Non-Coding RNA Search

Ss1.1-Pig4-TMW8046N08.3

Sequence:


               
               ATGGTGCAGAGAGACTGCAGCTGACATCTAGGATGCAAAAGGAAGGAGAGGAAGAAAAGA
AGGAAAGAATAAGAATGAGAAGAAGAAAAGATAACCAGCAACGTAAGAGTCAGAGAAGGG
AGCCGATGTCAGCAAAAGGGTTAGGGACAGGAGCAGACTTTCTTATGAATGAGAAAGGAT
GCCTGGAAATGAAATCCTTGCTGTGGAAGATATGAATAGTTTCAATGCTTCTACTTGTCA
AGAGAATTTTGAGGGCACCTGGAAGAGGGGTGTCTACCTCCAGTTTCTTCCCTTAAGACC
CTCTTTTTTTGCCTCTTTTCCAAGAGAAGGGATGTGATGAACCAGATGCCCAGGCACTCA
TTGGGTCATCGTTACCAGGGGGCAGAATCACCAGGACAAACAAGTCTGAAGAAGGATATA
CTCTCTGCATGATTCAAGAGACACAACTGCTGGCGACATTTAGAGTCACAAGGAGGACTC
ACAACCAGAGAAAAGGAAGGGCTTCTCCTCCAACCAGCGCTGGTTTGAAAGTCCCAGCAA
AGAGTCAACCAGCCTTTAATGGTGCCCTTTCCCTTTGCCTCGGAAGGTGTACGGCAGTGA
CCCAGTCGTAAGTATAAATATATCCATTCCTTTCTCCCATACATGTTATCACAAACCATT
GAGTAGATCTGCCTGTGCTCTACGGCAGGTTCTCGTTAATAACCTGTTTTACACAGTAGG
GTGTATATGTTATTCTTCCTGTTTCCCTTTTCCGCTAGTCTCCAAAGTGGCCAAATCAAT
GACAGCATGAAGGAGCTGTTTTATCCCATCTGCCTTGGCATTACATGT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATGGTGCAGAGAGACTGCAGCTGACATCTAGGATGCAAAAGGAAGGAGAGGAAGAAAAGA
AGGAAAGAATAAGAATGAGAAGAAGAAAAGATAACCAGCAACGTAAGAGTCAGAGAAGGG
AGCCGATGTCAGCAAAAGGGTTAGGGACAGGAGCAGACTTTCTTATGAATGAGAAAGGAT
GCCTGGAAATGAAATCCTTGCTGTGGAAGATATGAATAGTTTCAATGCTTCTACTTGTCA
AGAGAATTTTGAGGGCACCTGGAAGAGGGGTGTCTACCTCCAGTTTCTTCCCTTAAGACC
CTCTTTTTTTGCCTCTTTTCCAAGAGAAGGGATGTGATGAACCAGATGCCCAGGCACTCA
TTGGGTCATCGTTACCAGGGGGCAGAATCACCAGGACAAACAAGTCTGAAGAAGGATATA
CTCTCTGCATGATTCAAGAGACACAACTGCTGGCGACATTTAGAGTCACAAGGAGGACTC
ACAACCAGAGAAAAGGAAGGGCTTCTCCTCCAACCAGCGCTGGTTTGAAAGTCCCAGCAA
AGAGTCAACCAGCCTTTAATGGTGCCCTTTCCCTTTGCCTCGGAAGGTGTACGGCAGTGA
CCCAGTCGTAAGTATAAATATATCCATTCCTTTCTCCCATACATGTTATCACAAACCATT
GAGTAGATCTGCCTGTGCTCTACGGCAGGTTCTCGTTAATAACCTGTTTTACACAGTAGG
GTGTATATGTTATTCTTCCTGTTTCCCTTTTCCGCTAGTCTCCAAAGTGGCCAAATCAAT
GACAGCATGAAGGAGCTGTTTTATCCCATCTGCCTTGGCATTACATGT

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               172-426, gnl|bosTau2|chr5 (42128716-42128451)
               

               
               172-426, gnl|Hg17|chr12 (105172125-105171868)
               

               
               172-426, gnl|Mm7|chr10 (84090996-84090744)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               172-426, gnl|bosTau2|chr5 (42128716-42128451)
               

               
               172-426, gnl|Hg17|chr12 (105172125-105171868)
               

               
               172-426, gnl|Mm7|chr10 (84090996-84090744)

Expressed library(ies): 1 entry(ies)

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Expressed library(ies): 1 entry(ies)

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               cst (0.280073)

Expressed library(ies): 1 entry(ies)

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Short name of the library (expression score),
see https://rth.dk/resources/pigest/download/pigest_kvl_1.0.1/cDNA_names.html for library description


               
               cst (0.280073)

	172-426, gnl\|bosTau2\|chr5 (42128716-42128451)
	172-426, gnl\|Hg17\|chr12 (105172125-105171868)
	172-426, gnl\|Mm7\|chr10 (84090996-84090744)