Non-Coding RNA Search

Ss1.1-Pig4-TMW8046M12.5.5

Sequence:


               
               AAGACTCACAAGCATAGCAACATCGTCCAGGTAGGACTATCCTACAAACAAGTGCGTGTG
AGACTAAGAAATTGCTAAGAGTAGGTTTCTTCACAGCTGTTTTAGCATTGTGTATTTTAG
ACCAATCTTGTCCAGTATTTTTTGTGTCTTTTGTATTTTTTTGTTAAGCCAACAAGCTGA
GAACTTGGCCCTCTGGGAATCCATGTAGGTAGGCAATAGCTAGCTGCTCTTTGGCCAAGG
CCTTCATAAATGATTCAGTCATCCCGTTGTCTGTTCCCTAGCCCCTCCCCTGGATGAAGA
CCATGGTAAGGGAAGAATTTGAGGTTGATACCACCCAACCAATTAAGTCTAAAGTAAATC
TGTTAAGTTTTTCCCTGAGAGAGCATTCTTGCATCAGACTTGGCTGTTTGCAGAATCAAA
TCTGGTTATGAGTTAGAAGAGGTGCCATTAAATTGAGGGCCCAGAACACCCCTGAAGAGA
AAGGTTTGTGTAGTGTGTCATAAAGATCTTCAGGGGGTTTGGGCCCACCTCTCTACTTCG
GGCCAGCCTAGCTGTTTTTGTCCACATTAGCACATACCTGGGTCCCTCTGCTAAACTCCA
ACCCTTTCCCTTATGTAGGCCAGATGTTCAGCTTCTGGGTTTGTGAAGAGTAAAGTCTGC
CATGCCAAGAACCCTCAGGCCCTGAGTTGAGTCTTGGCTCTTTTAGCCAGCTTTTGTGGG
CATTGCCTTTGATTGAACCACTAAAGACGAAAGGGGGTATGAGGACCCAGCTACTCAAGA
CAGATGCCCCTGAAAAACAGCTTGGTTTCCCAGCTCCAGATCCAAGGAAAGTGAATCAAA
CCTTTTTCCTCACTGGTTTTTCTTTTCAAATTGATTTGCTTTTAAGAACTACAAACTCTG
GCTATTATTTTCCATATTCTCAGGGCCCCTGGGTAGACAAGACAGAGCTTGATGATTTCA
GAGCAGACATAAGCCAAGAAACCATGGCGCTGAGTGTGCTGAGTCCAGACAGACAAATGA
TATTTATATACACATCCAAATTTGAAGAGAAAATGTATTTCTTTAGGTTTCAAACACTGT
AATAGATACAAAGCAAAAATAAAAACCTGTTGCAAAGTTCTAAATTGTGTTCTTTGGAAT
GATCCTAGACTGGATTTTTTGGAAATGAGCGAAAAGAGGGTGTTTAAACTTGTGGCCCAA
CAGTGGAGTTAAGAATTGCAACAGCCTGATTCTGCTATAAAGAAATTTTTAAAATCAACT
CTATTGAAATATGGACATACAGTAGATGGCAACATATTTAAAAAAATTTGTTAAGTGTTG
ACACGCATCCACGAGACCACCACAATCAAGATAGTGAAGGAACCTATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGACTCACAAGCATAGCAACATCGTCCAGGTAGGACTATCCTACAAACAAGTGCGTGTG
AGACTAAGAAATTGCTAAGAGTAGGTTTCTTCACAGCTGTTTTAGCATTGTGTATTTTAG
ACCAATCTTGTCCAGTATTTTTTGTGTCTTTTGTATTTTTTTGTTAAGCCAACAAGCTGA
GAACTTGGCCCTCTGGGAATCCATGTAGGTAGGCAATAGCTAGCTGCTCTTTGGCCAAGG
CCTTCATAAATGATTCAGTCATCCCGTTGTCTGTTCCCTAGCCCCTCCCCTGGATGAAGA
CCATGGTAAGGGAAGAATTTGAGGTTGATACCACCCAACCAATTAAGTCTAAAGTAAATC
TGTTAAGTTTTTCCCTGAGAGAGCATTCTTGCATCAGACTTGGCTGTTTGCAGAATCAAA
TCTGGTTATGAGTTAGAAGAGGTGCCATTAAATTGAGGGCCCAGAACACCCCTGAAGAGA
AAGGTTTGTGTAGTGTGTCATAAAGATCTTCAGGGGGTTTGGGCCCACCTCTCTACTTCG
GGCCAGCCTAGCTGTTTTTGTCCACATTAGCACATACCTGGGTCCCTCTGCTAAACTCCA
ACCCTTTCCCTTATGTAGGCCAGATGTTCAGCTTCTGGGTTTGTGAAGAGTAAAGTCTGC
CATGCCAAGAACCCTCAGGCCCTGAGTTGAGTCTTGGCTCTTTTAGCCAGCTTTTGTGGG
CATTGCCTTTGATTGAACCACTAAAGACGAAAGGGGGTATGAGGACCCAGCTACTCAAGA
CAGATGCCCCTGAAAAACAGCTTGGTTTCCCAGCTCCAGATCCAAGGAAAGTGAATCAAA
CCTTTTTCCTCACTGGTTTTTCTTTTCAAATTGATTTGCTTTTAAGAACTACAAACTCTG
GCTATTATTTTCCATATTCTCAGGGCCCCTGGGTAGACAAGACAGAGCTTGATGATTTCA
GAGCAGACATAAGCCAAGAAACCATGGCGCTGAGTGTGCTGAGTCCAGACAGACAAATGA
TATTTATATACACATCCAAATTTGAAGAGAAAATGTATTTCTTTAGGTTTCAAACACTGT
AATAGATACAAAGCAAAAATAAAAACCTGTTGCAAAGTTCTAAATTGTGTTCTTTGGAAT
GATCCTAGACTGGATTTTTTGGAAATGAGCGAAAAGAGGGTGTTTAAACTTGTGGCCCAA
CAGTGGAGTTAAGAATTGCAACAGCCTGATTCTGCTATAAAGAAATTTTTAAAATCAACT
CTATTGAAATATGGACATACAGTAGATGGCAACATATTTAAAAAAATTTGTTAAGTGTTG
ACACGCATCCACGAGACCACCACAATCAAGATAGTGAAGGAACCTATC

Aligned organism(s): 6 entry(ies)

More info

Aligned organism(s): 6 entry(ies)

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               10-424, gnl|bosTau2|chr2 (73471792-73472201)
               

               
               10-424, gnl|Hg17|chr1 (32309514-32309897)
               

               
               10-424, gnl|Mm7|chr4 (129089707-129089354)
               


               
               766-1119, gnl|bosTau2|chr10 (27594826-27595176)
               

               
               766-1119, gnl|Hg17|chr1 (32310911-32311257)
               

               
               766-1119, gnl|Mm7|chr4 (129088977-129088632)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               10-424, gnl|bosTau2|chr2 (73471792-73472201)
               

               
               10-424, gnl|Hg17|chr1 (32309514-32309897)
               

               
               10-424, gnl|Mm7|chr4 (129089707-129089354)
               


               
               766-1119, gnl|bosTau2|chr10 (27594826-27595176)
               

               
               766-1119, gnl|Hg17|chr1 (32310911-32311257)
               

               
               766-1119, gnl|Mm7|chr4 (129088977-129088632)

Expressed library(ies): 16 entry(ies)

More info

Expressed library(ies): 16 entry(ies)

Help | Less info


               
               vin (0.332557)
               

               
               cty (0.31224)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)

Expressed library(ies): 16 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               cty (0.31224)
               

               
               mas (0.210305)
               

               
               fcc (0.197785)
               

               
               ill (0.175593)
               

               
               fhi (0.169578)
               

               
               tbr (0.154178)
               

               
               lin (0.145603)
               

               
               hlv (0.139256)
               

               
               ute (0.132784)
               

               
               cov (0.132153)
               

               
               thg (0.126791)
               

               
               eru (0.120048)
               

               
               pgl (0.118483)
               

               
               ebs (0.118301)
               

               
               cbl (0.114797)

	10-424, gnl\|bosTau2\|chr2 (73471792-73472201)
	10-424, gnl\|Hg17\|chr1 (32309514-32309897)
	10-424, gnl\|Mm7\|chr4 (129089707-129089354)

	766-1119, gnl\|bosTau2\|chr10 (27594826-27595176)
	766-1119, gnl\|Hg17\|chr1 (32310911-32311257)
	766-1119, gnl\|Mm7\|chr4 (129088977-129088632)

	vin (0.332557)
	cty (0.31224)
	mas (0.210305)
	fcc (0.197785)
	ill (0.175593)
	fhi (0.169578)
	tbr (0.154178)
	lin (0.145603)
	hlv (0.139256)
	ute (0.132784)
	cov (0.132153)
	thg (0.126791)
	eru (0.120048)
	pgl (0.118483)
	ebs (0.118301)
	cbl (0.114797)