Ss1.1-Pig4-TMW8046M21.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTACTGTCTTGAATGCGGCTCTTCTGTCCCGCCCATATTTGGCTGTCGTCTGCCACCCCC AGAAGGAGCTCAGATGGGCCTGTGTGTGGAGTGTGAAAACCTGGTGCCCATGAATGCCCC CATCTGTGTGGTGTGCGAGGCCCCTCTTGCTCCACAACTGCAGCCACAGGCCAGCCTCCG CCTGAAGGACAAAGTGATCTGCCGCACCTGCGGCACCGGGAATCCTGCTCACCTGAGATA CTGCGTCACCTGTGACGGGCCCCTGCCTTCGTCACAAGAGCCTCGATCTGCCTGGCAGTC CCTCAGTGTTACTTTGCCCAGAGCTGATGCTGGGACCAAGAAGGACACAGGCACACAGAC CACTGGCCTCTTCTACCCATCTGGGACGCTGCTGGCGAAAAAAGAACTGGAAGTGGCCTC TCAGAAGCAGAGGCAGGAGAAAATGAGCGACCATAAGCCTCTCCTCACAGCCGTCAGCCC AGGAAGAGGATACTGGAGAAAACAGGTGGACCACATCGCCGCTCACCTCCGGTCTTATGC TCAGAACAACCCTGAATTCCGGGCCTTGATTGCAGAGCCCAGGATGGGAAAGCTTATCTC TGCTACTGTCCATGAGGATGGCTATGAAGTCAGCATCAGGCTGAATTACATTCAAGTCTC AAACAAGAACCTTTACCTAAACAAGGCGGTGAACTTCAGTGACCACTTTCTGAGCAGTGT CACCGAGGGTGCAAACGGCCTGTATGGCAGCAGGTCCAGCTTGGTGAGTGACTACAGCCA GAGCTCCTCGGACGGCGCCGAAAAAGTCACAAGGTCCAAGAATTTCAAGACCAAAGCGTT TCAAGAAAAGCAGCAGCTTACACCTGAAAACATGCTCCTGCTGAAGGAAGTTGGACCAGC GGGGGAAGGAAGAGCCTCTGTGATGGAACAGCTGCTTGATGAGGGAGCAGACCCCAACTG CAGTGACAGTGAGGACCGCCCCGTCCTTAGCACAGCTGTCATGAACAAGCACCATGAAGC GATTCCGGTTCTTGTGCAGAGAGGAGCAGACGTGGACCAGCAGTGGGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTACTGTCTTGAATGCGGCTCTTCTGTCCCGCCCATATTTGGCTGTCGTCTGCCACCCCC AGAAGGAGCTCAGATGGGCCTGTGTGTGGAGTGTGAAAACCTGGTGCCCATGAATGCCCC CATCTGTGTGGTGTGCGAGGCCCCTCTTGCTCCACAACTGCAGCCACAGGCCAGCCTCCG CCTGAAGGACAAAGTGATCTGCCGCACCTGCGGCACCGGGAATCCTGCTCACCTGAGATA CTGCGTCACCTGTGACGGGCCCCTGCCTTCGTCACAAGAGCCTCGATCTGCCTGGCAGTC CCTCAGTGTTACTTTGCCCAGAGCTGATGCTGGGACCAAGAAGGACACAGGCACACAGAC CACTGGCCTCTTCTACCCATCTGGGACGCTGCTGGCGAAAAAAGAACTGGAAGTGGCCTC TCAGAAGCAGAGGCAGGAGAAAATGAGCGACCATAAGCCTCTCCTCACAGCCGTCAGCCC AGGAAGAGGATACTGGAGAAAACAGGTGGACCACATCGCCGCTCACCTCCGGTCTTATGC TCAGAACAACCCTGAATTCCGGGCCTTGATTGCAGAGCCCAGGATGGGAAAGCTTATCTC TGCTACTGTCCATGAGGATGGCTATGAAGTCAGCATCAGGCTGAATTACATTCAAGTCTC AAACAAGAACCTTTACCTAAACAAGGCGGTGAACTTCAGTGACCACTTTCTGAGCAGTGT CACCGAGGGTGCAAACGGCCTGTATGGCAGCAGGTCCAGCTTGGTGAGTGACTACAGCCA GAGCTCCTCGGACGGCGCCGAAAAAGTCACAAGGTCCAAGAATTTCAAGACCAAAGCGTT TCAAGAAAAGCAGCAGCTTACACCTGAAAACATGCTCCTGCTGAAGGAAGTTGGACCAGC GGGGGAAGGAAGAGCCTCTGTGATGGAACAGCTGCTTGATGAGGGAGCAGACCCCAACTG CAGTGACAGTGAGGACCGCCCCGTCCTTAGCACAGCTGTCATGAACAAGCACCATGAAGC GATTCCGGTTCTTGTGCAGAGAGGAGCAGACGTGGACCAGCAGTGGGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 951-1068, - strand, RNAz p=0.858723 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 951-1068, - strand, RNAz p=0.858723 |
| Aligned organism(s): 48 entry(ies) | More info |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
| 71-188, gnl|bosTau2|chr13 (24211012-24210895) | |
| 71-188, gnl|canFam2|chr24 (7765331-7765176) | |
| 71-188, gnl|danRer3|chr22 (26746673-26746531) | |
| 71-188, gnl|echTel1|scaffold_159501 (2330-2492) | |
| 71-188, gnl|hg17|chr20 (18362281-18362440) | |
| 71-188, gnl|Hg17|chr20 (18362412-18362295) | |
| 71-188, gnl|loxAfr1|scaffold_83914 (6556-6715) | |
| 71-188, gnl|mm7|chr2 (144243760-144243920) | |
| 71-188, gnl|Mm7|chr2 (144243891-144243774) | |
| 71-188, gnl|oryCun1|scaffold_121690 (2559-2718) | |
| 71-188, gnl|panTro1|chr21 (18242365-18242524) | |
| 71-188, gnl|rheMac2|chr10 (51759387-51759546) | |
| 71-188, gnl|rn3|chr3 (132957462-132957616) | |
| 262-489, gnl|bosTau2|chr13 (24204531-24204305) | |
| 262-489, gnl|canFam2|chr24 (7777304-7777139) | |
| 262-489, gnl|danRer3|chrUn (179137983-179138130) | |
| 262-489, gnl|dasNov1|scaffold_192351 (3482-3314) | |
| 262-489, gnl|echTel1|scaffold_164958 (4860-4692) | |
| 262-489, gnl|fr1|chrUn (264897774-264897916) | |
| 262-489, gnl|galGal2|chr14 (16837636-16837803) | |
| 262-489, gnl|hg17|chr20 (18341267-18341435) | |
| 262-489, gnl|Hg17|chr20 (18341513-18341289) | |
| 262-489, gnl|loxAfr1|scaffold_10543 (58704-58872) | |
| 262-489, gnl|mm7|chr2 (144229460-144229623) | |
| 262-489, gnl|Mm7|chr2 (144229701-144229477) | |
| 262-489, gnl|monDom2|scaffold_1 (53082874-53083042) | |
| 262-489, gnl|oryCun1|scaffold_187143 (96297-96128) | |
| 262-489, gnl|panTro1|chr21 (18221236-18221404) | |
| 262-489, gnl|rheMac2|chr10 (51730043-51730210) | |
| 262-489, gnl|rn3|chr3 (132941983-132942147) | |
| 262-489, gnl|xenTro1|scaffold_658 (495148-494999) | |
| 666-769, gnl|bosTau2|chr13 (24198145-24198040) | |
| 666-769, gnl|canFam2|chr24 (7783032-7782869) | |
| 666-769, gnl|dasNov1|scaffold_233372 (267-104) | |
| 666-769, gnl|echTel1|scaffold_236987 (3395-3569) | |
| 666-769, gnl|hg17|chr20 (18322868-18323032) | |
| 666-769, gnl|Hg17|chr20 (18322996-18322892) | |
| 666-769, gnl|loxAfr1|scaffold_10543 (50316-50483) | |
| 666-769, gnl|mm7|chr2 (144222959-144223123) | |
| 666-769, gnl|Mm7|chr2 (144223086-144222982) | |
| 666-769, gnl|monDom2|scaffold_1 (53047372-53047531) | |
| 666-769, gnl|oryCun1|scaffold_187143 (103809-103648) | |
| 666-769, gnl|panTro1|chr21 (18202838-18203002) | |
| 666-769, gnl|rheMac2|chr10 (51711695-51711859) | |
| 666-769, gnl|rn3|chr3 (132935808-132935968) | |
| 942-1068, gnl|bosTau2|chr13 (24189666-24189540) | |
| 942-1068, gnl|Hg17|chr20 (18318474-18318348) | |
| 942-1068, gnl|Mm7|chr2 (144220001-144219875) |
| Aligned organism(s): 48 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 71-188, gnl|bosTau2|chr13 (24211012-24210895) | |
| 71-188, gnl|canFam2|chr24 (7765331-7765176) | |
| 71-188, gnl|danRer3|chr22 (26746673-26746531) | |
| 71-188, gnl|echTel1|scaffold_159501 (2330-2492) | |
| 71-188, gnl|hg17|chr20 (18362281-18362440) | |
| 71-188, gnl|Hg17|chr20 (18362412-18362295) | |
| 71-188, gnl|loxAfr1|scaffold_83914 (6556-6715) | |
| 71-188, gnl|mm7|chr2 (144243760-144243920) | |
| 71-188, gnl|Mm7|chr2 (144243891-144243774) | |
| 71-188, gnl|oryCun1|scaffold_121690 (2559-2718) | |
| 71-188, gnl|panTro1|chr21 (18242365-18242524) | |
| 71-188, gnl|rheMac2|chr10 (51759387-51759546) | |
| 71-188, gnl|rn3|chr3 (132957462-132957616) | |
| 262-489, gnl|bosTau2|chr13 (24204531-24204305) | |
| 262-489, gnl|canFam2|chr24 (7777304-7777139) | |
| 262-489, gnl|danRer3|chrUn (179137983-179138130) | |
| 262-489, gnl|dasNov1|scaffold_192351 (3482-3314) | |
| 262-489, gnl|echTel1|scaffold_164958 (4860-4692) | |
| 262-489, gnl|fr1|chrUn (264897774-264897916) | |
| 262-489, gnl|galGal2|chr14 (16837636-16837803) | |
| 262-489, gnl|hg17|chr20 (18341267-18341435) | |
| 262-489, gnl|Hg17|chr20 (18341513-18341289) | |
| 262-489, gnl|loxAfr1|scaffold_10543 (58704-58872) | |
| 262-489, gnl|mm7|chr2 (144229460-144229623) | |
| 262-489, gnl|Mm7|chr2 (144229701-144229477) | |
| 262-489, gnl|monDom2|scaffold_1 (53082874-53083042) | |
| 262-489, gnl|oryCun1|scaffold_187143 (96297-96128) | |
| 262-489, gnl|panTro1|chr21 (18221236-18221404) | |
| 262-489, gnl|rheMac2|chr10 (51730043-51730210) | |
| 262-489, gnl|rn3|chr3 (132941983-132942147) | |
| 262-489, gnl|xenTro1|scaffold_658 (495148-494999) | |
| 666-769, gnl|bosTau2|chr13 (24198145-24198040) | |
| 666-769, gnl|canFam2|chr24 (7783032-7782869) | |
| 666-769, gnl|dasNov1|scaffold_233372 (267-104) | |
| 666-769, gnl|echTel1|scaffold_236987 (3395-3569) | |
| 666-769, gnl|hg17|chr20 (18322868-18323032) | |
| 666-769, gnl|Hg17|chr20 (18322996-18322892) | |
| 666-769, gnl|loxAfr1|scaffold_10543 (50316-50483) | |
| 666-769, gnl|mm7|chr2 (144222959-144223123) | |
| 666-769, gnl|Mm7|chr2 (144223086-144222982) | |
| 666-769, gnl|monDom2|scaffold_1 (53047372-53047531) | |
| 666-769, gnl|oryCun1|scaffold_187143 (103809-103648) | |
| 666-769, gnl|panTro1|chr21 (18202838-18203002) | |
| 666-769, gnl|rheMac2|chr10 (51711695-51711859) | |
| 666-769, gnl|rn3|chr3 (132935808-132935968) | |
| 942-1068, gnl|bosTau2|chr13 (24189666-24189540) | |
| 942-1068, gnl|Hg17|chr20 (18318474-18318348) | |
| 942-1068, gnl|Mm7|chr2 (144220001-144219875) |
| Expressed library(ies): 6 entry(ies) | More info |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
| ebs (0.236602) | |
| ece (0.229305) | |
| hyp (0.142837) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| cty (0.10408) |
| Expressed library(ies): 6 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| ebs (0.236602) | |
| ece (0.229305) | |
| hyp (0.142837) | |
| cly (0.120642) | |
| pgl (0.118483) | |
| cty (0.10408) |