Non-Coding RNA Search

Ss1.1-Pig4-TMW8046M09.5

Sequence:


               
               TTTTTTTTGGCAGTCTGTCAGGGTGTTTATTCCCACGGGATGTAACCCAGAACACAGGAG
CAACTCTGTACACTCTAGAAAGTCACAGCTAGCTCCACAACAACAGAAAGGTTCAACTAC
AAAAGGGGAGGCGTTCCCAGCAAATACAAAGGGCCAGGTGGGCCGCGTCCAACGTGTCCA
CCGGCGCTCACACGCCCGGCGCGGGTTCAGATCTCGCCGGCCTCCTTCTCCTCCGACCTC
CGCGAGGTGCTCTTCCCGTTGGCGCTCTCCAGCCTCCAGTCGGCGGCCCCCCTCTCGCTC
CGCCCGCGCTCCCAGGACGCCTCCCTGGAGGCCCGCTCTCTGGAGAACCTGTATTTCGAA
CTCCGGTCCCTGGATGGCCGGCGGTGGCCTCGGCTATGGCTCCGGGAACGGCTCCGGTGG
CGCCGGTGTCTGTCTTGGGACCGGGACCGGGAGGACTTCCGCCGCTCTCTGGAAGGAGAC
CTGGACCGCCTCCGCCGCCGGTCCCGGGAGCGCGACCTCCTGCGATCTCTGGTTCTTGAT
CCAGACCTCCTGCTCAGCCGCTCCTCCCGCTCCCGCTCCTCCCTCCTCCTCAGTCGATCC
TGATTTCTCTTCTCCTGCTTCTCTGCCACAGTTTTCCGCAACTGATCAAGCTTCTCACGG
ATCTGAATGAACCCCAAGTGCAACTTGCCCCCGAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TTTTTTTTGGCAGTCTGTCAGGGTGTTTATTCCCACGGGATGTAACCCAGAACACAGGAG
CAACTCTGTACACTCTAGAAAGTCACAGCTAGCTCCACAACAACAGAAAGGTTCAACTAC
AAAAGGGGAGGCGTTCCCAGCAAATACAAAGGGCCAGGTGGGCCGCGTCCAACGTGTCCA
CCGGCGCTCACACGCCCGGCGCGGGTTCAGATCTCGCCGGCCTCCTTCTCCTCCGACCTC
CGCGAGGTGCTCTTCCCGTTGGCGCTCTCCAGCCTCCAGTCGGCGGCCCCCCTCTCGCTC
CGCCCGCGCTCCCAGGACGCCTCCCTGGAGGCCCGCTCTCTGGAGAACCTGTATTTCGAA
CTCCGGTCCCTGGATGGCCGGCGGTGGCCTCGGCTATGGCTCCGGGAACGGCTCCGGTGG
CGCCGGTGTCTGTCTTGGGACCGGGACCGGGAGGACTTCCGCCGCTCTCTGGAAGGAGAC
CTGGACCGCCTCCGCCGCCGGTCCCGGGAGCGCGACCTCCTGCGATCTCTGGTTCTTGAT
CCAGACCTCCTGCTCAGCCGCTCCTCCCGCTCCCGCTCCTCCCTCCTCCTCAGTCGATCC
TGATTTCTCTTCTCCTGCTTCTCTGCCACAGTTTTCCGCAACTGATCAAGCTTCTCACGG
ATCTGAATGAACCCCAAGTGCAACTTGCCCCCGAAG

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               9-351, gnl|bosTau2|chr25 (2644951-2645297)
               

               
               9-351, gnl|Hg17|chr16 (178996-179342)
               

               
               9-351, gnl|Mm7|chr17 (24465203-24464862)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               9-351, gnl|bosTau2|chr25 (2644951-2645297)
               

               
               9-351, gnl|Hg17|chr16 (178996-179342)
               

               
               9-351, gnl|Mm7|chr17 (24465203-24464862)

Expressed library(ies): 7 entry(ies)

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Expressed library(ies): 7 entry(ies)

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               amn (0.417711)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

Expressed library(ies): 7 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               amn (0.417711)
               

               
               fbs (0.175346)
               

               
               eye (0.170503)
               

               
               nca (0.136874)
               

               
               ute (0.132784)
               

               
               ebs (0.118301)
               

               
               cty (0.10408)

	9-351, gnl\|bosTau2\|chr25 (2644951-2645297)
	9-351, gnl\|Hg17\|chr16 (178996-179342)
	9-351, gnl\|Mm7\|chr17 (24465203-24464862)

	amn (0.417711)
	fbs (0.175346)
	eye (0.170503)
	nca (0.136874)
	ute (0.132784)
	ebs (0.118301)
	cty (0.10408)