Non-Coding RNA Search

Ss1.1-Pig4-TMW8046M15.5

Sequence:


               
               GGTTTTTAGGTGCTGCATAACATAAACCTGGTTAGGAAGCCTTTGGGATCTCAGGTTGCT
GTGGTAAAATAGCCACCATGATGTGTTAATGTGAAGGATTAGGTGCTTTTTCCAGCAGTG
GTGCTAGATTATTTACTAGACTGGCTTCCCTTAGAGTTAGGTTTTTCTTTAATTAGGTCT
TGGTAATAAACAGGTTCTTCCTCACATCTCCAGATAGCCCCCTATCATTTGCCGAAAATC
CACACGTGGAAGAAACTAACTACCTTAAGAGAACCACCTTGAGGAAGTGAGAGGAAAACA
GTTGTGTGATGTGTTTCACCTATAGCTAAATTAGGTTTCTTTATAGAAAAAGCCCCCCCT
GCCCCAAAGTATAGCATTTCAGATGGTTACATTCTGCTTTCTGCTCCGTAAACAACCAAC
CTCAGTGTAACCTCACTCCTTTGGCCACCTTCACAGACAAAGGCAAGGTGTTTTTAAGCT
CTTTGTAAAGTCTGTGCTCGTGATCAGTTGGCTGCTTCTATAGTTTCCTATGATTGAAAA
ATACTCTAGTAACAGCAAGTGTAATAAGCCGTAGAATGACTTTCTCTCTGATGCTCAACC
CATACAATTTTAGCTTTGTGTGAACTGAGAAGATAGGATGTATGCATACCTGGTCAGGTT
TTCTGTGGAGAAATATCTCTAGCCTGAATGAGGTGACTGAATGCTTCTGCCTGTTTCAGG
AAACTATATCAAAAGAAAGTTTTCATATATTTGGAGAACTTTTAAAAGAGTCTTTTGCCA
TCTCTTTCCCCAGCAACATCCTAAATTCTAAGATGACATGTAAGATGATAAAACATTCAC
TAGAGTACCTTCACTTTAGGTCTCTTATTACATTTTCTTACGACATAGGCAGTTATTAGT
CCTTTTGTTATTCACATTACCCTATATTTATGCCCCTTCAGTAGAACTAGGAATAGTATT
TTAAATCAATATAGACCTTTAGGGCAGTTATATTTATGTCCCTTCAGTAGAACTAGGAAT
AGTATTTTAAACTAGTATTGACCTTTAGGGCACTTAGGACATACTGATGATTAGATCAGA
GGCTTCTTCAAATGCTAAATTCTGGTACAGAAATATAGCCTCATATGTTTACATTGCTCC
TCTATGAGAAAACATAGTCAATTTTATGTTTTCCAGAAATTGTCGGTGATGAAAAACTTC
ATCATAATTTTCCCAGATTTGTTTTCTTCATATGTAAAATGAATTCTTGTACAATTAGAT
TCCAAAAAGGATTCTGCCTCAATGTGCCTTTAACTTTTAGCTTTAACAATTTTTCTGTTT
TATGCGTAATGTCTTAATTCTTAAGTTTTTCCTATTGAAAATAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGTTTTTAGGTGCTGCATAACATAAACCTGGTTAGGAAGCCTTTGGGATCTCAGGTTGCT
GTGGTAAAATAGCCACCATGATGTGTTAATGTGAAGGATTAGGTGCTTTTTCCAGCAGTG
GTGCTAGATTATTTACTAGACTGGCTTCCCTTAGAGTTAGGTTTTTCTTTAATTAGGTCT
TGGTAATAAACAGGTTCTTCCTCACATCTCCAGATAGCCCCCTATCATTTGCCGAAAATC
CACACGTGGAAGAAACTAACTACCTTAAGAGAACCACCTTGAGGAAGTGAGAGGAAAACA
GTTGTGTGATGTGTTTCACCTATAGCTAAATTAGGTTTCTTTATAGAAAAAGCCCCCCCT
GCCCCAAAGTATAGCATTTCAGATGGTTACATTCTGCTTTCTGCTCCGTAAACAACCAAC
CTCAGTGTAACCTCACTCCTTTGGCCACCTTCACAGACAAAGGCAAGGTGTTTTTAAGCT
CTTTGTAAAGTCTGTGCTCGTGATCAGTTGGCTGCTTCTATAGTTTCCTATGATTGAAAA
ATACTCTAGTAACAGCAAGTGTAATAAGCCGTAGAATGACTTTCTCTCTGATGCTCAACC
CATACAATTTTAGCTTTGTGTGAACTGAGAAGATAGGATGTATGCATACCTGGTCAGGTT
TTCTGTGGAGAAATATCTCTAGCCTGAATGAGGTGACTGAATGCTTCTGCCTGTTTCAGG
AAACTATATCAAAAGAAAGTTTTCATATATTTGGAGAACTTTTAAAAGAGTCTTTTGCCA
TCTCTTTCCCCAGCAACATCCTAAATTCTAAGATGACATGTAAGATGATAAAACATTCAC
TAGAGTACCTTCACTTTAGGTCTCTTATTACATTTTCTTACGACATAGGCAGTTATTAGT
CCTTTTGTTATTCACATTACCCTATATTTATGCCCCTTCAGTAGAACTAGGAATAGTATT
TTAAATCAATATAGACCTTTAGGGCAGTTATATTTATGTCCCTTCAGTAGAACTAGGAAT
AGTATTTTAAACTAGTATTGACCTTTAGGGCACTTAGGACATACTGATGATTAGATCAGA
GGCTTCTTCAAATGCTAAATTCTGGTACAGAAATATAGCCTCATATGTTTACATTGCTCC
TCTATGAGAAAACATAGTCAATTTTATGTTTTCCAGAAATTGTCGGTGATGAAAAACTTC
ATCATAATTTTCCCAGATTTGTTTTCTTCATATGTAAAATGAATTCTTGTACAATTAGAT
TCCAAAAAGGATTCTGCCTCAATGTGCCTTTAACTTTTAGCTTTAACAATTTTTCTGTTT
TATGCGTAATGTCTTAATTCTTAAGTTTTTCCTATTGAAAATAAAAAA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               159-276, - strand, RNAz p=0.931494

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               159-276, - strand, RNAz p=0.931494

Aligned organism(s): 15 entry(ies)

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Aligned organism(s): 15 entry(ies)

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               1-627, gnl|bosTau2|chr11 (52867434-52868035)
               

               
               1-627, gnl|canFam2|chr17 (24647047-24646546)
               

               
               1-627, gnl|dasNov1|scaffold_10881 (14357-13895)
               

               
               1-627, gnl|echTel1|scaffold_290655 (26488-26063)
               

               
               1-627, gnl|Hg17|chr2 (27761441-27760875)
               

               
               1-627, gnl|hg17|chrX (111431636-111432107)
               

               
               1-627, gnl|loxAfr1|scaffold_63642 (25782-26259)
               

               
               1-627, gnl|monDom2|scaffold_1 (148576799-148577358)
               

               
               1-627, gnl|oryCun1|scaffold_208178 (47193-46765)
               

               
               1-627, gnl|panTro1|chrX (115220619-115221089)
               

               
               1-627, gnl|rheMac2|chr13 (27607738-27607273)
               


               
               658-862, gnl|bosTau2|chr11 (52868465-52868667)
               

               
               658-862, gnl|Hg17|chr2 (27760818-27760629)
               


               
               989-1368, gnl|bosTau2|chr11 (52868678-52869066)
               

               
               989-1368, gnl|Hg17|chr2 (27760561-27760174)

Aligned organism(s): 15 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-627, gnl|bosTau2|chr11 (52867434-52868035)
               

               
               1-627, gnl|canFam2|chr17 (24647047-24646546)
               

               
               1-627, gnl|dasNov1|scaffold_10881 (14357-13895)
               

               
               1-627, gnl|echTel1|scaffold_290655 (26488-26063)
               

               
               1-627, gnl|Hg17|chr2 (27761441-27760875)
               

               
               1-627, gnl|hg17|chrX (111431636-111432107)
               

               
               1-627, gnl|loxAfr1|scaffold_63642 (25782-26259)
               

               
               1-627, gnl|monDom2|scaffold_1 (148576799-148577358)
               

               
               1-627, gnl|oryCun1|scaffold_208178 (47193-46765)
               

               
               1-627, gnl|panTro1|chrX (115220619-115221089)
               

               
               1-627, gnl|rheMac2|chr13 (27607738-27607273)
               


               
               658-862, gnl|bosTau2|chr11 (52868465-52868667)
               

               
               658-862, gnl|Hg17|chr2 (27760818-27760629)
               


               
               989-1368, gnl|bosTau2|chr11 (52868678-52869066)
               

               
               989-1368, gnl|Hg17|chr2 (27760561-27760174)

Expressed library(ies): 6 entry(ies)

More info

Expressed library(ies): 6 entry(ies)

Help | Less info


               
               vin (0.332557)
               

               
               tes (0.207814)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)

Expressed library(ies): 6 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               vin (0.332557)
               

               
               tes (0.207814)
               

               
               isp (0.150376)
               

               
               liv (0.146284)
               

               
               tra (0.123092)
               

               
               ecc (0.115035)

	1-627, gnl\|bosTau2\|chr11 (52867434-52868035)
	1-627, gnl\|canFam2\|chr17 (24647047-24646546)
	1-627, gnl\|dasNov1\|scaffold_10881 (14357-13895)
	1-627, gnl\|echTel1\|scaffold_290655 (26488-26063)
	1-627, gnl\|Hg17\|chr2 (27761441-27760875)
	1-627, gnl\|hg17\|chrX (111431636-111432107)
	1-627, gnl\|loxAfr1\|scaffold_63642 (25782-26259)
	1-627, gnl\|monDom2\|scaffold_1 (148576799-148577358)
	1-627, gnl\|oryCun1\|scaffold_208178 (47193-46765)
	1-627, gnl\|panTro1\|chrX (115220619-115221089)
	1-627, gnl\|rheMac2\|chr13 (27607738-27607273)

	658-862, gnl\|bosTau2\|chr11 (52868465-52868667)
	658-862, gnl\|Hg17\|chr2 (27760818-27760629)

	989-1368, gnl\|bosTau2\|chr11 (52868678-52869066)
	989-1368, gnl\|Hg17\|chr2 (27760561-27760174)

	vin (0.332557)
	tes (0.207814)
	isp (0.150376)
	liv (0.146284)
	tra (0.123092)
	ecc (0.115035)