Non-Coding RNA Search

Ss1.1-Pig4-TMW8046N06.3

Sequence:


               
               AAGTGACATACCTCAAGAAATTCATGCAGATAGGATCAAACTTAGGGAAAGAAAATCACT
TGTAGTGAGTGAGGTTAGTGCTAATGATGTTGATTGTTTGGAGAGGGCTATGCTAGTGCC
ATTCACTGTTCAAGTTCCACAATCCTTTTTGTAGAGAGAGAAGAGAAAATTACTGAGATA
GATTTAGATGAGGACCTAACAATCACATGAATATAACTCCAGTTCTTAAATTATTTCCAT
AGGCATGTTTCTAGTTTGAGATTGTTTAAAATTAAAATGTGTTCCTTAATTTGCCTCAAG
GCATGTTATTTAAAATACTTAGATTCAAAAATCAGTCTAATTCTTTTTCTTTTGATTTTC
ATGAAAAAGAATGGCTGTTCACTAGAAATCTGTTTTTAAACAGGAGCATGAATCTGAAGG
TGGAAGAACTCCTTTAATGAAAGCTGCAAGAGCTGGTCATGTTTGTACCGTTCAGTTCTT
AATTAGTAAAGGAGCAAATGTGAATAGAACCACAGCTAATAATGACCATACTGTGCTGTC
CCTGGCTTGTGCAGGGGGTCATCTGGCAGTGGTGGAACTGCTTTTGGCTCATGGGGCAGA
TCCTACTCACCGTTTAAAAGATGGCTCAACTATGTTGATAGAAGCAGCAAAAGGTGGCCA
TACAAGTGTCGTTTGCTATCTTTTGGACTATCCTAATAACTTGCTTTCAGCCCCTCCACC
AGATGTCACTCAGTTAACCCCTCCATCCCACGATTTAAATAGGGCTCCTCGTGTACCAGT
TCAAGCACTGCCCATGGTTGTCCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AAGTGACATACCTCAAGAAATTCATGCAGATAGGATCAAACTTAGGGAAAGAAAATCACT
TGTAGTGAGTGAGGTTAGTGCTAATGATGTTGATTGTTTGGAGAGGGCTATGCTAGTGCC
ATTCACTGTTCAAGTTCCACAATCCTTTTTGTAGAGAGAGAAGAGAAAATTACTGAGATA
GATTTAGATGAGGACCTAACAATCACATGAATATAACTCCAGTTCTTAAATTATTTCCAT
AGGCATGTTTCTAGTTTGAGATTGTTTAAAATTAAAATGTGTTCCTTAATTTGCCTCAAG
GCATGTTATTTAAAATACTTAGATTCAAAAATCAGTCTAATTCTTTTTCTTTTGATTTTC
ATGAAAAAGAATGGCTGTTCACTAGAAATCTGTTTTTAAACAGGAGCATGAATCTGAAGG
TGGAAGAACTCCTTTAATGAAAGCTGCAAGAGCTGGTCATGTTTGTACCGTTCAGTTCTT
AATTAGTAAAGGAGCAAATGTGAATAGAACCACAGCTAATAATGACCATACTGTGCTGTC
CCTGGCTTGTGCAGGGGGTCATCTGGCAGTGGTGGAACTGCTTTTGGCTCATGGGGCAGA
TCCTACTCACCGTTTAAAAGATGGCTCAACTATGTTGATAGAAGCAGCAAAAGGTGGCCA
TACAAGTGTCGTTTGCTATCTTTTGGACTATCCTAATAACTTGCTTTCAGCCCCTCCACC
AGATGTCACTCAGTTAACCCCTCCATCCCACGATTTAAATAGGGCTCCTCGTGTACCAGT
TCAAGCACTGCCCATGGTTGTCCC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               270-388, - strand, RNAz p=0.912341

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               270-388, - strand, RNAz p=0.912341

Aligned organism(s): 2 entry(ies)

More info

Aligned organism(s): 2 entry(ies)

Help | Less info


               
               2-492, gnl|bosTau2|chr18 (27128275-27127777)
               

               
               2-492, gnl|Hg17|chr4 (74376055-74375496)

Aligned organism(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-492, gnl|bosTau2|chr18 (27128275-27127777)
               

               
               2-492, gnl|Hg17|chr4 (74376055-74375496)

Expressed library(ies): 1 entry(ies)

More info

Expressed library(ies): 1 entry(ies)

Help | Less info


               
               cty (0.10408)

Expressed library(ies): 1 entry(ies)

Help | Less info

Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cty (0.10408)

	2-492, gnl\|bosTau2\|chr18 (27128275-27127777)
	2-492, gnl\|Hg17\|chr4 (74376055-74375496)