Ss1.1-Pig4-TMW8046M10.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TCGCTGGCGTCTTACCGTGTCGGGCTCGGTTGCAGACTCGTGTGTGTCCCGGCCGCGGCG GGCGGGAGGCGCGGTCATGCCTCGGTATTACGAGGACAAGCCGGAGGGCGGCGCGTGCGC GGGCGTGAAGGAGGACCTGGGCGCGTGTCTGTTGCAGTCGGACTGCGTGCTCCAGGAAGG AAAATCCCCTCGACAGTGTCTGAAGGAAGGAAGCTGCAAAGCTTTGCAATACTCATTTTT TGAGTGTAAAAGATCAATGTTAGATGCCAGATCAAGATTCAGAGGAAGAAAAGGATATTG ATACTGCTGTGTTGAAACCAAGATGAAAACAACAGAGAATTTCTTCTGGCCTTTGAAACA GAGAAACCAAAATAAGAAACAGACTTTTCGTCACATCTGTTCTATTGAACCAGTTTTTCC CTCCTCGGAACACTAAAGAAAATGAATGAGTTCTGGTTTTCAGTATGTATAAAGTAAATG ATTCTCTCTCTCTTTTTTTTTTTTAAAATTTTAATTTTTTCCAATTCTCTTGTTCTAAAT AATTTTTAGGAGAATTAATTGAACAGTTGTGGGCTGGGAACATCATAGATGTGTTTTAAG AATTGTTCTGAAGCACAGAAGATGGAAAGACTTTATTTTCAAACTTGACTCTTCAACCAG TTGATACAGTTTGTACATCCTTTGGGAATGCTGTGAAGGCCACTGAGGGGACTATTAAAA TCAACATGGAGTCTGGTGAGATGTCTGTCTGGAAAGTTTAGGATAAAGCTTTTTTAGTCA GTCTGTACTATTTAGTTCTAAAATAAATTGTGTTTGATTTCTTGGAGACGAAATGCTTCA TTTGCATTAATTCACTGAAGTACCTCAAAGTATTACTATCACGCATTAGGCATAGCTGGA TGCAAAGCCTGGGATTATGATGTCAGGGCTCCCTGCCTCCATCTCTTGACTATTTTTGTT TCCTGGCCTTGTTTTCAGGCAGGCCTGCTGTACATAAAGGGAAAGAGGCCAGTGTTCTAC AAAAGTACACATCCTTTAGATCTGTGATCCAAGAGGAGGAGAGATTGCCTCCTCCTCTAG GGTCCATGGGTCAAATCTACAAAAGGACTCTTGTCTTGCCTGGATCATCTGCTCTTATAT TAGACCAATCTCTGTGGAAAAAGGGATGAGAACCTGATCTTGGCCAGGTCTGGGCCTTAC GCCCTATATTTTGTAACTCTTGTCGGAATCACATTGGATGAATAACGCACCTGATCCTCA GAAGGATTCAGAGCAAACTGAAACAGTAGTTATTGACTGTAGAAGGCAAGACTGAAAATC ATGAAATGCTTGAAAAAGTTTAGAATCATTTTATTCTGATCACATAGTACAGTAGAGAGC CAGATATGAAACTGAGTTTCCAGTTTTATTTTCAGTATTGAAGAATAATGGACGAGCCAT AGCTGCTTCTTTAGTTCATTGGAGTTAAAGCAATCAAGTATTCCGTAGTTCACTTGCTTT CTTAAAGATTCACCTAAAGTTGTGAGAATTCGACTTCAGCACTGGTCATCATTGCAGAAA ATCACTGAGGTTCACTGTACAGCTTTTTACTGGGAAAGGGGAAATGATGGATTTTTTTTC ACTAACTTGTATATCTGTTTAAGTGGTACAATTTTTATTAAAAATAAAATTTGATAAATT TAAATTATTGTA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TCGCTGGCGTCTTACCGTGTCGGGCTCGGTTGCAGACTCGTGTGTGTCCCGGCCGCGGCG GGCGGGAGGCGCGGTCATGCCTCGGTATTACGAGGACAAGCCGGAGGGCGGCGCGTGCGC GGGCGTGAAGGAGGACCTGGGCGCGTGTCTGTTGCAGTCGGACTGCGTGCTCCAGGAAGG AAAATCCCCTCGACAGTGTCTGAAGGAAGGAAGCTGCAAAGCTTTGCAATACTCATTTTT TGAGTGTAAAAGATCAATGTTAGATGCCAGATCAAGATTCAGAGGAAGAAAAGGATATTG ATACTGCTGTGTTGAAACCAAGATGAAAACAACAGAGAATTTCTTCTGGCCTTTGAAACA GAGAAACCAAAATAAGAAACAGACTTTTCGTCACATCTGTTCTATTGAACCAGTTTTTCC CTCCTCGGAACACTAAAGAAAATGAATGAGTTCTGGTTTTCAGTATGTATAAAGTAAATG ATTCTCTCTCTCTTTTTTTTTTTTAAAATTTTAATTTTTTCCAATTCTCTTGTTCTAAAT AATTTTTAGGAGAATTAATTGAACAGTTGTGGGCTGGGAACATCATAGATGTGTTTTAAG AATTGTTCTGAAGCACAGAAGATGGAAAGACTTTATTTTCAAACTTGACTCTTCAACCAG TTGATACAGTTTGTACATCCTTTGGGAATGCTGTGAAGGCCACTGAGGGGACTATTAAAA TCAACATGGAGTCTGGTGAGATGTCTGTCTGGAAAGTTTAGGATAAAGCTTTTTTAGTCA GTCTGTACTATTTAGTTCTAAAATAAATTGTGTTTGATTTCTTGGAGACGAAATGCTTCA TTTGCATTAATTCACTGAAGTACCTCAAAGTATTACTATCACGCATTAGGCATAGCTGGA TGCAAAGCCTGGGATTATGATGTCAGGGCTCCCTGCCTCCATCTCTTGACTATTTTTGTT TCCTGGCCTTGTTTTCAGGCAGGCCTGCTGTACATAAAGGGAAAGAGGCCAGTGTTCTAC AAAAGTACACATCCTTTAGATCTGTGATCCAAGAGGAGGAGAGATTGCCTCCTCCTCTAG GGTCCATGGGTCAAATCTACAAAAGGACTCTTGTCTTGCCTGGATCATCTGCTCTTATAT TAGACCAATCTCTGTGGAAAAAGGGATGAGAACCTGATCTTGGCCAGGTCTGGGCCTTAC GCCCTATATTTTGTAACTCTTGTCGGAATCACATTGGATGAATAACGCACCTGATCCTCA GAAGGATTCAGAGCAAACTGAAACAGTAGTTATTGACTGTAGAAGGCAAGACTGAAAATC ATGAAATGCTTGAAAAAGTTTAGAATCATTTTATTCTGATCACATAGTACAGTAGAGAGC CAGATATGAAACTGAGTTTCCAGTTTTATTTTCAGTATTGAAGAATAATGGACGAGCCAT AGCTGCTTCTTTAGTTCATTGGAGTTAAAGCAATCAAGTATTCCGTAGTTCACTTGCTTT CTTAAAGATTCACCTAAAGTTGTGAGAATTCGACTTCAGCACTGGTCATCATTGCAGAAA ATCACTGAGGTTCACTGTACAGCTTTTTACTGGGAAAGGGGAAATGATGGATTTTTTTTC ACTAACTTGTATATCTGTTTAAGTGGTACAATTTTTATTAAAAATAAAATTTGATAAATT TAAATTATTGTA |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 524-637, - strand, RNAz p=0.570255 | |
| 977-1249, + strand, RNAz p=0.999525 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 524-637, - strand, RNAz p=0.570255 | |
| 977-1249, + strand, RNAz p=0.999525 |
| Homologous human UTR: 1 entry(ies) | More info |
| Homologous human UTR: 1 entry(ies) | Help | Less info |
Human gene identifier and UTR site,
human gene reading direction
human gene reading direction
| 5' of NM_001008215, + |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 51-179, gnl|bosTau2|chr11 (4010919-4011047) | |
| 51-179, gnl|canFam2|chr10 (47196840-47196736) | |
| 51-179, gnl|dasNov1|scaffold_7579 (3207-3311) | |
| 51-179, gnl|echTel1|scaffold_286063 (44147-44043) | |
| 51-179, gnl|galGal2|chr1 (125337757-125337863) | |
| 51-179, gnl|hg17|chr2 (98683284-98683388) | |
| 51-179, gnl|Hg17|chr2 (98683412-98683284) | |
| 51-179, gnl|loxAfr1|scaffold_2144 (136714-136609) | |
| 51-179, gnl|mm7|chr1 (37671246-37671350) | |
| 51-179, gnl|Mm7|chr1 (37671387-37671246) | |
| 51-179, gnl|monDom2|scaffold_11 (14444660-14444766) | |
| 51-179, gnl|oryCun1|scaffold_201464 (41348-41244) | |
| 51-179, gnl|panTro1|chr12 (101393660-101393764) | |
| 51-179, gnl|rheMac2|chr13 (98492056-98492160) | |
| 51-179, gnl|rn3|chr9 (36376738-36376842) | |
| 51-179, gnl|xenTro1|scaffold_798 (434104-433999) | |
| 259-516, gnl|bosTau2|chr11 (4049913-4050157) | |
| 259-516, gnl|canFam2|chr10 (47203256-47203562) | |
| 259-516, gnl|canFam2|chr10 (47203510-47203335) | |
| 259-516, gnl|dasNov1|scaffold_1261 (26482-26790) | |
| 259-516, gnl|dasNov1|scaffold_1261 (26740-26566) | |
| 259-516, gnl|echTel1|scaffold_159267 (2588-2900) | |
| 259-516, gnl|echTel1|scaffold_291509 (49365-49540) | |
| 259-516, gnl|galGal2|chr1 (125336080-125336260) | |
| 259-516, gnl|hg17|chr1 (110511553-110511866) | |
| 259-516, gnl|hg17|chr2 (98675521-98675693) | |
| 259-516, gnl|Hg17|chr2 (98675775-98675521) | |
| 259-516, gnl|loxAfr1|scaffold_2144 (146108-146417) | |
| 259-516, gnl|loxAfr1|scaffold_2144 (146355-146183) | |
| 259-516, gnl|mm7|chr1 (37661769-37661929) | |
| 259-516, gnl|Mm7|chr1 (37662009-37661769) | |
| 259-516, gnl|mm7|chrX (158995569-158995856) | |
| 259-516, gnl|monDom2|scaffold_11 (14433786-14433940) | |
| 259-516, gnl|monDom2|scaffold_111 (1514507-1514205) | |
| 259-516, gnl|oryCun1|scaffold_107272 (1065-772) | |
| 259-516, gnl|oryCun1|scaffold_107272 (821-983) | |
| 259-516, gnl|panTro1|chr1 (111771192-111770879) | |
| 259-516, gnl|panTro1|chr12 (101385884-101386056) | |
| 259-516, gnl|rheMac2|chr1 (113323901-113324214) | |
| 259-516, gnl|rheMac2|chr13 (98486047-98486221) | |
| 259-516, gnl|rn3|chr9 (36366588-36366740) | |
| 259-516, gnl|rn3|chrX (51075192-51074895) | |
| 524-1677, gnl|bosTau2|chr11 (4050122-4051311) | |
| 524-1677, gnl|Hg17|chr2 (98675556-98674399) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 51-179, gnl|bosTau2|chr11 (4010919-4011047) | |
| 51-179, gnl|canFam2|chr10 (47196840-47196736) | |
| 51-179, gnl|dasNov1|scaffold_7579 (3207-3311) | |
| 51-179, gnl|echTel1|scaffold_286063 (44147-44043) | |
| 51-179, gnl|galGal2|chr1 (125337757-125337863) | |
| 51-179, gnl|hg17|chr2 (98683284-98683388) | |
| 51-179, gnl|Hg17|chr2 (98683412-98683284) | |
| 51-179, gnl|loxAfr1|scaffold_2144 (136714-136609) | |
| 51-179, gnl|mm7|chr1 (37671246-37671350) | |
| 51-179, gnl|Mm7|chr1 (37671387-37671246) | |
| 51-179, gnl|monDom2|scaffold_11 (14444660-14444766) | |
| 51-179, gnl|oryCun1|scaffold_201464 (41348-41244) | |
| 51-179, gnl|panTro1|chr12 (101393660-101393764) | |
| 51-179, gnl|rheMac2|chr13 (98492056-98492160) | |
| 51-179, gnl|rn3|chr9 (36376738-36376842) | |
| 51-179, gnl|xenTro1|scaffold_798 (434104-433999) | |
| 259-516, gnl|bosTau2|chr11 (4049913-4050157) | |
| 259-516, gnl|canFam2|chr10 (47203256-47203562) | |
| 259-516, gnl|canFam2|chr10 (47203510-47203335) | |
| 259-516, gnl|dasNov1|scaffold_1261 (26482-26790) | |
| 259-516, gnl|dasNov1|scaffold_1261 (26740-26566) | |
| 259-516, gnl|echTel1|scaffold_159267 (2588-2900) | |
| 259-516, gnl|echTel1|scaffold_291509 (49365-49540) | |
| 259-516, gnl|galGal2|chr1 (125336080-125336260) | |
| 259-516, gnl|hg17|chr1 (110511553-110511866) | |
| 259-516, gnl|hg17|chr2 (98675521-98675693) | |
| 259-516, gnl|Hg17|chr2 (98675775-98675521) | |
| 259-516, gnl|loxAfr1|scaffold_2144 (146108-146417) | |
| 259-516, gnl|loxAfr1|scaffold_2144 (146355-146183) | |
| 259-516, gnl|mm7|chr1 (37661769-37661929) | |
| 259-516, gnl|Mm7|chr1 (37662009-37661769) | |
| 259-516, gnl|mm7|chrX (158995569-158995856) | |
| 259-516, gnl|monDom2|scaffold_11 (14433786-14433940) | |
| 259-516, gnl|monDom2|scaffold_111 (1514507-1514205) | |
| 259-516, gnl|oryCun1|scaffold_107272 (1065-772) | |
| 259-516, gnl|oryCun1|scaffold_107272 (821-983) | |
| 259-516, gnl|panTro1|chr1 (111771192-111770879) | |
| 259-516, gnl|panTro1|chr12 (101385884-101386056) | |
| 259-516, gnl|rheMac2|chr1 (113323901-113324214) | |
| 259-516, gnl|rheMac2|chr13 (98486047-98486221) | |
| 259-516, gnl|rn3|chr9 (36366588-36366740) | |
| 259-516, gnl|rn3|chrX (51075192-51074895) | |
| 524-1677, gnl|bosTau2|chr11 (4050122-4051311) | |
| 524-1677, gnl|Hg17|chr2 (98675556-98674399) |
| Expressed library(ies): 57 entry(ies) | More info |
| Expressed library(ies): 57 entry(ies) | Help | Less info |
| kid (1.03788) | |
| sin (0.874738) | |
| tes (0.831255) | |
| bla (0.746083) | |
| cbe (0.717703) | |
| sme (0.610874) | |
| ski (0.586941) | |
| mgm (0.541028) | |
| cty (0.5204) | |
| rec (0.519211) | |
| cki (0.495704) | |
| tra (0.492368) | |
| pgl (0.473934) | |
| spc (0.453463) | |
| isp (0.451128) | |
| cst (0.420109) | |
| lyg (0.399308) | |
| thg (0.380373) | |
| sag (0.36543) | |
| sto (0.359648) | |
| duo (0.345602) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| mga (0.32041) | |
| tbr (0.308356) | |
| lun (0.300978) | |
| bfe (0.299715) | |
| nbm (0.297974) | |
| fat (0.294855) | |
| lin (0.291206) | |
| ldo (0.291008) | |
| nca (0.273748) | |
| pla (0.267344) | |
| sug (0.254582) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| fco (0.157208) | |
| eli (0.151814) | |
| spl (0.143184) | |
| pty (0.142714) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ute (0.132784) | |
| ova (0.129132) | |
| cly (0.120642) | |
| eru (0.120048) |
| Expressed library(ies): 57 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| kid (1.03788) | |
| sin (0.874738) | |
| tes (0.831255) | |
| bla (0.746083) | |
| cbe (0.717703) | |
| sme (0.610874) | |
| ski (0.586941) | |
| mgm (0.541028) | |
| cty (0.5204) | |
| rec (0.519211) | |
| cki (0.495704) | |
| tra (0.492368) | |
| pgl (0.473934) | |
| spc (0.453463) | |
| isp (0.451128) | |
| cst (0.420109) | |
| lyg (0.399308) | |
| thg (0.380373) | |
| sag (0.36543) | |
| sto (0.359648) | |
| duo (0.345602) | |
| fhi (0.339155) | |
| vin (0.332557) | |
| mga (0.32041) | |
| tbr (0.308356) | |
| lun (0.300978) | |
| bfe (0.299715) | |
| nbm (0.297974) | |
| fat (0.294855) | |
| lin (0.291206) | |
| ldo (0.291008) | |
| nca (0.273748) | |
| pla (0.267344) | |
| sug (0.254582) | |
| mgp (0.230681) | |
| nms (0.213858) | |
| hea (0.204499) | |
| fcc (0.197785) | |
| aor (0.195274) | |
| nlu (0.191681) | |
| gul (0.177588) | |
| fty (0.17584) | |
| fbs (0.175346) | |
| nje (0.16592) | |
| fco (0.157208) | |
| eli (0.151814) | |
| spl (0.143184) | |
| pty (0.142714) | |
| csk (0.140746) | |
| hlv (0.139256) | |
| che (0.136314) | |
| ssp (0.13552) | |
| ste (0.135208) | |
| ute (0.132784) | |
| ova (0.129132) | |
| cly (0.120642) | |
| eru (0.120048) |