712799) | |
| 404-554, gnl|monDom2|scaffold_0 (2765815-2765635) | |
| 404-554, gnl|oryCun1|scaffold_165289 (4655-4474) | |
| 404-554, gnl|panTro1|chr1 (109450953-109450785) | |
| 404-554, gnl|rheMac2|chr1 (115548222-115548403) | |
| 404-554, gnl|rn3|chr2 (200155185-200155005) | |
| 404-554, gnl|tetNig1|chr11 (3159590-3159755) | |
| 404-554, gnl|xenTro1|scaffold_11 (2994616-2994446) | |
| 648-948, gnl|bosTau2|chr3 (27587635-27587946) | |
| 648-948, gnl|Hg17|chr1 (112796754-112796446) | |
| 648-948, gnl|Mm7|chr3 (104719729-104720030) |
| Aligned organism(s): 60 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 102-225, gnl|bosTau2|chr3 (27295787-27295665) | |
| 102-225, gnl|canFam2|chr17 (66059049-66058878) | |
| 102-225, gnl|danRer3|chrNA (127656120-127656278) | |
| 102-225, gnl|dasNov1|scaffold_16965 (9849-10010) | |
| 102-225, gnl|echTel1|scaffold_294676 (105513-105675) | |
| 102-225, gnl|fr1|chrUn (44378842-44378685) | |
| 102-225, gnl|galGal2|chr26 (2097186-2097357) | |
| 102-225, gnl|hg17|chr1 (112836652-112836825) | |
| 102-225, gnl|Hg17|chr1 (112836780-112836658) | |
| 102-225, gnl|loxAfr1|scaffold_71727 (8080-8254) | |
| 102-225, gnl|mm7|chr3 (104685352-104685171) | |
| 102-225, gnl|Mm7|chr3 (104685222-104685344) | |
| 102-225, gnl|monDom2|scaffold_0 (2754026-2753858) | |
| 102-225, gnl|oryCun1|scaffold_148792 (2147-1978) | |
| 102-225, gnl|panTro1|chr1 (109423696-109423523) | |
| 102-225, gnl|rheMac2|chr1 (115574592-115574765) | |
| 102-225, gnl|rn3|chr2 (200116494-200116322) | |
| 102-225, gnl|tetNig1|chr11 (3164679-3164837) | |
| 102-225, gnl|xenTro1|scaffold_11 (2981170-2981004) | |
| 291-403, gnl|bosTau2|chr3 (27292165-27292053) | |
| 291-403, gnl|canFam2|chr17 (66062920-66062800) | |
| 291-403, gnl|danRer3|chrNA (127655717-127655830) | |
| 291-403, gnl|dasNov1|scaffold_10178 (6791-6682) | |
| 291-403, gnl|echTel1|scaffold_294676 (98787-98907) | |
| 291-403, gnl|fr1|chrUn (44379185-44379070) | |
| 291-403, gnl|galGal2|chr26 (2094751-2094871) | |
| 291-403, gnl|hg17|chr1 (112831639-112831759) | |
| 291-403, gnl|Hg17|chr1 (112831762-112831650) | |
| 291-403, gnl|loxAfr1|scaffold_71727 (4322-4442) | |
| 291-403, gnl|mm7|chr3 (104688846-104688726) | |
| 291-403, gnl|Mm7|chr3 (104688720-104688833) | |
| 291-403, gnl|monDom2|scaffold_0 (2756040-2755920) | |
| 291-403, gnl|oryCun1|scaffold_201308 (120231-120344) | |
| 291-403, gnl|panTro1|chr1 (109428685-109428565) | |
| 291-403, gnl|rheMac2|chr1 (115569575-115569695) | |
| 291-403, gnl|rn3|chr2 (200120364-200120244) | |
| 291-403, gnl|tetNig1|chr11 (3164297-3164424) | |
| 291-403, gnl|xenTro1|scaffold_11 (2985644-2985526) | |
| 404-554, gnl|bosTau2|chr3 (27578823-27578973) | |
| 404-554, gnl|canFam2|chr17 (66082441-66082260) | |
| 404-554, gnl|danRer3|chrNA (127648129-127648291) | |
| 404-554, gnl|dasNov1|scaffold_6649 (43972-43794) | |
| 404-554, gnl|echTel1|scaffold_291019 (5425-5606) | |
| 404-554, gnl|fr1|chrUn (44384565-44384400) | |
| 404-554, gnl|galGal2|chr26 (2091917-2092098) | |
| 404-554, gnl|hg17|chr1 (112810514-112810695) | |
| 404-554, gnl|Hg17|chr1 (112810682-112810532) | |
| 404-554, gnl|loxAfr1|scaffold_103094 (1477-1294) | |
| 404-554, gnl|mm7|chr3 (104712819-104712639) | |
| 404-554, gnl|Mm7|chr3 (104712649-104712799) | |
| 404-554, gnl|monDom2|scaffold_0 (2765815-2765635) | |
| 404-554, gnl|oryCun1|scaffold_165289 (4655-4474) | |
| 404-554, gnl|panTro1|chr1 (109450953-109450785) | |
| 404-554, gnl|rheMac2|chr1 (115548222-115548403) | |
| 404-554, gnl|rn3|chr2 (200155185-200155005) | |
| 404-554, gnl|tetNig1|chr11 (3159590-3159755) | |
| 404-554, gnl|xenTro1|scaffold_11 (2994616-2994446) | |
| 648-948, gnl|bosTau2|chr3 (27587635-27587946) | |
| 648-948, gnl|Hg17|chr1 (112796754-112796446) | |
| 648-948, gnl|Mm7|chr3 (104719729-104720030) |
| Expressed library(ies): 12 entry(ies) | More info |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
| thg (0.253582) | |
| tra (0.246184) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| sag (0.182715) | |
| rec (0.17307) | |
| liv (0.146284) | |
| lin (0.145603) | |
| sug (0.127291) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| jej (0.0989218) |
| Expressed library(ies): 12 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| thg (0.253582) | |
| tra (0.246184) | |
| mgp (0.230681) | |
| tes (0.207814) | |
| sag (0.182715) | |
| rec (0.17307) | |
| liv (0.146284) | |
| lin (0.145603) | |
| sug (0.127291) | |
| ecc (0.115035) | |
| spc (0.113366) | |
| jej (0.0989218) |