Non-Coding RNA Search

Ss1.1-Pig4-TMW8046M08.3

Sequence:


               
               TCTCTGGGGATTATGGCAATCGAAATGGTATAAGGTGAACCCCCTTACCTTAATGAAAAT
GCACTCAGGGCATTATATCTGATAACCACTAATGGAACCCCCGTGCTACAGAATCCCGAG
AGACTGTCTGCCGTGTTACGTGATTTTTTAAATCGCTGTCTTGAGATGGATGTGGACAGA
CGAGGATCCGCCAAGGAGCTTTTGCAGCATCCATTTTTAAAATTAGCCAAGCCTCTCTCC
AGCCTGACTCCTCTGATTATTGCTGCAAAGGAAGCGATTAAGAACAGCAGCCGCTAGGAC
TGCAAGCCTTACCCACACCATCTCCCTCATGAGTGAGACTGAAATAAAACTCCGCTGCCT
GCGGAAAGATGGAAGAAAAGACAGTCAAATGGGCCGGGGGTTCCTTACCTTTCAAATGAA
TAGAAACTTCTTATAAGCCTTTTTCCTACTCCCTCAGATTATGTAATTTATTTGTAAGCC
TGAATCGCAGCCCTAACAGGGCAGCAATGTCGAAGTGGCCATAAAGTGGTCACTTCCACC
GTGAAGCGAAAGAGCCAGTAGTGAATCCCCTCATTTTGTGCATTCACTTTGAAGAAAACA
GAGTTTCTCAAAGATGCACACTCCCTCTTCATAGTGTTGTGTTTGTTTTTAAGTTAGAGA
GTAGGCCCTCTTGCATTCGAACCTCCTTCAAAACTCCTTACCCGATGTGATGTTTTTCAC
TTTCATTGTCATTAGATGTCCAGAAAAAAAAGATGTCAAAATGTTTTTTTTTAAAAAGTA
AAAGACAAAAACAAAACAAAAAAAAAAACAAAAAGAAAGCAAAACAAAACAAAAAAAAAA
AACCCCACCCCAGAGCAAGTACTGTGTGAACATGTGGAAGTCCATGCCCTAATAGAGTTC
CAATTTTTTATTCTTCTTCTGTAGTGGTGGCTTGGTTCGTGTACCCGTTTTTCTGCATTG
GTATTGGAAAAGGTTTCTTTTAGGACATTTTCCAAAAGCAGAGAGGAGTGTGTGTGTTCA
GGAAGGCCTTTTAAACACTGTATATCTAAATAAAGTTCAAATGGTGAAATCTTATCACAT
TTTCATGATGATGCTTAAGAGGTAGTTGATTTAGCATTTGTATAAACCAGCTTGCTCATC
TTCATGATACCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TCTCTGGGGATTATGGCAATCGAAATGGTATAAGGTGAACCCCCTTACCTTAATGAAAAT
GCACTCAGGGCATTATATCTGATAACCACTAATGGAACCCCCGTGCTACAGAATCCCGAG
AGACTGTCTGCCGTGTTACGTGATTTTTTAAATCGCTGTCTTGAGATGGATGTGGACAGA
CGAGGATCCGCCAAGGAGCTTTTGCAGCATCCATTTTTAAAATTAGCCAAGCCTCTCTCC
AGCCTGACTCCTCTGATTATTGCTGCAAAGGAAGCGATTAAGAACAGCAGCCGCTAGGAC
TGCAAGCCTTACCCACACCATCTCCCTCATGAGTGAGACTGAAATAAAACTCCGCTGCCT
GCGGAAAGATGGAAGAAAAGACAGTCAAATGGGCCGGGGGTTCCTTACCTTTCAAATGAA
TAGAAACTTCTTATAAGCCTTTTTCCTACTCCCTCAGATTATGTAATTTATTTGTAAGCC
TGAATCGCAGCCCTAACAGGGCAGCAATGTCGAAGTGGCCATAAAGTGGTCACTTCCACC
GTGAAGCGAAAGAGCCAGTAGTGAATCCCCTCATTTTGTGCATTCACTTTGAAGAAAACA
GAGTTTCTCAAAGATGCACACTCCCTCTTCATAGTGTTGTGTTTGTTTTTAAGTTAGAGA
GTAGGCCCTCTTGCATTCGAACCTCCTTCAAAACTCCTTACCCGATGTGATGTTTTTCAC
TTTCATTGTCATTAGATGTCCAGAAAAAAAAGATGTCAAAATGTTTTTTTTTAAAAAGTA
AAAGACAAAAACAAAACAAAAAAAAAAACAAAAAGAAAGCAAAACAAAACAAAAAAAAAA
AACCCCACCCCAGAGCAAGTACTGTGTGAACATGTGGAAGTCCATGCCCTAATAGAGTTC
CAATTTTTTATTCTTCTTCTGTAGTGGTGGCTTGGTTCGTGTACCCGTTTTTCTGCATTG
GTATTGGAAAAGGTTTCTTTTAGGACATTTTCCAAAAGCAGAGAGGAGTGTGTGTGTTCA
GGAAGGCCTTTTAAACACTGTATATCTAAATAAAGTTCAAATGGTGAAATCTTATCACAT
TTTCATGATGATGCTTAAGAGGTAGTTGATTTAGCATTTGTATAAACCAGCTTGCTCATC
TTCATGATACCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|26345222|dbj|BAC36261.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|26345222|dbj|BAC36261.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               435-634, - strand, RNAz p=0.995917
               

               
               902-1021, - strand, RNAz p=0.658018

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               435-634, - strand, RNAz p=0.995917
               

               
               902-1021, - strand, RNAz p=0.658018

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               199-1151, gnl|bosTau2|chrX (19381540-19382493)
               

               
               199-1151, gnl|Hg17|chrX (110269722-110270670)
               

               
               199-1151, gnl|Mm7|chrX (138455544-138456481)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               199-1151, gnl|bosTau2|chrX (19381540-19382493)
               

               
               199-1151, gnl|Hg17|chrX (110269722-110270670)
               

               
               199-1151, gnl|Mm7|chrX (138455544-138456481)

Expressed library(ies): 5 entry(ies)

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Expressed library(ies): 5 entry(ies)

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               tes (0.207814)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

Expressed library(ies): 5 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               tes (0.207814)
               

               
               fco (0.157208)
               

               
               hyp (0.142837)
               

               
               ebs (0.118301)
               

               
               ecc (0.115035)

	435-634, - strand, RNAz p=0.995917
	902-1021, - strand, RNAz p=0.658018

	199-1151, gnl\|bosTau2\|chrX (19381540-19382493)
	199-1151, gnl\|Hg17\|chrX (110269722-110270670)
	199-1151, gnl\|Mm7\|chrX (138455544-138456481)

	tes (0.207814)
	fco (0.157208)
	hyp (0.142837)
	ebs (0.118301)
	ecc (0.115035)