Ss1.1-Pig4-TMW8046M22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CCGAATACAGAATCCAGGTGCTTCCCTACAAGTCCATCCTGAGCGAGCTCAAGGTCCTGT GTGCCAGCCTGTCGCCTAGGGAGAAGGTGTGGGTCAGTGACAAGGCCAGCTATGCCGTGA GCGAGGCCATCCCCAAGGATCATCGCTGCTGTATGCCTTACACCCCCATCTGCATCGCCA AAGCTGTGAAGAATTCTGCCGAATCAGAAGGCATGAGGCGAGCTCATATTAAAGATGCCG TTGCCCTCTGTGAACTCTTTAACTGGCTGGAGAAAGAGGTGCCCAAAGGCGGCGTGACGG AGATCTCAGCTGCTGACAAAGCTGAGGAATTCCGCAGGCAGCAGGCTGACTTTGTGGACC TGAGCTTCCCAACAATTTCCAGTACGGGACCCAACGGCGCCATCATTCACTACGCGCCAG TCCCTGAGACGAATAGGACCTTGTCGCTGGATGAGGTGTACCTCATTGACTCGGGTGCAC AGTACAAGGATGGAACAACAGATGTGACTCGTACCATGCATTTTGGAACCCCTACGGCAT ATGAGAAGGAATGCTTCACATATGTCCTCAAGGGCCACATAGCTGTGAGCGCTGCCGTTT TCCCGACCGGGACCAAAGGCCACCTTCTGGACTCCTTTGCCCGCTCTGCTTTGTGGGATT CTGGCCTGGATTACCTGCACGGAACAGGACACGGGGTCGGGTCTTTTCTGAATGTTCACG AGGGTCCTTGTGGCATCAGTTATAAAACATTCTCCGATGAGCCCTTGGAGGCGGGCATGA TTGTCACCGATGAGCCAGGGTATTACGAAGATGGGGCTTTTGGAATTCGCATTGAGAATG TTGTCCTGGTGGTTCCTGTGAAGACCAAGTATAACTTTAATAACCGGGGAAGCCTGACCT TTGAACCTCTAACTTTGGTTCCCATACAGACCAAAATGATAGACGTGGATTCCCTTACAG ACAAAGAGTGTGACTGGCTCAACAACTACCATCTGACCTGTAGGGATGTAATCGGGAAGG AACTGCAAAAACAGGGCCGCCAGGAAGCGCTCGAGTGGCTCATCAGAGAGACACAGCCCA TCTCCAAACAGCATTAATATCTCCCTGATTTTTTTTAAAAAACGCTCTGGGGAAAGGAAG AAGCCTGGCACACCCCCAACATCTTCCCCCTTTTGTCTCCTTCCTTACCTCCCCTTTTTA CTTTTAGACTCTAAGAAGAACTGAAAATCTTCTTATCCTCTTTGATATTTTCTTGCAAAC ACTTGATCTTTTATGATTTTTTTTTAAATTGTTGAGAACTAGCAAAGAATAAATTGCTGC CCCAGAGGAGGATTCCCCACAAAGCCCAGTGCTCGGATCAGGGGCGATGCCCTGAGCAGC CGCGGGGGATCCAGTGTTTGGCGATGGCGAAGCAGTGAGCGGTCTGCGACCGCCACGTTC CGGTGCTAGTACATCATTCATGGCCACCTTCCTGTGCACGAGACTGTATTTATCATCAGT GAATAAAATGTCAGAATGGGAAAAAAAAAAAAAAAA |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CCGAATACAGAATCCAGGTGCTTCCCTACAAGTCCATCCTGAGCGAGCTCAAGGTCCTGT GTGCCAGCCTGTCGCCTAGGGAGAAGGTGTGGGTCAGTGACAAGGCCAGCTATGCCGTGA GCGAGGCCATCCCCAAGGATCATCGCTGCTGTATGCCTTACACCCCCATCTGCATCGCCA AAGCTGTGAAGAATTCTGCCGAATCAGAAGGCATGAGGCGAGCTCATATTAAAGATGCCG TTGCCCTCTGTGAACTCTTTAACTGGCTGGAGAAAGAGGTGCCCAAAGGCGGCGTGACGG AGATCTCAGCTGCTGACAAAGCTGAGGAATTCCGCAGGCAGCAGGCTGACTTTGTGGACC TGAGCTTCCCAACAATTTCCAGTACGGGACCCAACGGCGCCATCATTCACTACGCGCCAG TCCCTGAGACGAATAGGACCTTGTCGCTGGATGAGGTGTACCTCATTGACTCGGGTGCAC AGTACAAGGATGGAACAACAGATGTGACTCGTACCATGCATTTTGGAACCCCTACGGCAT ATGAGAAGGAATGCTTCACATATGTCCTCAAGGGCCACATAGCTGTGAGCGCTGCCGTTT TCCCGACCGGGACCAAAGGCCACCTTCTGGACTCCTTTGCCCGCTCTGCTTTGTGGGATT CTGGCCTGGATTACCTGCACGGAACAGGACACGGGGTCGGGTCTTTTCTGAATGTTCACG AGGGTCCTTGTGGCATCAGTTATAAAACATTCTCCGATGAGCCCTTGGAGGCGGGCATGA TTGTCACCGATGAGCCAGGGTATTACGAAGATGGGGCTTTTGGAATTCGCATTGAGAATG TTGTCCTGGTGGTTCCTGTGAAGACCAAGTATAACTTTAATAACCGGGGAAGCCTGACCT TTGAACCTCTAACTTTGGTTCCCATACAGACCAAAATGATAGACGTGGATTCCCTTACAG ACAAAGAGTGTGACTGGCTCAACAACTACCATCTGACCTGTAGGGATGTAATCGGGAAGG AACTGCAAAAACAGGGCCGCCAGGAAGCGCTCGAGTGGCTCATCAGAGAGACACAGCCCA TCTCCAAACAGCATTAATATCTCCCTGATTTTTTTTAAAAAACGCTCTGGGGAAAGGAAG AAGCCTGGCACACCCCCAACATCTTCCCCCTTTTGTCTCCTTCCTTACCTCCCCTTTTTA CTTTTAGACTCTAAGAAGAACTGAAAATCTTCTTATCCTCTTTGATATTTTCTTGCAAAC ACTTGATCTTTTATGATTTTTTTTTAAATTGTTGAGAACTAGCAAAGAATAAATTGCTGC CCCAGAGGAGGATTCCCCACAAAGCCCAGTGCTCGGATCAGGGGCGATGCCCTGAGCAGC CGCGGGGGATCCAGTGTTTGGCGATGGCGAAGCAGTGAGCGGTCTGCGACCGCCACGTTC CGGTGCTAGTACATCATTCATGGCCACCTTCCTGTGCACGAGACTGTATTTATCATCAGT GAATAAAATGTCAGAATGGGAAAAAAAAAAAAAAAA |
| Coded protein: 1 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | More info |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
| 1-138, gnl|bosTau2|chr26 (19902904-19903041) | |
| 1-138, gnl|canFam2|chr28 (24284930-24285167) | |
| 1-138, gnl|danRer3|chr22 (38645261-38645502) | |
| 1-138, gnl|dasNov1|scaffold_686 (156236-155999) | |
| 1-138, gnl|echTel1|scaffold_218398 (17388-17156) | |
| 1-138, gnl|fr1|chrUn (79683207-79682969) | |
| 1-138, gnl|galGal2|chr6 (24754789-24755010) | |
| 1-138, gnl|hg17|chr10 (111632173-111632410) | |
| 1-138, gnl|Hg17|chr10 (111632316-111632179) | |
| 1-138, gnl|mm7|chr19 (52906788-52907024) | |
| 1-138, gnl|Mm7|chr19 (52906931-52906794) | |
| 1-138, gnl|monDom2|scaffold_14 (53592206-53591976) | |
| 1-138, gnl|oryCun1|scaffold_214048 (36182-36422) | |
| 1-138, gnl|panTro1|chr8 (113538226-113538463) | |
| 1-138, gnl|rheMac2|chr9 (109553254-109553491) | |
| 1-138, gnl|rn3|chr1 (259370305-259370529) | |
| 1-138, gnl|tetNig1|chr18 (2307135-2307358) | |
| 617-792, gnl|bosTau2|chr26 (19914160-19914335) | |
| 617-792, gnl|Hg17|chr10 (111620654-111620479) | |
| 617-792, gnl|Mm7|chr19 (52897715-52897540) | |
| 868-968, gnl|bosTau2|chr26 (19916538-19916638) | |
| 868-968, gnl|canFam2|chr28 (24272623-24272765) | |
| 868-968, gnl|danRer3|chr22 (38640758-38640892) | |
| 868-968, gnl|dasNov1|scaffold_686 (169138-168995) | |
| 868-968, gnl|echTel1|scaffold_61088 (456-318) | |
| 868-968, gnl|fr1|chrUn (79685237-79685105) | |
| 868-968, gnl|galGal2|chr6 (24742802-24742944) | |
| 868-968, gnl|hg17|chr10 (111618351-111618493) | |
| 868-968, gnl|Hg17|chr10 (111618462-111618362) | |
| 868-968, gnl|loxAfr1|scaffold_13991 (15236-15100) | |
| 868-968, gnl|mm7|chr19 (52896051-52896192) | |
| 868-968, gnl|Mm7|chr19 (52896161-52896061) | |
| 868-968, gnl|monDom2|scaffold_14 (53618259-53618102) | |
| 868-968, gnl|oryCun1|scaffold_139659 (9654-9513) | |
| 868-968, gnl|panTro1|chr8 (113524363-113524505) | |
| 868-968, gnl|rheMac2|chr9 (109538165-109538307) | |
| 868-968, gnl|rn3|chr1 (259359865-259360003) | |
| 868-968, gnl|tetNig1|chr18 (2305210-2305325) | |
| 1118-1520, gnl|bosTau2|chr26 (19920616-19921013) | |
| 1118-1520, gnl|Hg17|chr10 (111614852-111614514) |
| Aligned organism(s): 40 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-138, gnl|bosTau2|chr26 (19902904-19903041) | |
| 1-138, gnl|canFam2|chr28 (24284930-24285167) | |
| 1-138, gnl|danRer3|chr22 (38645261-38645502) | |
| 1-138, gnl|dasNov1|scaffold_686 (156236-155999) | |
| 1-138, gnl|echTel1|scaffold_218398 (17388-17156) | |
| 1-138, gnl|fr1|chrUn (79683207-79682969) | |
| 1-138, gnl|galGal2|chr6 (24754789-24755010) | |
| 1-138, gnl|hg17|chr10 (111632173-111632410) | |
| 1-138, gnl|Hg17|chr10 (111632316-111632179) | |
| 1-138, gnl|mm7|chr19 (52906788-52907024) | |
| 1-138, gnl|Mm7|chr19 (52906931-52906794) | |
| 1-138, gnl|monDom2|scaffold_14 (53592206-53591976) | |
| 1-138, gnl|oryCun1|scaffold_214048 (36182-36422) | |
| 1-138, gnl|panTro1|chr8 (113538226-113538463) | |
| 1-138, gnl|rheMac2|chr9 (109553254-109553491) | |
| 1-138, gnl|rn3|chr1 (259370305-259370529) | |
| 1-138, gnl|tetNig1|chr18 (2307135-2307358) | |
| 617-792, gnl|bosTau2|chr26 (19914160-19914335) | |
| 617-792, gnl|Hg17|chr10 (111620654-111620479) | |
| 617-792, gnl|Mm7|chr19 (52897715-52897540) | |
| 868-968, gnl|bosTau2|chr26 (19916538-19916638) | |
| 868-968, gnl|canFam2|chr28 (24272623-24272765) | |
| 868-968, gnl|danRer3|chr22 (38640758-38640892) | |
| 868-968, gnl|dasNov1|scaffold_686 (169138-168995) | |
| 868-968, gnl|echTel1|scaffold_61088 (456-318) | |
| 868-968, gnl|fr1|chrUn (79685237-79685105) | |
| 868-968, gnl|galGal2|chr6 (24742802-24742944) | |
| 868-968, gnl|hg17|chr10 (111618351-111618493) | |
| 868-968, gnl|Hg17|chr10 (111618462-111618362) | |
| 868-968, gnl|loxAfr1|scaffold_13991 (15236-15100) | |
| 868-968, gnl|mm7|chr19 (52896051-52896192) | |
| 868-968, gnl|Mm7|chr19 (52896161-52896061) | |
| 868-968, gnl|monDom2|scaffold_14 (53618259-53618102) | |
| 868-968, gnl|oryCun1|scaffold_139659 (9654-9513) | |
| 868-968, gnl|panTro1|chr8 (113524363-113524505) | |
| 868-968, gnl|rheMac2|chr9 (109538165-109538307) | |
| 868-968, gnl|rn3|chr1 (259359865-259360003) | |
| 868-968, gnl|tetNig1|chr18 (2305210-2305325) | |
| 1118-1520, gnl|bosTau2|chr26 (19920616-19921013) | |
| 1118-1520, gnl|Hg17|chr10 (111614852-111614514) |
| Expressed library(ies): 17 entry(ies) | More info |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
| elu (0.770713) | |
| amn (0.417711) | |
| cov (0.396458) | |
| nje (0.33184) | |
| fce (0.271592) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| ova (0.129132) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) |
| Expressed library(ies): 17 entry(ies) | Help | Less info |
Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description
| elu (0.770713) | |
| amn (0.417711) | |
| cov (0.396458) | |
| nje (0.33184) | |
| fce (0.271592) | |
| ill (0.175593) | |
| fbs (0.175346) | |
| fhi (0.169578) | |
| cli (0.152812) | |
| eli (0.151814) | |
| hyp (0.142837) | |
| hlv (0.139256) | |
| pla (0.133672) | |
| ova (0.129132) | |
| med (0.116252) | |
| jca (0.11396) | |
| cty (0.10408) |